data_VR5 # _chem_comp.id VR5 _chem_comp.name "(4P)-2-amino-4-{4-[(1R,5S)-3,8-diazabicyclo[3.2.1]octan-3-yl]-8-fluoro-2-{[(2R,4R,7aS)-2-fluorotetrahydro-1H-pyrrolizin-7a(5H)-yl]methoxy}-6-(trifluoromethyl)quinazolin-7-yl}-7-fluoro-1-benzothiophene-3-carbonitrile" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C32 H29 F6 N7 O S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-09-15 _chem_comp.pdbx_modified_date 2023-11-03 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 673.674 _chem_comp.one_letter_code ? _chem_comp.three_letter_code VR5 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8TXH _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal VR5 C11 C1 C 0 1 N N N N N N -3.427 26.170 -6.752 2.700 0.437 -2.051 C11 VR5 1 VR5 C7 C2 C 0 1 Y N N N N N -6.868 24.143 -4.510 3.909 0.743 2.288 C7 VR5 2 VR5 C6 C3 C 0 1 Y N N N N N -8.126 24.638 -4.843 5.059 1.472 2.532 C6 VR5 3 VR5 C21 C4 C 0 1 Y N N N N N -2.472 22.676 -5.095 1.201 -2.321 0.238 C21 VR5 4 VR5 C10 C5 C 0 1 Y N N N N N -4.828 26.428 -6.786 3.835 1.130 -1.521 C10 VR5 5 VR5 C20 C6 C 0 1 Y N N N N N -1.802 23.246 -3.997 -0.060 -1.710 0.239 C20 VR5 6 VR5 C9 C7 C 0 1 Y N N N N N -5.836 25.737 -6.030 4.149 1.175 -0.094 C9 VR5 7 VR5 C8 C8 C 0 1 Y N N N N N -5.716 24.670 -5.109 3.447 0.585 0.991 C8 VR5 8 VR5 C13 C9 C 0 1 Y N N N N N -4.392 24.123 -4.751 2.219 -0.202 0.735 C13 VR5 9 VR5 C22 C10 C 0 1 Y N N N N N -3.750 23.102 -5.448 2.315 -1.579 0.482 C22 VR5 10 VR5 C15 C11 C 0 1 Y N N N N N -2.436 24.290 -3.288 -0.172 -0.320 0.487 C15 VR5 11 VR5 C5 C12 C 0 1 Y N N N N N -8.253 25.680 -5.751 5.749 2.050 1.488 C5 VR5 12 VR5 C14 C13 C 0 1 Y N N N N N -3.705 24.698 -3.684 0.984 0.432 0.730 C14 VR5 13 VR5 C4 C14 C 0 1 Y N N N N N -7.109 26.238 -6.342 5.300 1.910 0.169 C4 VR5 14 VR5 C19 C15 C 0 1 Y N N N N N -0.527 22.880 -3.540 -1.246 -2.444 -0.004 C19 VR5 15 VR5 C2 C16 C 0 1 Y N N N N N -5.352 27.386 -7.624 4.725 1.809 -2.302 C2 VR5 16 VR5 C17 C17 C 0 1 Y N N N N N -0.624 24.484 -1.902 -2.462 -0.491 0.249 C17 VR5 17 VR5 C39 C18 C 0 1 N N N N N N 3.791 25.935 0.879 -6.003 2.357 2.710 C39 VR5 18 VR5 C30 C19 C 0 1 N N N N N N 1.427 20.313 -1.936 -3.598 -2.733 0.535 C30 VR5 19 VR5 C31 C20 C 0 1 N N N N N N 0.205 19.536 -2.438 -3.479 -2.458 -0.979 C31 VR5 20 VR5 C38 C21 C 0 1 N N N N N N 2.769 25.008 1.519 -5.991 1.320 1.557 C38 VR5 21 VR5 C45 C22 C 0 1 N N N N N N 0.268 25.565 1.917 -5.774 1.766 -0.909 C45 VR5 22 VR5 C28 C23 C 0 1 N N N N N N 1.759 21.929 -3.893 -1.911 -4.545 0.796 C28 VR5 23 VR5 C33 C24 C 0 1 N N N N N N -0.264 20.631 -4.666 -1.720 -4.110 -1.594 C33 VR5 24 VR5 C40 C25 C 0 1 N N N N N N 3.076 27.261 0.764 -6.058 3.693 1.929 C40 VR5 25 VR5 C42 C26 C 0 1 N N N N N N 0.568 27.779 1.060 -5.850 4.122 -0.438 C42 VR5 26 VR5 C29 C27 C 0 1 N N R N N N 2.230 20.639 -3.193 -3.418 -4.264 0.674 C29 VR5 27 VR5 C32 C28 C 0 1 N N S N N N 0.370 19.427 -3.950 -3.236 -3.847 -1.613 C32 VR5 28 VR5 C43 C29 C 0 1 N N R N N N 0.151 27.029 2.301 -5.623 3.140 -1.614 C43 VR5 29 VR5 C37 C30 C 0 1 N N S N N N 1.426 25.457 0.917 -5.144 2.019 0.475 C37 VR5 30 VR5 C36 C31 C 0 1 N N N N N N 1.093 24.579 -0.263 -3.699 1.518 0.512 C36 VR5 31 VR5 C23 C32 C 0 1 N N N N N N -4.433 22.453 -6.584 3.667 -2.244 0.480 C23 VR5 32 VR5 N12 N1 N 0 1 N N N N N N -2.283 25.991 -6.702 1.799 -0.113 -2.471 N12 VR5 33 VR5 N16 N2 N 0 1 Y N N N N N -1.844 24.922 -2.251 -1.392 0.242 0.481 N16 VR5 34 VR5 N18 N3 N 0 1 Y N N N N N 0.052 23.502 -2.493 -2.402 -1.796 0.012 N18 VR5 35 VR5 N27 N4 N 0 1 N N N N N N 0.300 21.880 -4.147 -1.199 -3.800 -0.252 N27 VR5 36 VR5 N1 N5 N 0 1 N N N N N N -4.663 28.164 -8.469 4.642 1.911 -3.674 N1 VR5 37 VR5 N34 N6 N 0 1 N N N N N N 1.867 19.507 -4.102 -3.854 -4.799 -0.645 N34 VR5 38 VR5 N41 N7 N 0 1 N N N N N N 1.638 26.904 0.428 -5.218 3.473 0.732 N41 VR5 39 VR5 O35 O1 O 0 1 N N N N N N -0.104 25.133 -0.802 -3.674 0.113 0.253 O35 VR5 40 VR5 F47 F1 F 0 1 N N N N N N -9.472 26.167 -6.080 6.871 2.760 1.741 F47 VR5 41 VR5 F46 F2 F 0 1 N N N N N N -4.268 25.729 -3.016 0.897 1.758 0.975 F46 VR5 42 VR5 F44 F3 F 0 1 N N N N N N 1.035 27.318 3.313 -6.600 3.306 -2.601 F44 VR5 43 VR5 F24 F4 F 0 1 N N N N N N -3.733 21.410 -7.081 4.267 -2.082 1.733 F24 VR5 44 VR5 F25 F5 F 0 1 N N N N N N -5.629 21.922 -6.214 3.516 -3.608 0.207 F25 VR5 45 VR5 F26 F6 F 0 1 N N N N N N -4.651 23.276 -7.632 4.473 -1.658 -0.502 F26 VR5 46 VR5 S3 S1 S 0 1 Y N N N N N -7.049 27.537 -7.481 5.985 2.536 -1.326 S3 VR5 47 VR5 H1 H1 H 0 1 N N N N N N -6.779 23.347 -3.785 3.372 0.292 3.109 H1 VR5 48 VR5 H2 H2 H 0 1 N N N N N N -9.008 24.209 -4.392 5.417 1.588 3.545 H2 VR5 49 VR5 H3 H3 H 0 1 N N N N N N -1.990 21.900 -5.670 1.288 -3.381 0.049 H3 VR5 50 VR5 H4 H4 H 0 1 N N N N N N 4.085 25.564 -0.114 -6.887 2.235 3.336 H4 VR5 51 VR5 H5 H5 H 0 1 N N N N N N 4.684 26.028 1.515 -5.093 2.289 3.306 H5 VR5 52 VR5 H6 H6 H 0 1 N N N N N N 2.021 19.696 -1.246 -2.814 -2.207 1.080 H6 VR5 53 VR5 H7 H7 H 0 1 N N N N N N 1.115 21.236 -1.426 -4.580 -2.432 0.900 H7 VR5 54 VR5 H8 H8 H 0 1 N N N N N N -0.720 20.078 -2.192 -4.403 -2.023 -1.360 H8 VR5 55 VR5 H9 H9 H 0 1 N N N N N N 0.175 18.535 -1.983 -2.637 -1.794 -1.179 H9 VR5 56 VR5 H10 H10 H 0 1 N N N N N N 2.980 23.959 1.264 -5.518 0.392 1.877 H10 VR5 57 VR5 H11 H11 H 0 1 N N N N N N 2.766 25.126 2.613 -7.003 1.132 1.196 H11 VR5 58 VR5 H12 H12 H 0 1 N N N N N N -0.667 25.220 1.451 -6.826 1.497 -0.810 H12 VR5 59 VR5 H13 H13 H 0 1 N N N N N N 0.480 24.956 2.808 -5.228 0.993 -1.449 H13 VR5 60 VR5 H14 H14 H 0 1 N N N N N N 2.290 22.035 -4.851 -1.558 -4.224 1.776 H14 VR5 61 VR5 H15 H15 H 0 1 N N N N N N 1.986 22.793 -3.250 -1.728 -5.613 0.674 H15 VR5 62 VR5 H16 H16 H 0 1 N N N N N N -1.351 20.624 -4.496 -1.532 -5.158 -1.826 H16 VR5 63 VR5 H17 H17 H 0 1 N N N N N N -0.061 20.561 -5.745 -1.228 -3.477 -2.332 H17 VR5 64 VR5 H18 H18 H 0 1 N N N N N N 3.520 27.872 -0.036 -7.083 3.919 1.636 H18 VR5 65 VR5 H19 H19 H 0 1 N N N N N N 3.126 27.811 1.715 -5.651 4.503 2.535 H19 VR5 66 VR5 H20 H20 H 0 1 N N N N N N 0.977 28.766 1.321 -5.370 5.078 -0.646 H20 VR5 67 VR5 H21 H21 H 0 1 N N N N N N -0.285 27.905 0.377 -6.916 4.264 -0.264 H21 VR5 68 VR5 H22 H22 H 0 1 N N N N N N 3.310 20.669 -2.985 -3.985 -4.675 1.509 H22 VR5 69 VR5 H23 H23 H 0 1 N N N N N N -0.030 18.477 -4.333 -3.656 -3.926 -2.616 H23 VR5 70 VR5 H24 H24 H 0 1 N N N N N N -0.888 27.273 2.566 -4.623 3.256 -2.033 H24 VR5 71 VR5 H25 H25 H 0 1 N N N N N N 0.928 23.541 0.061 -3.115 2.038 -0.248 H25 VR5 72 VR5 H26 H26 H 0 1 N N N N N N 1.902 24.607 -1.007 -3.271 1.714 1.495 H26 VR5 73 VR5 H27 H27 H 0 1 N N N N N N -5.292 28.781 -8.942 5.313 2.412 -4.164 H27 VR5 74 VR5 H28 H28 H 0 1 N N N N N N -3.992 28.700 -7.957 3.914 1.481 -4.149 H28 VR5 75 VR5 H29 H29 H 0 1 N N N N N N 2.305 18.656 -3.811 -4.860 -4.792 -0.723 H29 VR5 76 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal VR5 N1 C2 SING N N 1 VR5 F26 C23 SING N N 2 VR5 C2 S3 SING Y N 3 VR5 C2 C10 DOUB Y N 4 VR5 S3 C4 SING Y N 5 VR5 F24 C23 SING N N 6 VR5 C10 C11 SING N N 7 VR5 C10 C9 SING Y N 8 VR5 C11 N12 TRIP N N 9 VR5 C23 F25 SING N N 10 VR5 C23 C22 SING N N 11 VR5 C4 C9 DOUB Y N 12 VR5 C4 C5 SING Y N 13 VR5 F47 C5 SING N N 14 VR5 C9 C8 SING Y N 15 VR5 C5 C6 DOUB Y N 16 VR5 C22 C21 DOUB Y N 17 VR5 C22 C13 SING Y N 18 VR5 C8 C13 SING N N 19 VR5 C8 C7 DOUB Y N 20 VR5 C21 C20 SING Y N 21 VR5 C6 C7 SING Y N 22 VR5 C13 C14 DOUB Y N 23 VR5 C33 N27 SING N N 24 VR5 C33 C32 SING N N 25 VR5 N27 C28 SING N N 26 VR5 N27 C19 SING N N 27 VR5 N34 C32 SING N N 28 VR5 N34 C29 SING N N 29 VR5 C20 C19 DOUB Y N 30 VR5 C20 C15 SING Y N 31 VR5 C32 C31 SING N N 32 VR5 C28 C29 SING N N 33 VR5 C14 C15 SING Y N 34 VR5 C14 F46 SING N N 35 VR5 C19 N18 SING Y N 36 VR5 C15 N16 DOUB Y N 37 VR5 C29 C30 SING N N 38 VR5 N18 C17 DOUB Y N 39 VR5 C31 C30 SING N N 40 VR5 N16 C17 SING Y N 41 VR5 C17 O35 SING N N 42 VR5 O35 C36 SING N N 43 VR5 C36 C37 SING N N 44 VR5 N41 C40 SING N N 45 VR5 N41 C37 SING N N 46 VR5 N41 C42 SING N N 47 VR5 C40 C39 SING N N 48 VR5 C39 C38 SING N N 49 VR5 C37 C38 SING N N 50 VR5 C37 C45 SING N N 51 VR5 C42 C43 SING N N 52 VR5 C45 C43 SING N N 53 VR5 C43 F44 SING N N 54 VR5 C7 H1 SING N N 55 VR5 C6 H2 SING N N 56 VR5 C21 H3 SING N N 57 VR5 C39 H4 SING N N 58 VR5 C39 H5 SING N N 59 VR5 C30 H6 SING N N 60 VR5 C30 H7 SING N N 61 VR5 C31 H8 SING N N 62 VR5 C31 H9 SING N N 63 VR5 C38 H10 SING N N 64 VR5 C38 H11 SING N N 65 VR5 C45 H12 SING N N 66 VR5 C45 H13 SING N N 67 VR5 C28 H14 SING N N 68 VR5 C28 H15 SING N N 69 VR5 C33 H16 SING N N 70 VR5 C33 H17 SING N N 71 VR5 C40 H18 SING N N 72 VR5 C40 H19 SING N N 73 VR5 C42 H20 SING N N 74 VR5 C42 H21 SING N N 75 VR5 C29 H22 SING N N 76 VR5 C32 H23 SING N N 77 VR5 C43 H24 SING N N 78 VR5 C36 H25 SING N N 79 VR5 C36 H26 SING N N 80 VR5 N1 H27 SING N N 81 VR5 N1 H28 SING N N 82 VR5 N34 H29 SING N N 83 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor VR5 SMILES ACDLabs 12.01 "FC(F)(F)c1cc2c(nc(OCC34CCCN4CC(F)C3)nc2c(F)c1c1ccc(F)c2sc(N)c(C#N)c12)N1CC2CCC(N2)C1" VR5 InChI InChI 1.06 "InChI=1S/C32H29F6N7OS/c33-15-9-31(6-1-7-45(31)11-15)14-46-30-42-26-19(29(43-30)44-12-16-2-3-17(13-44)41-16)8-21(32(36,37)38)24(25(26)35)18-4-5-22(34)27-23(18)20(10-39)28(40)47-27/h4-5,8,15-17,41H,1-3,6-7,9,11-14,40H2/t15-,16-,17+,31+/m1/s1" VR5 InChIKey InChI 1.06 KFVWCOMHUKVKIB-QHXZRSOMSA-N VR5 SMILES_CANONICAL CACTVS 3.385 "Nc1sc2c(F)ccc(c3c(F)c4nc(OC[C@@]56CCCN5C[C@H](F)C6)nc(N7C[C@H]8CC[C@@H](C7)N8)c4cc3C(F)(F)F)c2c1C#N" VR5 SMILES CACTVS 3.385 "Nc1sc2c(F)ccc(c3c(F)c4nc(OC[C]56CCCN5C[CH](F)C6)nc(N7C[CH]8CC[CH](C7)N8)c4cc3C(F)(F)F)c2c1C#N" VR5 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1cc(c2c(c1c3c(cc4c(c3F)nc(nc4N5C[C@H]6CC[C@@H](C5)N6)OC[C@@]78CCCN7C[C@@H](C8)F)C(F)(F)F)c(c(s2)N)C#N)F" VR5 SMILES "OpenEye OEToolkits" 2.0.7 "c1cc(c2c(c1c3c(cc4c(c3F)nc(nc4N5CC6CCC(C5)N6)OCC78CCCN7CC(C8)F)C(F)(F)F)c(c(s2)N)C#N)F" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier VR5 "SYSTEMATIC NAME" ACDLabs 12.01 "(4P)-2-amino-4-{4-[(1R,5S)-3,8-diazabicyclo[3.2.1]octan-3-yl]-8-fluoro-2-{[(2R,4R,7aS)-2-fluorotetrahydro-1H-pyrrolizin-7a(5H)-yl]methoxy}-6-(trifluoromethyl)quinazolin-7-yl}-7-fluoro-1-benzothiophene-3-carbonitrile" VR5 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "2-azanyl-4-[4-[(1~{R},5~{S})-3,8-diazabicyclo[3.2.1]octan-3-yl]-8-fluoranyl-2-[[(2~{R},8~{S})-2-fluoranyl-1,2,3,5,6,7-hexahydropyrrolizin-8-yl]methoxy]-6-(trifluoromethyl)quinazolin-7-yl]-7-fluoranyl-1-benzothiophene-3-carbonitrile" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site VR5 "Create component" 2023-09-15 RCSB VR5 "Initial release" 2023-11-08 RCSB #