data_VRN # _chem_comp.id VRN _chem_comp.name "[(8~{R},9~{S},13~{S},14~{S})-13-methyl-17-oxidanylidene-7,8,9,11,12,14,15,16-octahydro-6~{H}-cyclopenta[a]phenanthren-3-yl] sulfamate" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C18 H23 N O4 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-03-29 _chem_comp.pdbx_modified_date 2024-04-05 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 349.445 _chem_comp.one_letter_code ? _chem_comp.three_letter_code VRN _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8OKT _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal VRN C13 C1 C 0 1 N N S N N N -1.638 8.968 12.555 -4.090 0.544 -0.117 C13 VRN 1 VRN C14 C2 C 0 1 N N S N N N -2.723 8.987 13.618 -3.445 -0.727 0.504 C14 VRN 2 VRN C15 C3 C 0 1 N N N N N N -3.459 10.307 13.424 -4.408 -1.815 0.012 C15 VRN 3 VRN C16 C4 C 0 1 N N N N N N -2.328 11.308 13.165 -5.796 -1.138 0.181 C16 VRN 4 VRN C17 C5 C 0 1 N N N N N N -1.206 10.424 12.701 -5.553 0.367 0.157 C17 VRN 5 VRN O17 O1 O 0 1 N N N N N N -0.083 10.832 12.460 -6.372 1.239 0.326 O17 VRN 6 VRN C18 C6 C 0 1 N N N N N N -2.129 8.760 11.119 -3.853 0.528 -1.629 C18 VRN 7 VRN C12 C7 C 0 1 N N N N N N -0.608 7.909 12.933 -3.413 1.757 0.483 C12 VRN 8 VRN C11 C8 C 0 1 N N N N N N -1.325 6.559 13.140 -1.932 1.723 0.061 C11 VRN 9 VRN C8 C9 C 0 1 N N R N N N -3.491 7.669 13.695 -2.034 -0.799 -0.043 C8 VRN 10 VRN C9 C10 C 0 1 N N S N N N -2.481 6.630 14.166 -1.278 0.421 0.500 C9 VRN 11 VRN C10 C11 C 0 1 Y N N N N N -3.175 5.295 14.430 0.165 0.356 0.092 C10 VRN 12 VRN C1 C12 C 0 1 Y N N N N N -2.390 4.157 14.559 0.901 1.533 0.088 C1 VRN 13 VRN C2 C13 C 0 1 Y N N N N N -2.945 2.912 14.789 2.232 1.528 -0.273 C2 VRN 14 VRN C7 C14 C 0 1 N N N N N N -4.660 7.686 14.655 -1.303 -2.053 0.436 C7 VRN 15 VRN C6 C15 C 0 1 N N N N N N -5.453 6.379 14.497 0.028 -2.144 -0.309 C6 VRN 16 VRN C5 C16 C 0 1 Y N N N N N -4.570 5.161 14.565 0.766 -0.832 -0.273 C5 VRN 17 VRN C4 C17 C 0 1 Y N N N N N -5.153 3.894 14.816 2.107 -0.838 -0.632 C4 VRN 18 VRN C3 C18 C 0 1 Y N N N N N -4.310 2.765 14.901 2.841 0.336 -0.634 C3 VRN 19 VRN O21 O2 O 0 1 N N N N N N -4.757 1.463 15.135 4.153 0.319 -0.988 O21 VRN 20 VRN S22 S1 S 0 1 N N N N N N -5.345 1.000 16.522 5.106 0.092 0.176 S22 VRN 21 VRN O3 O3 O 0 1 N N N N N N -6.689 1.476 16.481 6.417 0.303 -0.331 O3 VRN 22 VRN O20 O4 O 0 1 N N N N N N -4.529 1.531 17.579 4.573 0.813 1.278 O20 VRN 23 VRN N19 N1 N 0 1 N N N N N N -5.255 -0.551 16.433 5.014 -1.512 0.579 N19 VRN 24 VRN H1 H1 H 0 1 N N N N N N -2.196 9.079 14.579 -3.436 -0.668 1.592 H1 VRN 25 VRN H2 H2 H 0 1 N N N N N N -4.026 10.578 14.327 -4.219 -2.055 -1.034 H2 VRN 26 VRN H3 H3 H 0 1 N N N N N N -4.143 10.254 12.564 -4.332 -2.708 0.632 H3 VRN 27 VRN H4 H4 H 0 1 N N N N N N -2.055 11.845 14.085 -6.453 -1.423 -0.642 H4 VRN 28 VRN H5 H5 H 0 1 N N N N N N -2.610 12.033 12.387 -6.241 -1.431 1.132 H5 VRN 29 VRN H6 H6 H 0 1 N N N N N N -2.447 7.715 10.987 -4.391 1.356 -2.090 H6 VRN 30 VRN H7 H7 H 0 1 N N N N N N -2.979 9.430 10.922 -2.787 0.630 -1.831 H7 VRN 31 VRN H8 H8 H 0 1 N N N N N N -1.313 8.986 10.416 -4.213 -0.414 -2.043 H8 VRN 32 VRN H9 H9 H 0 1 N N N N N N 0.134 7.812 12.127 -3.884 2.666 0.108 H9 VRN 33 VRN H10 H10 H 0 1 N N N N N N -0.101 8.204 13.864 -3.489 1.722 1.570 H10 VRN 34 VRN H11 H11 H 0 1 N N N N N N -1.736 6.230 12.174 -1.866 1.810 -1.024 H11 VRN 35 VRN H12 H12 H 0 1 N N N N N N -0.588 5.823 13.495 -1.408 2.561 0.521 H12 VRN 36 VRN H13 H13 H 0 1 N N N N N N -3.847 7.399 12.690 -2.058 -0.762 -1.132 H13 VRN 37 VRN H14 H14 H 0 1 N N N N N N -2.057 6.981 15.118 -1.310 0.379 1.589 H14 VRN 38 VRN H15 H15 H 0 1 N N N N N N -1.317 4.247 14.477 0.426 2.461 0.370 H15 VRN 39 VRN H16 H16 H 0 1 N N N N N N -2.304 2.048 14.882 2.797 2.449 -0.274 H16 VRN 40 VRN H17 H17 H 0 1 N N N N N N -4.289 7.770 15.687 -1.121 -1.986 1.508 H17 VRN 41 VRN H18 H18 H 0 1 N N N N N N -5.311 8.543 14.428 -1.907 -2.935 0.221 H18 VRN 42 VRN H19 H19 H 0 1 N N N N N N -5.964 6.391 13.523 0.645 -2.913 0.156 H19 VRN 43 VRN H20 H20 H 0 1 N N N N N N -6.200 6.319 15.302 -0.162 -2.419 -1.347 H20 VRN 44 VRN H21 H21 H 0 1 N N N N N N -6.221 3.794 14.940 2.581 -1.767 -0.913 H21 VRN 45 VRN H22 H22 H 0 1 N N N N N N -5.609 -0.955 17.277 5.786 -1.963 0.955 H22 VRN 46 VRN H23 H23 H 0 1 N N N N N N -5.798 -0.872 15.657 4.188 -2.000 0.439 H23 VRN 47 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal VRN C18 C13 SING N N 1 VRN O17 C17 DOUB N N 2 VRN C13 C17 SING N N 3 VRN C13 C12 SING N N 4 VRN C13 C14 SING N N 5 VRN C17 C16 SING N N 6 VRN C12 C11 SING N N 7 VRN C11 C9 SING N N 8 VRN C16 C15 SING N N 9 VRN C15 C14 SING N N 10 VRN C14 C8 SING N N 11 VRN C8 C9 SING N N 12 VRN C8 C7 SING N N 13 VRN C9 C10 SING N N 14 VRN C10 C1 DOUB Y N 15 VRN C10 C5 SING Y N 16 VRN C6 C5 SING N N 17 VRN C6 C7 SING N N 18 VRN C1 C2 SING Y N 19 VRN C5 C4 DOUB Y N 20 VRN C2 C3 DOUB Y N 21 VRN C4 C3 SING Y N 22 VRN C3 O21 SING N N 23 VRN O21 S22 SING N N 24 VRN N19 S22 SING N N 25 VRN O3 S22 DOUB N N 26 VRN S22 O20 DOUB N N 27 VRN C14 H1 SING N N 28 VRN C15 H2 SING N N 29 VRN C15 H3 SING N N 30 VRN C16 H4 SING N N 31 VRN C16 H5 SING N N 32 VRN C18 H6 SING N N 33 VRN C18 H7 SING N N 34 VRN C18 H8 SING N N 35 VRN C12 H9 SING N N 36 VRN C12 H10 SING N N 37 VRN C11 H11 SING N N 38 VRN C11 H12 SING N N 39 VRN C8 H13 SING N N 40 VRN C9 H14 SING N N 41 VRN C1 H15 SING N N 42 VRN C2 H16 SING N N 43 VRN C7 H17 SING N N 44 VRN C7 H18 SING N N 45 VRN C6 H19 SING N N 46 VRN C6 H20 SING N N 47 VRN C4 H21 SING N N 48 VRN N19 H22 SING N N 49 VRN N19 H23 SING N N 50 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor VRN InChI InChI 1.06 "InChI=1S/C18H23NO4S/c1-18-9-8-14-13-5-3-12(23-24(19,21)22)10-11(13)2-4-15(14)16(18)6-7-17(18)20/h3,5,10,14-16H,2,4,6-9H2,1H3,(H2,19,21,22)/t14-,15-,16+,18+/m1/s1" VRN InChIKey InChI 1.06 RVKFQAJIXCZXQY-CBZIJGRNSA-N VRN SMILES_CANONICAL CACTVS 3.385 "C[C@]12CC[C@H]3[C@@H](CCc4cc(O[S](N)(=O)=O)ccc34)[C@@H]1CCC2=O" VRN SMILES CACTVS 3.385 "C[C]12CC[CH]3[CH](CCc4cc(O[S](N)(=O)=O)ccc34)[CH]1CCC2=O" VRN SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C[C@]12CC[C@@H]3c4ccc(cc4CC[C@H]3[C@@H]1CCC2=O)OS(=O)(=O)N" VRN SMILES "OpenEye OEToolkits" 2.0.7 "CC12CCC3c4ccc(cc4CCC3C1CCC2=O)OS(=O)(=O)N" # _pdbx_chem_comp_identifier.comp_id VRN _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "[(8~{R},9~{S},13~{S},14~{S})-13-methyl-17-oxidanylidene-7,8,9,11,12,14,15,16-octahydro-6~{H}-cyclopenta[a]phenanthren-3-yl] sulfamate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site VRN "Create component" 2023-03-29 PDBE VRN "Initial release" 2024-04-10 RCSB #