data_VR3 # _chem_comp.id VR3 _chem_comp.name "[(3~{S},8~{S},9~{S},10~{R},13~{S},14~{S})-10,13-dimethyl-2,3,4,7,8,9,11,12,14,15,16,17-dodecahydro-1~{H}-cyclopenta[a]phenanthren-3-yl] sulfamate" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C19 H31 N O3 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-03-29 _chem_comp.pdbx_modified_date 2024-04-05 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 353.519 _chem_comp.one_letter_code ? _chem_comp.three_letter_code VR3 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8OKO _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal VR3 C1 C1 C 0 1 N N N N N N -3.190 4.345 13.803 1.953 1.838 0.169 C1 VR3 1 VR3 C2 C2 C 0 1 N N S N N N -4.094 4.398 15.001 2.658 0.483 0.079 C2 VR3 2 VR3 C3 C3 C 0 1 N N N N N N -5.168 5.474 14.732 1.884 -0.432 -0.875 C3 VR3 3 VR3 C4 C4 C 0 1 N N N N N N -4.544 6.740 14.447 0.445 -0.517 -0.396 C4 VR3 4 VR3 C5 C5 C 0 1 N N R N N N -3.402 6.806 13.533 -0.284 0.768 -0.134 C5 VR3 5 VR3 C6 C6 C 0 1 N N N N N N -5.055 7.901 15.017 -0.084 -1.695 -0.241 C6 VR3 6 VR3 C7 C7 C 0 1 N N S N N N -2.570 8.125 13.797 -1.664 0.565 0.469 C7 VR3 7 VR3 C8 C8 C 0 1 N N N N N N -4.483 9.222 14.881 -1.493 -1.903 0.234 C8 VR3 8 VR3 C9 C9 C 0 1 N N S N N N -3.526 9.324 13.732 -2.341 -0.669 -0.144 C9 VR3 9 VR3 C10 C10 C 0 1 N N N N N N -2.460 5.636 13.788 0.563 1.656 0.782 C10 VR3 10 VR3 C11 C11 C 0 1 N N N N N N -1.360 8.227 12.856 -2.506 1.821 0.264 C11 VR3 11 VR3 C12 C12 C 0 1 N N S N N N -2.652 10.617 13.889 -3.718 -0.795 0.483 C12 VR3 12 VR3 C13 C13 C 0 1 N N S N N N -1.620 10.767 12.817 -4.532 0.459 0.064 C13 VR3 13 VR3 C14 C14 C 0 1 N N N N N N -0.639 9.569 12.921 -3.939 1.638 0.787 C14 VR3 14 VR3 C15 C15 C 0 1 N N N N N N -2.183 10.890 11.396 -4.422 0.669 -1.448 C15 VR3 15 VR3 C16 C16 C 0 1 N N N N N N -1.003 12.143 13.246 -5.964 0.086 0.432 C16 VR3 16 VR3 C17 C17 C 0 1 N N N N N N -3.421 11.961 13.833 -4.588 -1.941 -0.044 C17 VR3 17 VR3 C18 C18 C 0 1 N N N N N N -2.241 12.972 13.657 -6.031 -1.456 0.309 C18 VR3 18 VR3 C C19 C 0 1 N N N N N N -3.928 6.727 12.043 -0.449 1.488 -1.474 C VR3 19 VR3 O25 O1 O 0 1 N N N N N N -4.714 3.044 15.166 3.987 0.669 -0.412 O25 VR3 20 VR3 S22 S1 S 0 1 N N N N N N -5.361 2.609 16.525 5.009 -0.285 0.190 S22 VR3 21 VR3 O20 O2 O 0 1 N N N N N N -6.814 3.070 16.524 6.284 0.165 -0.248 O20 VR3 22 VR3 O21 O3 O 0 1 N N N N N N -4.602 3.088 17.686 4.664 -0.430 1.560 O21 VR3 23 VR3 N19 N1 N 0 1 N N N N N N -5.172 1.102 16.395 4.769 -1.766 -0.512 N19 VR3 24 VR3 H1 H1 H 0 1 N N N N N N -3.781 4.229 12.882 2.540 2.511 0.794 H1 VR3 25 VR3 H2 H2 H 0 1 N N N N N N -2.483 3.507 13.893 1.856 2.263 -0.830 H2 VR3 26 VR3 H3 H3 H 0 1 N N N N N N -3.519 4.666 15.900 2.697 0.027 1.068 H3 VR3 27 VR3 H4 H4 H 0 1 N N N N N N -5.809 5.577 15.620 1.912 -0.018 -1.883 H4 VR3 28 VR3 H5 H5 H 0 1 N N N N N N -5.780 5.169 13.871 2.332 -1.426 -0.874 H5 VR3 29 VR3 H6 H6 H 0 1 N N N N N N -5.953 7.808 15.610 0.518 -2.563 -0.463 H6 VR3 30 VR3 H7 H7 H 0 1 N N N N N N -2.186 8.063 14.826 -1.550 0.398 1.540 H7 VR3 31 VR3 H8 H8 H 0 1 N N N N N N -3.946 9.470 15.809 -1.911 -2.789 -0.244 H8 VR3 32 VR3 H9 H9 H 0 1 N N N N N N -5.298 9.944 14.725 -1.497 -2.037 1.316 H9 VR3 33 VR3 H10 H10 H 0 1 N N N N N N -4.060 9.342 12.771 -2.428 -0.554 -1.224 H10 VR3 34 VR3 H11 H11 H 0 1 N N N N N N -1.701 5.608 12.993 0.656 1.185 1.761 H11 VR3 35 VR3 H12 H12 H 0 1 N N N N N N -1.967 5.779 14.761 0.084 2.629 0.890 H12 VR3 36 VR3 H13 H13 H 0 1 N N N N N N -1.709 8.071 11.825 -2.039 2.652 0.792 H13 VR3 37 VR3 H14 H14 H 0 1 N N N N N N -0.644 7.436 13.125 -2.543 2.054 -0.800 H14 VR3 38 VR3 H15 H15 H 0 1 N N N N N N -2.141 10.559 14.862 -3.636 -0.849 1.569 H15 VR3 39 VR3 H16 H16 H 0 1 N N N N N N 0.079 9.626 12.090 -3.921 1.448 1.861 H16 VR3 40 VR3 H17 H17 H 0 1 N N N N N N -0.099 9.635 13.877 -4.529 2.530 0.577 H17 VR3 41 VR3 H18 H18 H 0 1 N N N N N N -2.874 11.744 11.348 -3.372 0.760 -1.727 H18 VR3 42 VR3 H19 H19 H 0 1 N N N N N N -1.357 11.046 10.687 -4.864 -0.182 -1.966 H19 VR3 43 VR3 H20 H20 H 0 1 N N N N N N -2.722 9.967 11.134 -4.952 1.580 -1.727 H20 VR3 44 VR3 H21 H21 H 0 1 N N N N N N -0.312 12.019 14.093 -6.183 0.394 1.454 H21 VR3 45 VR3 H22 H22 H 0 1 N N N N N N -0.472 12.616 12.407 -6.665 0.551 -0.261 H22 VR3 46 VR3 H23 H23 H 0 1 N N N N N N -3.977 12.147 14.763 -4.468 -2.053 -1.121 H23 VR3 47 VR3 H24 H24 H 0 1 N N N N N N -4.113 11.995 12.979 -4.349 -2.873 0.468 H24 VR3 48 VR3 H25 H25 H 0 1 N N N N N N -2.048 13.498 14.604 -6.346 -1.894 1.256 H25 VR3 49 VR3 H26 H26 H 0 1 N N N N N N -2.484 13.705 12.873 -6.724 -1.739 -0.484 H26 VR3 50 VR3 H27 H27 H 0 1 N N N N N N -4.610 7.568 11.849 0.531 1.658 -1.918 H27 VR3 51 VR3 H28 H28 H 0 1 N N N N N N -3.075 6.779 11.350 -1.050 0.874 -2.144 H28 VR3 52 VR3 H29 H29 H 0 1 N N N N N N -4.465 5.779 11.894 -0.947 2.444 -1.313 H29 VR3 53 VR3 H30 H30 H 0 1 N N N N N N -5.542 0.648 17.206 4.071 -1.881 -1.175 H30 VR3 54 VR3 H31 H31 H 0 1 N N N N N N -5.653 0.775 15.581 5.327 -2.518 -0.259 H31 VR3 55 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal VR3 C15 C13 SING N N 1 VR3 C C5 SING N N 2 VR3 C13 C14 SING N N 3 VR3 C13 C16 SING N N 4 VR3 C13 C12 SING N N 5 VR3 C11 C14 SING N N 6 VR3 C11 C7 SING N N 7 VR3 C16 C18 SING N N 8 VR3 C5 C10 SING N N 9 VR3 C5 C7 SING N N 10 VR3 C5 C4 SING N N 11 VR3 C18 C17 SING N N 12 VR3 C9 C7 SING N N 13 VR3 C9 C12 SING N N 14 VR3 C9 C8 SING N N 15 VR3 C10 C1 SING N N 16 VR3 C1 C2 SING N N 17 VR3 C17 C12 SING N N 18 VR3 C4 C3 SING N N 19 VR3 C4 C6 DOUB N N 20 VR3 C3 C2 SING N N 21 VR3 C8 C6 SING N N 22 VR3 C2 O25 SING N N 23 VR3 O25 S22 SING N N 24 VR3 N19 S22 SING N N 25 VR3 O20 S22 DOUB N N 26 VR3 S22 O21 DOUB N N 27 VR3 C1 H1 SING N N 28 VR3 C1 H2 SING N N 29 VR3 C2 H3 SING N N 30 VR3 C3 H4 SING N N 31 VR3 C3 H5 SING N N 32 VR3 C6 H6 SING N N 33 VR3 C7 H7 SING N N 34 VR3 C8 H8 SING N N 35 VR3 C8 H9 SING N N 36 VR3 C9 H10 SING N N 37 VR3 C10 H11 SING N N 38 VR3 C10 H12 SING N N 39 VR3 C11 H13 SING N N 40 VR3 C11 H14 SING N N 41 VR3 C12 H15 SING N N 42 VR3 C14 H16 SING N N 43 VR3 C14 H17 SING N N 44 VR3 C15 H18 SING N N 45 VR3 C15 H19 SING N N 46 VR3 C15 H20 SING N N 47 VR3 C16 H21 SING N N 48 VR3 C16 H22 SING N N 49 VR3 C17 H23 SING N N 50 VR3 C17 H24 SING N N 51 VR3 C18 H25 SING N N 52 VR3 C18 H26 SING N N 53 VR3 C H27 SING N N 54 VR3 C H28 SING N N 55 VR3 C H29 SING N N 56 VR3 N19 H30 SING N N 57 VR3 N19 H31 SING N N 58 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor VR3 InChI InChI 1.06 "InChI=1S/C19H31NO3S/c1-18-9-3-4-16(18)15-6-5-13-12-14(23-24(20,21)22)7-11-19(13,2)17(15)8-10-18/h5,14-17H,3-4,6-12H2,1-2H3,(H2,20,21,22)/t14-,15-,16-,17-,18-,19-/m0/s1" VR3 InChIKey InChI 1.06 YUEPLWPAJBAOGC-DYKIIFRCSA-N VR3 SMILES_CANONICAL CACTVS 3.385 "C[C@@]12CCC[C@H]1[C@@H]3CC=C4C[C@H](CC[C@]4(C)[C@H]3CC2)O[S](N)(=O)=O" VR3 SMILES CACTVS 3.385 "C[C]12CCC[CH]1[CH]3CC=C4C[CH](CC[C]4(C)[CH]3CC2)O[S](N)(=O)=O" VR3 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C[C@@]12CCC[C@H]1[C@@H]3CC=C4C[C@H](CC[C@@]4([C@H]3CC2)C)OS(=O)(=O)N" VR3 SMILES "OpenEye OEToolkits" 2.0.7 "CC12CCCC1C3CC=C4CC(CCC4(C3CC2)C)OS(=O)(=O)N" # _pdbx_chem_comp_identifier.comp_id VR3 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "[(3~{S},8~{S},9~{S},10~{R},13~{S},14~{S})-10,13-dimethyl-2,3,4,7,8,9,11,12,14,15,16,17-dodecahydro-1~{H}-cyclopenta[a]phenanthren-3-yl] sulfamate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site VR3 "Create component" 2023-03-29 PDBE VR3 "Initial release" 2024-04-10 RCSB #