data_VRG # _chem_comp.id VRG _chem_comp.name "N~2~-acetyl-N~5~-[N-(methylcarbamoyl)carbamimidoyl]-L-ornithyl-N-methyl-L-phenylalanyl-L-aspartic acid" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C24 H35 N7 O8" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2008-03-11 _chem_comp.pdbx_modified_date 2012-01-05 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 549.577 _chem_comp.one_letter_code ? _chem_comp.three_letter_code VRG _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 3CHE _chem_comp.pdbx_subcomponent_list "ACE VR0 MEA ASP" _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal VRG CBB CBB C 0 1 N N N 95.624 71.288 -10.194 1.107 -2.874 -2.205 C ACE 1 VRG OAE OAE O 0 1 N N N 95.746 72.007 -11.185 0.760 -1.821 -2.698 O ACE 2 VRG CAB CAB C 0 1 N N N 96.075 69.826 -10.214 1.507 -4.025 -3.091 CH3 ACE 3 VRG CAA CAA C 0 1 N N N 89.384 66.860 -2.394 11.003 1.972 0.577 C1 VR0 4 VRG NAD NAD N 0 1 N N N 92.499 70.621 -3.826 6.132 1.894 -0.362 NH2 VR0 5 VRG OAH OAH O 0 1 N N N 91.235 68.819 -2.510 8.427 2.400 -0.097 O1 VR0 6 VRG OAJ OAJ O 0 1 N N N 96.904 73.787 -8.475 -1.190 -1.824 -1.352 O VR0 7 VRG CAR CAR C 0 1 N N N 92.967 72.225 -7.188 3.095 -1.056 0.147 CG VR0 8 VRG CAS CAS C 0 1 N N N 92.292 72.481 -5.838 4.016 0.137 -0.119 CD VR0 9 VRG CAT CAT C 0 1 N N N 94.074 73.246 -7.452 1.667 -0.701 -0.271 CB VR0 10 VRG NAW NAW N 0 1 N N N 89.448 67.855 -3.474 9.929 0.989 0.734 NH3 VR0 11 VRG NAX NAX N 0 1 N N N 91.291 71.431 -5.605 5.384 -0.204 0.281 NE VR0 12 VRG NAY NAY N 0 1 N N N 90.478 69.639 -4.442 7.681 0.398 0.510 NH1 VR0 13 VRG NAZ NAZ N 0 1 N N N 95.115 71.701 -9.037 1.135 -3.013 -0.865 N VR0 14 VRG CBD CBD C 0 1 N N N 91.414 70.575 -4.594 6.392 0.719 0.133 CZ VR0 15 VRG CBF CBF C 0 1 N N N 90.443 68.738 -3.449 8.670 1.302 0.366 C6 VR0 16 VRG CBH CBH C 0 1 N N N 95.836 74.033 -9.033 -0.679 -1.503 -0.299 C VR0 17 VRG CBK CBK C 0 1 N N S 94.650 73.083 -8.860 0.746 -1.893 -0.004 CA VR0 18 VRG CAC CAC C 0 1 N N N 96.803 75.975 -9.976 -0.770 -0.409 1.876 C1 MEA 19 VRG NBM NBM N 0 1 N N N 95.654 75.067 -9.852 -1.386 -0.798 0.605 N MEA 20 VRG CBL CBL C 0 1 N N S 94.391 75.286 -10.572 -2.772 -0.418 0.317 CA MEA 21 VRG CBG CBG C 0 1 N N N 94.714 75.440 -12.060 -2.897 1.083 0.339 C MEA 22 VRG OAI OAI O 0 1 N N N 94.289 76.401 -12.699 -1.924 1.769 0.572 O MEA 23 VRG CAV CAV C 0 1 N N N 93.740 76.587 -10.100 -3.696 -1.022 1.377 CB MEA 24 VRG CBI CBI C 0 1 Y N N 93.244 76.500 -8.656 -3.664 -2.526 1.273 CG MEA 25 VRG CAQ CAQ C 0 1 Y N N 91.956 76.041 -8.401 -4.565 -3.181 0.454 CD1 MEA 26 VRG CAO CAO C 0 1 Y N N 91.478 76.002 -7.096 -4.533 -4.560 0.356 CE1 MEA 27 VRG CAM CAM C 0 1 Y N N 92.290 76.420 -6.047 -3.606 -5.283 1.083 CZ MEA 28 VRG CAN CAN C 0 1 Y N N 93.578 76.877 -6.302 -2.709 -4.628 1.906 CE2 MEA 29 VRG CAP CAP C 0 1 Y N N 94.057 76.917 -7.607 -2.739 -3.249 2.001 CD2 MEA 30 VRG N N N 0 1 N N N 95.463 74.472 -12.582 -4.089 1.664 0.100 N ASP 31 VRG CA CA C 0 1 N N S 95.876 74.495 -13.992 -4.211 3.124 0.121 CA ASP 32 VRG C C C 0 1 N N N 94.908 73.699 -14.870 -4.431 3.589 1.537 C ASP 33 VRG O O O 0 1 N N N 95.038 73.825 -16.106 -4.482 2.784 2.437 O ASP 34 VRG CB CB C 0 1 N N N 97.301 73.949 -14.114 -5.397 3.549 -0.746 CB ASP 35 VRG CG CG C 0 1 N N N 98.292 74.846 -13.368 -5.122 3.193 -2.184 CG ASP 36 VRG OD1 OD1 O 0 1 N N N 99.186 74.278 -12.704 -4.083 2.654 -2.485 OD1 ASP 37 VRG OD2 OD2 O 0 1 N N N 98.135 76.082 -13.474 -6.030 3.474 -3.131 OD2 ASP 38 VRG OXT OXT O 0 1 N N N 94.047 73.000 -14.293 -4.571 4.898 1.800 OXT ASP 39 VRG HAB HAB H 0 1 N N N 96.183 69.489 -11.256 0.629 -4.631 -3.318 H1 ACE 40 VRG HABA HABA H 0 0 N N N 97.041 69.733 -9.697 1.933 -3.640 -4.017 H2 ACE 41 VRG HABB HABB H 0 0 N N N 95.325 69.204 -9.704 2.248 -4.638 -2.577 H3 ACE 42 VRG HAA HAA H 0 1 N N N 89.368 65.849 -2.827 10.771 2.862 1.162 H5 VR0 43 VRG HAAA HAAA H 0 0 N N N 90.265 66.967 -1.745 11.943 1.543 0.925 H4 VR0 44 VRG HAAB HAAB H 0 0 N N N 88.471 67.020 -1.802 11.097 2.244 -0.475 H3 VR0 45 VRG HNAD HNAD H 0 0 N N N 93.088 71.387 -4.083 5.227 2.119 -0.627 HH22 VR0 46 VRG HAR HAR H 0 1 N N N 93.406 71.216 -7.182 3.439 -1.916 -0.427 HG2 VR0 47 VRG HARA HARA H 0 0 N N N 92.210 72.316 -7.981 3.113 -1.298 1.210 HG3 VR0 48 VRG HAS HAS H 0 1 N N N 91.802 73.466 -5.849 3.673 0.997 0.455 HD2 VR0 49 VRG HASA HASA H 0 0 N N N 93.044 72.467 -5.035 3.998 0.379 -1.182 HD3 VR0 50 VRG HAT HAT H 0 1 N N N 93.656 74.259 -7.352 1.323 0.159 0.304 HB2 VR0 51 VRG HATA HATA H 0 0 N N N 94.881 73.084 -6.723 1.649 -0.458 -1.333 HB3 VR0 52 VRG HNAW HNAW H 0 0 N N N 88.765 67.868 -4.205 10.122 0.114 1.103 HH33 VR0 53 VRG HNAX HNAX H 0 0 N N N 90.503 71.359 -6.217 5.577 -1.079 0.650 HE VR0 54 VRG HNAY HNAY H 0 0 N N N 89.745 69.606 -5.121 7.875 -0.478 0.879 HH11 VR0 55 VRG HNAZ HNAZ H 0 0 N N N 95.048 71.059 -8.273 1.412 -3.854 -0.470 H2 VR0 56 VRG HBK HBK H 0 1 N N N 93.874 73.314 -9.605 0.832 -2.191 1.041 HA VR0 57 VRG HAC HAC H 0 1 N N N 96.979 76.202 -11.038 -0.289 0.562 1.765 HC1 MEA 58 VRG HACA HACA H 0 0 N N N 96.593 76.908 -9.432 -1.536 -0.349 2.648 HC2 MEA 59 VRG HACB HACB H 0 0 N N N 97.697 75.495 -9.551 -0.025 -1.153 2.161 HC3 MEA 60 VRG HBL HBL H 0 1 N N N 93.712 74.440 -10.389 -3.054 -0.792 -0.667 HA MEA 61 VRG HAV HAV H 0 1 N N N 94.485 77.394 -10.165 -3.360 -0.719 2.368 HB1 MEA 62 VRG HAVA HAVA H 0 0 N N N 92.870 76.782 -10.744 -4.714 -0.669 1.215 HB2 MEA 63 VRG HAQ HAQ H 0 1 N N N 91.327 75.715 -9.216 -5.291 -2.616 -0.112 HD1 MEA 64 VRG HAO HAO H 0 1 N N N 90.477 75.648 -6.897 -5.233 -5.071 -0.288 HE1 MEA 65 VRG HAM HAM H 0 1 N N N 91.919 76.390 -5.033 -3.583 -6.360 1.008 HZ MEA 66 VRG HAN HAN H 0 1 N N N 94.207 77.201 -5.486 -1.986 -5.193 2.474 HE2 MEA 67 VRG HAP HAP H 0 1 N N N 95.058 77.271 -7.806 -2.038 -2.737 2.644 HD2 MEA 68 VRG HN HN H 0 1 N N N 95.752 73.711 -12.001 -4.867 1.115 -0.086 H ASP 69 VRG HA HA H 0 1 N N N 95.856 75.535 -14.349 -3.296 3.570 -0.270 HA ASP 70 VRG HB HB H 0 1 N N N 97.336 72.938 -13.682 -6.297 3.034 -0.410 HB2 ASP 71 VRG HBA HBA H 0 1 N N N 97.580 73.923 -15.178 -5.542 4.626 -0.660 HB3 ASP 72 VRG HOD2 HOD2 H 0 0 N N N 98.803 76.531 -12.970 -5.809 3.227 -4.039 HD2 ASP 73 VRG HOXT HOXT H 0 0 N N N 93.499 72.573 -14.941 -4.711 5.148 2.723 HXT ASP 74 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal VRG CAA NAW SING N N 1 VRG NAW CBF SING N N 2 VRG CBF OAH DOUB N N 3 VRG CBF NAY SING N N 4 VRG NAY CBD SING N N 5 VRG CBD NAD DOUB N N 6 VRG CBD NAX SING N N 7 VRG NAX CAS SING N N 8 VRG CAS CAR SING N N 9 VRG CAR CAT SING N N 10 VRG CAT CBK SING N N 11 VRG CBK NAZ SING N N 12 VRG CBK CBH SING N N 13 VRG NAZ CBB SING N N 14 VRG CBB CAB SING N N 15 VRG CBB OAE DOUB N N 16 VRG CBH OAJ DOUB N N 17 VRG CBH NBM SING N N 18 VRG NBM CAC SING N N 19 VRG NBM CBL SING N N 20 VRG CBL CBG SING N N 21 VRG CBL CAV SING N N 22 VRG CBG OAI DOUB N N 23 VRG CBG N SING N N 24 VRG N CA SING N N 25 VRG CA C SING N N 26 VRG CA CB SING N N 27 VRG C OXT SING N N 28 VRG C O DOUB N N 29 VRG CB CG SING N N 30 VRG CG OD2 SING N N 31 VRG CG OD1 DOUB N N 32 VRG CAV CBI SING N N 33 VRG CBI CAP DOUB Y N 34 VRG CBI CAQ SING Y N 35 VRG CAP CAN SING Y N 36 VRG CAN CAM DOUB Y N 37 VRG CAM CAO SING Y N 38 VRG CAO CAQ DOUB Y N 39 VRG CAA HAA SING N N 40 VRG CAA HAAA SING N N 41 VRG CAA HAAB SING N N 42 VRG NAW HNAW SING N N 43 VRG NAY HNAY SING N N 44 VRG NAD HNAD SING N N 45 VRG NAX HNAX SING N N 46 VRG CAS HAS SING N N 47 VRG CAS HASA SING N N 48 VRG CAR HAR SING N N 49 VRG CAR HARA SING N N 50 VRG CAT HAT SING N N 51 VRG CAT HATA SING N N 52 VRG CBK HBK SING N N 53 VRG NAZ HNAZ SING N N 54 VRG CAB HAB SING N N 55 VRG CAB HABA SING N N 56 VRG CAB HABB SING N N 57 VRG CAC HAC SING N N 58 VRG CAC HACA SING N N 59 VRG CAC HACB SING N N 60 VRG CBL HBL SING N N 61 VRG N HN SING N N 62 VRG CA HA SING N N 63 VRG CB HB SING N N 64 VRG CB HBA SING N N 65 VRG CAV HAV SING N N 66 VRG CAV HAVA SING N N 67 VRG CAP HAP SING N N 68 VRG CAN HAN SING N N 69 VRG CAM HAM SING N N 70 VRG CAO HAO SING N N 71 VRG CAQ HAQ SING N N 72 VRG OXT HOXT SING N N 73 VRG OD2 HOD2 SING N N 74 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor VRG SMILES ACDLabs 10.04 "O=C(NC)NC(=[N@H])NCCCC(NC(=O)C)C(=O)N(C(C(=O)NC(C(=O)O)CC(=O)O)Cc1ccccc1)C" VRG InChI InChI 1.03 "InChI=1S/C24H35N7O8/c1-14(32)28-16(10-7-11-27-23(25)30-24(39)26-2)21(36)31(3)18(12-15-8-5-4-6-9-15)20(35)29-17(22(37)38)13-19(33)34/h4-6,8-9,16-18H,7,10-13H2,1-3H3,(H,28,32)(H,29,35)(H,33,34)(H,37,38)(H4,25,26,27,30,39)/t16-,17-,18-/m0/s1" VRG InChIKey InChI 1.03 UFMHANUUWPWJKF-BZSNNMDCSA-N VRG SMILES_CANONICAL CACTVS 3.385 "CNC(=O)NC(=N)NCCC[C@H](NC(C)=O)C(=O)N(C)[C@@H](Cc1ccccc1)C(=O)N[C@@H](CC(O)=O)C(O)=O" VRG SMILES CACTVS 3.385 "CNC(=O)NC(=N)NCCC[CH](NC(C)=O)C(=O)N(C)[CH](Cc1ccccc1)C(=O)N[CH](CC(O)=O)C(O)=O" VRG SMILES_CANONICAL "OpenEye OEToolkits" 1.7.5 "[H]/N=C(\NCCC[C@@H](C(=O)N(C)[C@@H](Cc1ccccc1)C(=O)N[C@@H](CC(=O)O)C(=O)O)NC(=O)C)/NC(=O)NC" VRG SMILES "OpenEye OEToolkits" 1.7.5 "CC(=O)NC(CCCNC(=N)NC(=O)NC)C(=O)N(C)C(Cc1ccccc1)C(=O)NC(CC(=O)O)C(=O)O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier VRG "SYSTEMATIC NAME" ACDLabs 10.04 "N~2~-acetyl-N~5~-[N-(methylcarbamoyl)carbamimidoyl]-L-ornithyl-N-methyl-L-phenylalanyl-L-aspartic acid" VRG "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "(2S)-2-[[(2S)-2-[[(2S)-2-acetamido-5-[(N-(methylcarbamoyl)carbamimidoyl)amino]pentanoyl]-methyl-amino]-3-phenyl-propanoyl]amino]butanedioic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site VRG "Create component" 2008-03-11 RCSB VRG "Other modification" 2010-11-11 RCSB VRG "Modify aromatic_flag" 2011-06-04 RCSB VRG "Modify descriptor" 2011-06-04 RCSB VRG "Modify descriptor" 2012-01-05 RCSB #