data_VRP # _chem_comp.id VRP _chem_comp.name Myriocin _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C21 H39 N O6" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "(2S,3R,4R,6E)-2-amino-3,4-dihydroxy-2-(hydroxymethyl)-14-oxoicos-6-enoic acid" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2020-09-11 _chem_comp.pdbx_modified_date 2021-03-13 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 401.537 _chem_comp.one_letter_code ? _chem_comp.three_letter_code VRP _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7K0Q _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal VRP C10 C1 C 0 1 N N N 192.394 182.180 192.120 3.846 1.002 -0.109 C10 VRP 1 VRP C11 C2 C 0 1 N N N 191.276 181.701 193.077 2.438 0.741 -0.647 C11 VRP 2 VRP C12 C3 C 0 1 N N N 191.554 181.953 194.574 1.475 1.790 -0.087 C12 VRP 3 VRP C13 C4 C 0 1 N N N 192.656 182.991 194.864 0.067 1.528 -0.624 C13 VRP 4 VRP C14 C5 C 0 1 N N N 193.206 182.953 196.299 -0.896 2.577 -0.064 C14 VRP 5 VRP C01 C6 C 0 1 N N N 194.660 181.932 182.209 13.517 -1.083 0.651 C01 VRP 6 VRP C02 C7 C 0 1 N N N 193.684 181.515 183.295 12.228 -1.560 -0.021 C02 VRP 7 VRP C03 C8 C 0 1 N N N 194.157 181.940 184.679 11.071 -0.647 0.390 C03 VRP 8 VRP C04 C9 C 0 1 N N N 193.121 181.685 185.774 9.782 -1.124 -0.282 C04 VRP 9 VRP C05 C10 C 0 1 N N N 193.686 181.966 187.174 8.625 -0.212 0.128 C05 VRP 10 VRP C06 C11 C 0 1 N N N 192.683 182.591 188.152 7.336 -0.689 -0.544 C06 VRP 11 VRP C07 C12 C 0 1 N N N 193.032 182.410 189.622 6.196 0.211 -0.140 C07 VRP 12 VRP C09 C13 C 0 1 N N N 191.934 182.436 190.672 4.809 -0.047 -0.669 C09 VRP 13 VRP C15 C14 C 0 1 N N N 194.222 184.009 196.625 -2.283 2.320 -0.594 C15 VRP 14 VRP C16 C15 C 0 1 N N N 195.087 183.914 197.640 -3.284 2.170 0.238 C16 VRP 15 VRP C17 C16 C 0 1 N N N 196.107 184.946 197.999 -4.671 1.913 -0.292 C17 VRP 16 VRP C18 C17 C 0 1 N N R 196.989 184.536 199.208 -5.229 0.635 0.338 C18 VRP 17 VRP C19 C18 C 0 1 N N R 196.216 184.656 200.579 -6.584 0.305 -0.292 C19 VRP 18 VRP C20 C19 C 0 1 N N S 196.963 184.086 201.831 -7.106 -1.013 0.283 C20 VRP 19 VRP C21 C20 C 0 1 N N N 196.178 182.891 202.403 -8.413 -1.393 -0.416 C21 VRP 20 VRP C23 C21 C 0 1 N N N 198.403 183.543 201.464 -6.084 -2.098 0.062 C23 VRP 21 VRP N26 N1 N 0 1 N N N 197.015 185.154 202.838 -7.349 -0.857 1.724 N26 VRP 22 VRP O08 O1 O 0 1 N N N 194.191 182.241 189.951 6.394 1.137 0.609 O08 VRP 23 VRP O22 O2 O 0 1 N N N 194.862 183.324 202.520 -8.158 -1.638 -1.801 O22 VRP 24 VRP O24 O3 O 0 1 N N N 198.455 182.395 200.982 -5.290 -2.004 -0.844 O24 VRP 25 VRP O25 O4 O 0 1 N N N 199.366 184.302 201.684 -6.056 -3.169 0.870 O25 VRP 26 VRP O27 O5 O 0 1 N N N 195.977 186.014 200.713 -7.511 1.352 -0.001 O27 VRP 27 VRP O28 O6 O 0 1 N N N 198.057 185.421 199.145 -5.391 0.828 1.744 O28 VRP 28 VRP H1 H1 H 0 1 N N N 193.180 181.411 192.099 4.173 1.996 -0.415 H1 VRP 29 VRP H2 H2 H 0 1 N N N 192.809 183.118 192.519 3.837 0.942 0.979 H2 VRP 30 VRP H3 H3 H 0 1 N N N 190.347 182.226 192.808 2.448 0.801 -1.735 H3 VRP 31 VRP H4 H4 H 0 1 N N N 191.141 180.619 192.931 2.111 -0.253 -0.341 H4 VRP 32 VRP H5 H5 H 0 1 N N N 190.622 182.305 195.040 1.466 1.729 1.002 H5 VRP 33 VRP H6 H6 H 0 1 N N N 191.855 180.999 195.031 1.802 2.783 -0.393 H6 VRP 34 VRP H7 H7 H 0 1 N N N 193.491 182.809 194.171 0.077 1.589 -1.713 H7 VRP 35 VRP H8 H8 H 0 1 N N N 192.241 183.993 194.682 -0.260 0.535 -0.318 H8 VRP 36 VRP H9 H9 H 0 1 N N N 192.359 183.071 196.991 -0.905 2.517 1.024 H9 VRP 37 VRP H10 H10 H 0 1 N N N 193.674 181.970 196.457 -0.569 3.571 -0.370 H10 VRP 38 VRP H11 H11 H 0 1 N N N 194.280 181.606 181.229 13.733 -0.061 0.340 H11 VRP 39 VRP H12 H12 H 0 1 N N N 194.769 183.027 182.214 13.396 -1.115 1.734 H12 VRP 40 VRP H13 H13 H 0 1 N N N 195.638 181.465 182.397 14.342 -1.733 0.359 H13 VRP 41 VRP H14 H14 H 0 1 N N N 192.708 181.981 183.094 12.350 -1.528 -1.104 H14 VRP 42 VRP H15 H15 H 0 1 N N N 193.578 180.420 183.276 12.013 -2.582 0.291 H15 VRP 43 VRP H16 H16 H 0 1 N N N 195.070 181.378 184.924 10.950 -0.679 1.472 H16 VRP 44 VRP H17 H17 H 0 1 N N N 194.384 183.016 184.656 11.286 0.375 0.078 H17 VRP 45 VRP H18 H18 H 0 1 N N N 192.254 182.340 185.603 9.904 -1.092 -1.365 H18 VRP 46 VRP H19 H19 H 0 1 N N N 192.802 180.633 185.724 9.567 -2.146 0.029 H19 VRP 47 VRP H20 H20 H 0 1 N N N 194.035 181.014 187.601 8.503 -0.243 1.211 H20 VRP 48 VRP H21 H21 H 0 1 N N N 194.538 182.654 187.069 8.840 0.811 -0.184 H21 VRP 49 VRP H22 H22 H 0 1 N N N 192.627 183.670 187.943 7.457 -0.657 -1.627 H22 VRP 50 VRP H23 H23 H 0 1 N N N 191.699 182.132 187.974 7.121 -1.711 -0.233 H23 VRP 51 VRP H24 H24 H 0 1 N N N 191.456 183.426 190.638 4.482 -1.041 -0.363 H24 VRP 52 VRP H25 H25 H 0 1 N N N 191.196 181.664 190.409 4.819 0.013 -1.758 H25 VRP 53 VRP H26 H26 H 0 1 N N N 194.256 184.893 196.006 -2.451 2.259 -1.659 H26 VRP 54 VRP H27 H27 H 0 1 N N N 195.046 183.022 198.248 -3.115 2.231 1.303 H27 VRP 55 VRP H28 H28 H 0 1 N N N 196.760 185.110 197.129 -5.318 2.753 -0.041 H28 VRP 56 VRP H29 H29 H 0 1 N N N 195.585 185.882 198.248 -4.631 1.797 -1.375 H29 VRP 57 VRP H30 H30 H 0 1 N N N 197.320 183.495 199.077 -4.536 -0.189 0.161 H30 VRP 58 VRP H31 H31 H 0 1 N N N 195.266 184.111 200.476 -6.470 0.210 -1.372 H31 VRP 59 VRP H32 H32 H 0 1 N N N 196.239 182.031 201.720 -8.823 -2.292 0.043 H32 VRP 60 VRP H33 H33 H 0 1 N N N 196.577 182.607 203.388 -9.128 -0.576 -0.318 H33 VRP 61 VRP H34 H34 H 0 1 N N N 197.488 184.821 203.654 -7.850 -1.650 2.094 H34 VRP 62 VRP H35 H35 H 0 1 N N N 197.508 185.940 202.465 -6.485 -0.709 2.223 H35 VRP 63 VRP H37 H37 H 0 1 N N N 194.327 182.622 202.871 -8.944 -1.885 -2.307 H37 VRP 64 VRP H38 H38 H 0 1 N N N 200.173 183.873 201.426 -5.383 -3.839 0.689 H38 VRP 65 VRP H39 H39 H 0 1 N N N 195.509 186.175 201.524 -7.735 1.431 0.937 H39 VRP 66 VRP H40 H40 H 0 1 N N N 198.659 185.243 199.858 -5.995 1.546 1.975 H40 VRP 67 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal VRP C01 C02 SING N N 1 VRP C02 C03 SING N N 2 VRP C03 C04 SING N N 3 VRP C04 C05 SING N N 4 VRP C05 C06 SING N N 5 VRP C06 C07 SING N N 6 VRP C07 O08 DOUB N N 7 VRP C07 C09 SING N N 8 VRP C09 C10 SING N N 9 VRP C10 C11 SING N N 10 VRP C11 C12 SING N N 11 VRP C12 C13 SING N N 12 VRP C13 C14 SING N N 13 VRP C14 C15 SING N N 14 VRP C15 C16 DOUB N E 15 VRP C16 C17 SING N N 16 VRP C17 C18 SING N N 17 VRP O28 C18 SING N N 18 VRP C18 C19 SING N N 19 VRP C19 O27 SING N N 20 VRP C19 C20 SING N N 21 VRP O24 C23 DOUB N N 22 VRP C23 O25 SING N N 23 VRP C23 C20 SING N N 24 VRP C20 C21 SING N N 25 VRP C20 N26 SING N N 26 VRP C21 O22 SING N N 27 VRP C10 H1 SING N N 28 VRP C10 H2 SING N N 29 VRP C11 H3 SING N N 30 VRP C11 H4 SING N N 31 VRP C12 H5 SING N N 32 VRP C12 H6 SING N N 33 VRP C13 H7 SING N N 34 VRP C13 H8 SING N N 35 VRP C14 H9 SING N N 36 VRP C14 H10 SING N N 37 VRP C01 H11 SING N N 38 VRP C01 H12 SING N N 39 VRP C01 H13 SING N N 40 VRP C02 H14 SING N N 41 VRP C02 H15 SING N N 42 VRP C03 H16 SING N N 43 VRP C03 H17 SING N N 44 VRP C04 H18 SING N N 45 VRP C04 H19 SING N N 46 VRP C05 H20 SING N N 47 VRP C05 H21 SING N N 48 VRP C06 H22 SING N N 49 VRP C06 H23 SING N N 50 VRP C09 H24 SING N N 51 VRP C09 H25 SING N N 52 VRP C15 H26 SING N N 53 VRP C16 H27 SING N N 54 VRP C17 H28 SING N N 55 VRP C17 H29 SING N N 56 VRP C18 H30 SING N N 57 VRP C19 H31 SING N N 58 VRP C21 H32 SING N N 59 VRP C21 H33 SING N N 60 VRP N26 H34 SING N N 61 VRP N26 H35 SING N N 62 VRP O22 H37 SING N N 63 VRP O25 H38 SING N N 64 VRP O27 H39 SING N N 65 VRP O28 H40 SING N N 66 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor VRP SMILES ACDLabs 12.01 "C(CCCC\C=C\CC(C(O)C(CO)(N)C(O)=O)O)CC(CCCCCC)=O" VRP InChI InChI 1.03 "InChI=1S/C21H39NO6/c1-2-3-4-10-13-17(24)14-11-8-6-5-7-9-12-15-18(25)19(26)21(22,16-23)20(27)28/h9,12,18-19,23,25-26H,2-8,10-11,13-16,22H2,1H3,(H,27,28)/b12-9+/t18-,19+,21+/m1/s1" VRP InChIKey InChI 1.03 ZZIKIHCNFWXKDY-GNTQXERDSA-N VRP SMILES_CANONICAL CACTVS 3.385 "CCCCCCC(=O)CCCCCC\C=C\C[C@@H](O)[C@H](O)[C@@](N)(CO)C(O)=O" VRP SMILES CACTVS 3.385 "CCCCCCC(=O)CCCCCCC=CC[CH](O)[CH](O)[C](N)(CO)C(O)=O" VRP SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CCCCCCC(=O)CCCCCC/C=C/C[C@H]([C@@H]([C@@](CO)(C(=O)O)N)O)O" VRP SMILES "OpenEye OEToolkits" 2.0.7 "CCCCCCC(=O)CCCCCCC=CCC(C(C(CO)(C(=O)O)N)O)O" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier VRP "SYSTEMATIC NAME" ACDLabs 12.01 "(2S,3R,4R,6E)-2-amino-3,4-dihydroxy-2-(hydroxymethyl)-14-oxoicos-6-enoic acid" VRP "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(~{E},2~{S},3~{R},4~{R})-2-azanyl-2-(hydroxymethyl)-3,4-bis(oxidanyl)-14-oxidanylidene-icos-6-enoic acid" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site VRP "Create component" 2020-09-11 RCSB VRP "Initial release" 2021-02-24 RCSB VRP "Modify synonyms" 2021-03-13 RCSB # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id VRP _pdbx_chem_comp_synonyms.name "(2S,3R,4R,6E)-2-amino-3,4-dihydroxy-2-(hydroxymethyl)-14-oxoicos-6-enoic acid" _pdbx_chem_comp_synonyms.provenance PDB _pdbx_chem_comp_synonyms.type ? ##