data_VR9 # _chem_comp.id VR9 _chem_comp.name "N-[2-(5-chloro-2-{[(4R)-2-cyanoindolizin-8-yl]oxy}phenoxy)ethyl]-N-methylpropanamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C21 H20 Cl N3 O3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-09-15 _chem_comp.pdbx_modified_date 2023-11-03 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 397.855 _chem_comp.one_letter_code ? _chem_comp.three_letter_code VR9 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8U6J _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal VR9 C10 C1 C 0 1 Y N N N N N 47.866 -13.215 19.545 0.879 3.120 -0.294 C10 VR9 1 VR9 C13 C2 C 0 1 Y N N N N N 47.082 -13.095 24.041 1.677 -0.709 -1.442 C13 VR9 2 VR9 C15 C3 C 0 1 Y N N N N N 46.038 -11.033 24.516 3.496 -1.356 -2.860 C15 VR9 3 VR9 C17 C4 C 0 1 Y N N N N N 47.510 -13.188 25.382 2.555 -0.806 -0.333 C17 VR9 4 VR9 C20 C5 C 0 1 N N N N N N 49.039 -14.220 28.679 3.865 -0.745 3.056 C20 VR9 5 VR9 C11 C6 C 0 1 Y N N N N N 48.175 -13.339 20.915 1.147 1.832 -0.722 C11 VR9 6 VR9 C12 C7 C 0 1 Y N N N N N 47.246 -13.931 21.782 0.117 0.914 -0.842 C12 VR9 7 VR9 C14 C8 C 0 1 Y N N N N N 46.347 -12.015 23.621 2.150 -0.983 -2.691 C14 VR9 8 VR9 C16 C9 C 0 1 Y N N N N N 46.478 -11.147 25.831 4.321 -1.445 -1.801 C16 VR9 9 VR9 C18 C10 C 0 1 Y N N N N N 48.248 -14.105 26.132 2.363 -0.595 1.017 C18 VR9 10 VR9 C19 C11 C 0 1 Y N N N N N 48.337 -13.582 27.467 3.598 -0.843 1.653 C19 VR9 11 VR9 C1 C12 C 0 1 N N N N N N 43.151 -18.766 21.239 -4.852 -1.363 1.772 C1 VR9 12 VR9 C2 C13 C 0 1 N N N N N N 44.785 -18.913 23.186 -3.371 -2.356 0.110 C2 VR9 13 VR9 C21 C14 C 0 1 Y N N N N N 47.637 -12.364 27.428 4.502 -1.197 0.670 C21 VR9 14 VR9 C3 C15 C 0 1 N N N N N N 45.714 -18.500 24.303 -3.070 -3.459 1.092 C3 VR9 15 VR9 C4 C16 C 0 1 N N N N N N 45.864 -18.888 25.549 -2.084 -4.446 0.463 C4 VR9 16 VR9 C5 C17 C 0 1 N N N N N N 43.453 -16.667 22.749 -4.515 -0.294 -0.505 C5 VR9 17 VR9 C6 C18 C 0 1 N N N N N N 44.084 -15.726 21.665 -3.514 0.847 -0.313 C6 VR9 18 VR9 C7 C19 C 0 1 Y N N N N N 46.055 -14.408 21.278 -1.187 1.290 -0.531 C7 VR9 19 VR9 C8 C20 C 0 1 Y N N N N N 45.742 -14.290 19.928 -1.449 2.581 -0.104 C8 VR9 20 VR9 C9 C21 C 0 1 Y N N N N N 46.649 -13.689 19.044 -0.415 3.492 0.019 C9 VR9 21 VR9 N1 N1 N 0 1 N N N N N N 43.777 -18.083 22.398 -4.221 -1.366 0.449 N1 VR9 22 VR9 N2 N2 N 0 1 Y N N N N N 47.207 -12.231 26.220 3.868 -1.174 -0.530 N2 VR9 23 VR9 N3 N3 N 0 1 N N N N N N 49.562 -14.688 29.578 4.076 -0.668 4.170 N3 VR9 24 VR9 O1 O1 O 0 1 N N N N N N 44.987 -19.953 22.829 -2.849 -2.359 -0.984 O1 VR9 25 VR9 O2 O2 O 0 1 N N N N N N 45.182 -15.004 22.211 -2.201 0.391 -0.648 O2 VR9 26 VR9 O3 O3 O 0 1 N N N N N N 47.447 -14.135 23.171 0.379 -0.353 -1.262 O3 VR9 27 VR9 CL1 CL1 CL 0 0 N N N N N N 46.232 -13.542 17.312 -0.746 5.110 0.555 CL1 VR9 28 VR9 H12 H1 H 0 1 N N N N N N 48.575 -12.750 18.876 1.684 3.835 -0.201 H12 VR9 29 VR9 H15 H2 H 0 1 N N N N N N 45.458 -10.176 24.207 3.871 -1.573 -3.850 H15 VR9 30 VR9 H13 H3 H 0 1 N N N N N N 49.121 -12.980 21.294 2.159 1.543 -0.962 H13 VR9 31 VR9 H14 H4 H 0 1 N N N N N N 46.017 -11.943 22.595 1.494 -0.914 -3.547 H14 VR9 32 VR9 H16 H5 H 0 1 N N N N N N 46.241 -10.373 26.546 5.351 -1.734 -1.950 H16 VR9 33 VR9 H17 H6 H 0 1 N N N N N N 48.672 -15.032 25.776 1.442 -0.296 1.496 H17 VR9 34 VR9 H2 H7 H 0 1 N N N N N N 43.533 -19.795 21.169 -5.794 -1.909 1.726 H2 VR9 35 VR9 H3 H8 H 0 1 N N N N N N 42.059 -18.788 21.373 -4.188 -1.842 2.492 H3 VR9 36 VR9 H1 H9 H 0 1 N N N N N N 43.396 -18.221 20.316 -5.042 -0.335 2.081 H1 VR9 37 VR9 H18 H10 H 0 1 N N N N N N 47.489 -11.676 28.247 5.539 -1.450 0.831 H18 VR9 38 VR9 H19 H11 H 0 1 N N N N N N 46.712 -18.660 23.870 -2.631 -3.033 1.994 H19 VR9 39 VR9 H4 H12 H 0 1 N N N N N N 45.525 -17.421 24.399 -3.992 -3.980 1.347 H4 VR9 40 VR9 H6 H13 H 0 1 N N N N N N 46.675 -18.312 26.018 -2.523 -4.872 -0.440 H6 VR9 41 VR9 H20 H14 H 0 1 N N N N N N 44.928 -18.719 26.101 -1.161 -3.924 0.207 H20 VR9 42 VR9 H5 H15 H 0 1 N N N N N N 46.115 -19.959 25.572 -1.866 -5.244 1.172 H5 VR9 43 VR9 H8 H16 H 0 1 N N N N N N 43.870 -16.425 23.738 -5.525 0.077 -0.335 H8 VR9 44 VR9 H7 H17 H 0 1 N N N N N N 42.362 -16.530 22.768 -4.435 -0.680 -1.521 H7 VR9 45 VR9 H10 H18 H 0 1 N N N N N N 43.321 -15.015 21.315 -3.785 1.681 -0.960 H10 VR9 46 VR9 H9 H19 H 0 1 N N N N N N 44.435 -16.334 20.818 -3.530 1.174 0.727 H9 VR9 47 VR9 H11 H20 H 0 1 N N N N N N 44.798 -14.662 19.560 -2.460 2.875 0.137 H11 VR9 48 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal VR9 CL1 C9 SING N N 1 VR9 C9 C10 DOUB Y N 2 VR9 C9 C8 SING Y N 3 VR9 C10 C11 SING Y N 4 VR9 C8 C7 DOUB Y N 5 VR9 C11 C12 DOUB Y N 6 VR9 C1 N1 SING N N 7 VR9 C7 C12 SING Y N 8 VR9 C7 O2 SING N N 9 VR9 C6 O2 SING N N 10 VR9 C6 C5 SING N N 11 VR9 C12 O3 SING N N 12 VR9 N1 C5 SING N N 13 VR9 N1 C2 SING N N 14 VR9 O1 C2 DOUB N N 15 VR9 O3 C13 SING N N 16 VR9 C2 C3 SING N N 17 VR9 C14 C13 DOUB Y N 18 VR9 C14 C15 SING Y N 19 VR9 C13 C17 SING Y N 20 VR9 C3 C4 SING N N 21 VR9 C15 C16 DOUB Y N 22 VR9 C17 C18 DOUB Y N 23 VR9 C17 N2 SING Y N 24 VR9 C16 N2 SING Y N 25 VR9 C18 C19 SING Y N 26 VR9 N2 C21 SING Y N 27 VR9 C21 C19 DOUB Y N 28 VR9 C19 C20 SING N N 29 VR9 C20 N3 TRIP N N 30 VR9 C10 H12 SING N N 31 VR9 C15 H15 SING N N 32 VR9 C11 H13 SING N N 33 VR9 C14 H14 SING N N 34 VR9 C16 H16 SING N N 35 VR9 C18 H17 SING N N 36 VR9 C1 H2 SING N N 37 VR9 C1 H3 SING N N 38 VR9 C1 H1 SING N N 39 VR9 C21 H18 SING N N 40 VR9 C3 H19 SING N N 41 VR9 C3 H4 SING N N 42 VR9 C4 H6 SING N N 43 VR9 C4 H20 SING N N 44 VR9 C4 H5 SING N N 45 VR9 C5 H8 SING N N 46 VR9 C5 H7 SING N N 47 VR9 C6 H10 SING N N 48 VR9 C6 H9 SING N N 49 VR9 C8 H11 SING N N 50 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor VR9 SMILES ACDLabs 12.01 "CCC(=O)N(C)CCOc1cc(Cl)ccc1Oc1cccn2cc(cc12)C#N" VR9 InChI InChI 1.06 "InChI=1S/C21H20ClN3O3/c1-3-21(26)24(2)9-10-27-20-12-16(22)6-7-19(20)28-18-5-4-8-25-14-15(13-23)11-17(18)25/h4-8,11-12,14H,3,9-10H2,1-2H3" VR9 InChIKey InChI 1.06 JGVPYFGTILBIQL-UHFFFAOYSA-N VR9 SMILES_CANONICAL CACTVS 3.385 "CCC(=O)N(C)CCOc1cc(Cl)ccc1Oc2cccn3cc(cc23)C#N" VR9 SMILES CACTVS 3.385 "CCC(=O)N(C)CCOc1cc(Cl)ccc1Oc2cccn3cc(cc23)C#N" VR9 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CCC(=O)N(C)CCOc1cc(ccc1Oc2cccn3c2cc(c3)C#N)Cl" VR9 SMILES "OpenEye OEToolkits" 2.0.7 "CCC(=O)N(C)CCOc1cc(ccc1Oc2cccn3c2cc(c3)C#N)Cl" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier VR9 "SYSTEMATIC NAME" ACDLabs 12.01 "N-[2-(5-chloro-2-{[(4R)-2-cyanoindolizin-8-yl]oxy}phenoxy)ethyl]-N-methylpropanamide" VR9 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "~{N}-[2-[5-chloranyl-2-(2-cyanoindolizin-8-yl)oxy-phenoxy]ethyl]-~{N}-methyl-propanamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site VR9 "Create component" 2023-09-15 RCSB VR9 "Initial release" 2023-11-08 RCSB #