data_VRU # _chem_comp.id VRU _chem_comp.name "~{N}-ethyl-4-[5-[1-(2-hydroxyethyl)pyrazol-4-yl]benzimidazol-1-yl]-2,6-dimethoxy-benzamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C23 H25 N5 O4" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-03-29 _chem_comp.pdbx_modified_date 2024-01-05 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 435.476 _chem_comp.one_letter_code ? _chem_comp.three_letter_code VRU _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8OKU _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal VRU N N1 N 0 1 N N N N N N -62.801 0.547 -21.383 -5.836 -1.773 0.757 N VRU 1 VRU C C1 C 0 1 N N N N N N -62.693 2.159 -19.648 -7.139 -3.428 2.001 C VRU 2 VRU O O1 O 0 1 N N N N N N -61.975 0.912 -23.545 -6.464 -0.604 -1.024 O VRU 3 VRU C1 C2 C 0 1 N N N N N N -61.874 1.390 -20.674 -7.131 -2.455 0.820 C1 VRU 4 VRU C10 C3 C 0 1 N N N N N N -64.015 1.562 -25.782 -2.320 -2.381 -2.446 C10 VRU 5 VRU C11 C4 C 0 1 Y N N N N N -67.047 -3.060 -26.400 -0.404 3.088 -0.734 C11 VRU 6 VRU C12 C5 C 0 1 Y N N N N N -68.308 -4.523 -25.373 1.568 2.232 -0.405 C12 VRU 7 VRU C13 C6 C 0 1 Y N N N N N -69.259 -5.507 -24.987 2.928 1.962 -0.247 C13 VRU 8 VRU C14 C7 C 0 1 Y N N N N N -69.313 -5.904 -23.684 3.340 0.679 0.084 C14 VRU 9 VRU C15 C8 C 0 1 Y N N N N N -68.481 -5.367 -22.727 2.399 -0.339 0.258 C15 VRU 10 VRU C16 C9 C 0 1 Y N N N N N -67.560 -4.405 -23.105 1.056 -0.079 0.104 C16 VRU 11 VRU C17 C10 C 0 1 Y N N N N N -67.484 -3.981 -24.454 0.631 1.200 -0.227 C17 VRU 12 VRU C18 C11 C 0 1 Y N N N N N -70.316 -6.930 -23.268 4.786 0.387 0.253 C18 VRU 13 VRU C19 C12 C 0 1 Y N N N N N -70.525 -7.319 -21.953 5.843 1.307 0.110 C19 VRU 14 VRU C2 C13 C 0 1 N N N N N N -62.768 0.375 -22.831 -5.601 -0.860 -0.206 C2 VRU 15 VRU C20 C14 C 0 1 N N N N N N -72.918 -9.271 -23.652 7.647 -1.705 0.953 C20 VRU 16 VRU C21 C15 C 0 1 N N N N N N -72.451 -10.579 -23.010 8.680 -1.797 -0.172 C21 VRU 17 VRU C22 C16 C 0 1 Y N N N N N -71.194 -7.574 -24.083 5.332 -0.819 0.581 C22 VRU 18 VRU C3 C17 C 0 1 Y N N N N N -63.809 -0.552 -23.437 -4.302 -0.175 -0.269 C3 VRU 19 VRU C4 C18 C 0 1 Y N N N N N -63.790 -1.902 -23.110 -4.104 1.029 0.426 C4 VRU 20 VRU C5 C19 C 0 1 N N N N N N -62.505 -3.729 -22.338 -4.841 2.792 1.837 C5 VRU 21 VRU C6 C20 C 0 1 Y N N N N N -64.726 -2.754 -23.654 -2.879 1.667 0.362 C6 VRU 22 VRU C7 C21 C 0 1 Y N N N N N -65.681 -2.242 -24.522 -1.845 1.120 -0.387 C7 VRU 23 VRU C8 C22 C 0 1 Y N N N N N -65.697 -0.884 -24.850 -2.032 -0.072 -1.078 C8 VRU 24 VRU C9 C23 C 0 1 Y N N N N N -64.764 -0.045 -24.287 -3.250 -0.725 -1.019 C9 VRU 25 VRU N1 N2 N 0 1 Y N N N N N -66.702 -3.086 -25.109 -0.610 1.771 -0.448 N1 VRU 26 VRU N2 N3 N 0 1 Y N N N N N -68.014 -3.952 -26.572 0.868 3.356 -0.710 N2 VRU 27 VRU N3 N4 N 0 1 Y N N N N N -71.500 -8.210 -21.963 6.964 0.676 0.336 N3 VRU 28 VRU N4 N5 N 0 1 Y N N N N N -71.886 -8.340 -23.271 6.670 -0.660 0.634 N4 VRU 29 VRU O1 O2 O 0 1 N N N N N N -62.826 -2.379 -22.222 -5.114 1.565 1.157 O1 VRU 30 VRU O2 O3 O 0 1 N N N N N N -64.750 1.294 -24.611 -3.431 -1.888 -1.694 O2 VRU 31 VRU O3 O4 O 0 1 N N N N N N -72.787 -10.574 -21.636 9.633 -2.816 0.139 O3 VRU 32 VRU H1 H1 H 0 1 N N N N N N -63.498 0.058 -20.859 -5.150 -1.975 1.412 H1 VRU 33 VRU H2 H2 H 0 1 N N N N N N -62.031 2.824 -19.073 -8.102 -3.935 2.047 H2 VRU 34 VRU H3 H3 H 0 1 N N N N N N -63.457 2.759 -20.164 -6.346 -4.164 1.871 H3 VRU 35 VRU H4 H4 H 0 1 N N N N N N -63.184 1.450 -18.965 -6.974 -2.876 2.927 H4 VRU 36 VRU H5 H5 H 0 1 N N N N N N -61.111 0.778 -20.171 -7.924 -1.719 0.950 H5 VRU 37 VRU H6 H6 H 0 1 N N N N N N -61.384 2.087 -21.370 -7.296 -3.007 -0.106 H6 VRU 38 VRU H7 H7 H 0 1 N N N N N N -64.038 2.642 -25.991 -2.037 -1.647 -3.199 H7 VRU 39 VRU H8 H8 H 0 1 N N N N N N -62.973 1.238 -25.643 -1.478 -2.559 -1.777 H8 VRU 40 VRU H9 H9 H 0 1 N N N N N N -64.459 1.015 -26.627 -2.599 -3.315 -2.935 H9 VRU 41 VRU H10 H10 H 0 1 N N N N N N -66.617 -2.428 -27.163 -1.183 3.803 -0.955 H10 VRU 42 VRU H11 H11 H 0 1 N N N N N N -69.930 -5.935 -25.717 3.657 2.748 -0.383 H11 VRU 43 VRU H12 H12 H 0 1 N N N N N N -68.546 -5.691 -21.699 2.728 -1.335 0.515 H12 VRU 44 VRU H13 H13 H 0 1 N N N N N N -66.897 -3.976 -22.368 0.334 -0.870 0.241 H13 VRU 45 VRU H14 H14 H 0 1 N N N N N N -69.991 -6.961 -21.085 5.744 2.352 -0.144 H14 VRU 46 VRU H15 H15 H 0 1 N N N N N N -73.896 -8.962 -23.255 7.135 -2.661 1.056 H15 VRU 47 VRU H16 H16 H 0 1 N N N N N N -72.980 -9.367 -24.746 8.150 -1.459 1.888 H16 VRU 48 VRU H17 H17 H 0 1 N N N N N N -72.945 -11.428 -23.506 8.177 -2.043 -1.107 H17 VRU 49 VRU H18 H18 H 0 1 N N N N N N -71.361 -10.673 -23.121 9.192 -0.840 -0.275 H18 VRU 50 VRU H19 H19 H 0 1 N N N N N N -71.298 -7.478 -25.154 4.791 -1.735 0.762 H19 VRU 51 VRU H20 H20 H 0 1 N N N N N N -61.740 -3.990 -21.592 -5.729 3.110 2.383 H20 VRU 52 VRU H21 H21 H 0 1 N N N N N N -63.406 -4.336 -22.166 -4.018 2.644 2.537 H21 VRU 53 VRU H22 H22 H 0 1 N N N N N N -62.116 -3.928 -23.347 -4.567 3.557 1.111 H22 VRU 54 VRU H23 H23 H 0 1 N N N N N N -64.717 -3.806 -23.409 -2.726 2.593 0.896 H23 VRU 55 VRU H24 H24 H 0 1 N N N N N N -66.434 -0.497 -25.538 -1.224 -0.491 -1.659 H24 VRU 56 VRU H25 H25 H 0 1 N N N N N N -72.498 -11.386 -21.236 10.319 -2.930 -0.533 H25 VRU 57 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal VRU N2 C11 DOUB Y N 1 VRU N2 C12 SING Y N 2 VRU C11 N1 SING Y N 3 VRU C10 O2 SING N N 4 VRU C12 C13 DOUB Y N 5 VRU C12 C17 SING Y N 6 VRU N1 C7 SING N N 7 VRU N1 C17 SING Y N 8 VRU C13 C14 SING Y N 9 VRU C8 C7 DOUB Y N 10 VRU C8 C9 SING Y N 11 VRU O2 C9 SING N N 12 VRU C7 C6 SING Y N 13 VRU C17 C16 DOUB Y N 14 VRU C9 C3 DOUB Y N 15 VRU C22 N4 SING Y N 16 VRU C22 C18 DOUB Y N 17 VRU C14 C18 SING N N 18 VRU C14 C15 DOUB Y N 19 VRU C6 C4 DOUB Y N 20 VRU C20 N4 SING N N 21 VRU C20 C21 SING N N 22 VRU O C2 DOUB N N 23 VRU C3 C4 SING Y N 24 VRU C3 C2 SING N N 25 VRU N4 N3 SING Y N 26 VRU C18 C19 SING Y N 27 VRU C4 O1 SING N N 28 VRU C16 C15 SING Y N 29 VRU C21 O3 SING N N 30 VRU C2 N SING N N 31 VRU C5 O1 SING N N 32 VRU N3 C19 DOUB Y N 33 VRU N C1 SING N N 34 VRU C1 C SING N N 35 VRU N H1 SING N N 36 VRU C H2 SING N N 37 VRU C H3 SING N N 38 VRU C H4 SING N N 39 VRU C1 H5 SING N N 40 VRU C1 H6 SING N N 41 VRU C10 H7 SING N N 42 VRU C10 H8 SING N N 43 VRU C10 H9 SING N N 44 VRU C11 H10 SING N N 45 VRU C13 H11 SING N N 46 VRU C15 H12 SING N N 47 VRU C16 H13 SING N N 48 VRU C19 H14 SING N N 49 VRU C20 H15 SING N N 50 VRU C20 H16 SING N N 51 VRU C21 H17 SING N N 52 VRU C21 H18 SING N N 53 VRU C22 H19 SING N N 54 VRU C5 H20 SING N N 55 VRU C5 H21 SING N N 56 VRU C5 H22 SING N N 57 VRU C6 H23 SING N N 58 VRU C8 H24 SING N N 59 VRU O3 H25 SING N N 60 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor VRU InChI InChI 1.06 "InChI=1S/C23H25N5O4/c1-4-24-23(30)22-20(31-2)10-17(11-21(22)32-3)28-14-25-18-9-15(5-6-19(18)28)16-12-26-27(13-16)7-8-29/h5-6,9-14,29H,4,7-8H2,1-3H3,(H,24,30)" VRU InChIKey InChI 1.06 FCJGMZMSVIAAJU-UHFFFAOYSA-N VRU SMILES_CANONICAL CACTVS 3.385 "CCNC(=O)c1c(OC)cc(cc1OC)n2cnc3cc(ccc23)c4cnn(CCO)c4" VRU SMILES CACTVS 3.385 "CCNC(=O)c1c(OC)cc(cc1OC)n2cnc3cc(ccc23)c4cnn(CCO)c4" VRU SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CCNC(=O)c1c(cc(cc1OC)n2cnc3c2ccc(c3)c4cnn(c4)CCO)OC" VRU SMILES "OpenEye OEToolkits" 2.0.7 "CCNC(=O)c1c(cc(cc1OC)n2cnc3c2ccc(c3)c4cnn(c4)CCO)OC" # _pdbx_chem_comp_identifier.comp_id VRU _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "~{N}-ethyl-4-[5-[1-(2-hydroxyethyl)pyrazol-4-yl]benzimidazol-1-yl]-2,6-dimethoxy-benzamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site VRU "Create component" 2023-03-29 PDBE VRU "Initial release" 2024-01-10 RCSB #