data_VRZ # _chem_comp.id VRZ _chem_comp.name "1-[4-(4-amino-7-cyclopentyl-7H-pyrrolo[2,3-d]pyrimidin-5-yl)phenyl]-3-benzylurea" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C25 H26 N6 O" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2012-05-28 _chem_comp.pdbx_modified_date 2013-04-26 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 426.514 _chem_comp.one_letter_code ? _chem_comp.three_letter_code VRZ _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 3VRZ _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal VRZ CAP CAP C 0 1 N N N 8.438 -1.070 -7.524 -5.859 -2.367 1.235 CAP LIG 1 VRZ CAN CAN C 0 1 N N N 9.794 -1.070 -8.232 -6.523 -3.641 0.684 CAN LIG 2 VRZ CAO CAO C 0 1 N N N 9.671 -1.958 -9.465 -7.102 -3.274 -0.697 CAO LIG 3 VRZ CAQ CAQ C 0 1 N N N 8.198 -2.324 -9.603 -6.260 -2.056 -1.151 CAQ LIG 4 VRZ CBE CBE C 0 1 N N N 7.494 -1.989 -8.292 -6.057 -1.270 0.169 CBE LIG 5 VRZ NBF NBF N 0 1 Y N N 6.231 -1.291 -8.628 -4.868 -0.418 0.081 NBF LIG 6 VRZ CAM CAM C 0 1 Y N N 6.182 -0.066 -9.164 -3.596 -0.871 -0.147 CAM LIG 7 VRZ C4 C4 C 0 1 Y N N 4.974 -1.754 -8.462 -4.870 0.944 0.208 C4 LIG 8 VRZ N3 N3 N 0 1 Y N N 4.498 -2.931 -7.970 -5.820 1.854 0.427 N3 LIG 9 VRZ C2 C2 C 0 1 Y N N 3.176 -3.166 -7.919 -5.521 3.132 0.504 C2 LIG 10 VRZ N1 N1 N 0 1 Y N N 2.293 -2.251 -8.348 -4.287 3.586 0.371 N1 LIG 11 VRZ C6 C6 C 0 1 Y N N 2.709 -1.063 -8.849 -3.272 2.755 0.150 C6 LIG 12 VRZ NAA NAA N 0 1 N N N 1.778 -0.170 -9.270 -1.982 3.233 0.012 NAA LIG 13 VRZ C5 C5 C 0 1 Y N N 4.074 -0.788 -8.921 -3.543 1.383 0.061 C5 LIG 14 VRZ CBB CBB C 0 1 Y N N 4.851 0.287 -9.360 -2.738 0.177 -0.175 CBB LIG 15 VRZ CAZ CAZ C 0 1 Y N N 4.511 1.624 -9.932 -1.273 0.119 -0.394 CAZ LIG 16 VRZ CAK CAK C 0 1 Y N N 5.277 2.067 -10.994 -0.674 0.952 -1.338 CAK LIG 17 VRZ CAI CAI C 0 1 Y N N 5.063 3.313 -11.561 0.690 0.900 -1.536 CAI LIG 18 VRZ CAJ CAJ C 0 1 Y N N 3.556 2.477 -9.383 -0.490 -0.766 0.347 CAJ LIG 19 VRZ CAH CAH C 0 1 Y N N 3.342 3.733 -9.954 0.872 -0.819 0.140 CAH LIG 20 VRZ CAY CAY C 0 1 Y N N 4.087 4.155 -11.050 1.467 0.016 -0.797 CAY LIG 21 VRZ NAV NAV N 0 1 N N N 3.931 5.422 -11.650 2.851 -0.036 -1.001 NAV LIG 22 VRZ CAW CAW C 0 1 N N N 2.826 6.164 -11.639 3.677 -0.270 0.038 CAW LIG 23 VRZ OAB OAB O 0 1 N N N 1.812 5.787 -11.091 3.217 -0.520 1.136 OAB LIG 24 VRZ NAU NAU N 0 1 N N N 2.801 7.352 -12.240 5.012 -0.228 -0.140 NAU LIG 25 VRZ CAR CAR C 0 1 N N N 1.583 8.149 -12.236 5.910 -0.483 0.989 CAR LIG 26 VRZ CAX CAX C 0 1 Y N N 1.720 9.613 -12.579 7.340 -0.377 0.528 CAX LIG 27 VRZ CAF CAF C 0 1 Y N N 1.365 10.040 -13.849 7.996 -1.495 0.046 CAF LIG 28 VRZ CAD CAD C 0 1 Y N N 1.460 11.384 -14.180 9.308 -1.397 -0.377 CAD LIG 29 VRZ CAC CAC C 0 1 Y N N 1.896 12.306 -13.238 9.965 -0.182 -0.319 CAC LIG 30 VRZ CAE CAE C 0 1 Y N N 2.242 11.884 -11.960 9.309 0.936 0.162 CAE LIG 31 VRZ CAG CAG C 0 1 Y N N 2.148 10.536 -11.632 7.995 0.839 0.581 CAG LIG 32 VRZ H1 H1 H 0 1 N N N 8.029 -0.049 -7.505 -6.337 -2.071 2.169 H1 LIG 33 VRZ H2 H2 H 0 1 N N N 8.557 -1.437 -6.494 -4.796 -2.541 1.399 H2 LIG 34 VRZ H3 H3 H 0 1 N N N 10.568 -1.468 -7.559 -5.782 -4.433 0.580 H3 LIG 35 VRZ H4 H4 H 0 1 N N N 10.060 -0.046 -8.533 -7.322 -3.964 1.352 H4 LIG 36 VRZ H5 H5 H 0 1 N N N 10.276 -2.868 -9.338 -6.980 -4.103 -1.395 H5 LIG 37 VRZ H6 H6 H 0 1 N N N 10.011 -1.414 -10.358 -8.154 -3.003 -0.610 H6 LIG 38 VRZ H7 H7 H 0 1 N N N 7.747 -1.748 -10.425 -5.303 -2.378 -1.559 H7 LIG 39 VRZ H8 H8 H 0 1 N N N 8.100 -3.399 -9.813 -6.809 -1.456 -1.877 H8 LIG 40 VRZ H9 H9 H 0 1 N N N 7.298 -2.906 -7.716 -6.939 -0.672 0.397 H9 LIG 41 VRZ H10 H10 H 0 1 N N N 7.037 0.549 -9.405 -3.320 -1.906 -0.284 H10 LIG 42 VRZ H11 H11 H 0 1 N N N 2.818 -4.106 -7.526 -6.316 3.840 0.682 H11 LIG 43 VRZ H12 H12 H 0 1 N N N 0.864 -0.553 -9.136 -1.808 4.185 0.076 H12 LIG 44 VRZ H13 H13 H 0 1 N N N 1.865 0.676 -8.743 -1.250 2.616 -0.149 H13 LIG 45 VRZ H14 H14 H 0 1 N N N 6.056 1.431 -11.389 -1.278 1.639 -1.913 H14 LIG 46 VRZ H15 H15 H 0 1 N N N 5.659 3.630 -12.404 1.154 1.545 -2.267 H15 LIG 47 VRZ H16 H16 H 0 1 N N N 2.984 2.168 -8.520 -0.951 -1.410 1.081 H16 LIG 48 VRZ H17 H17 H 0 1 N N N 2.588 4.385 -9.539 1.478 -1.504 0.714 H17 LIG 49 VRZ H18 H18 H 0 1 N N N 4.725 5.798 -12.128 3.215 0.097 -1.890 H18 LIG 50 VRZ H19 H19 H 0 1 N N N 1.147 8.084 -11.228 5.725 0.251 1.773 H19 LIG 51 VRZ H20 H20 H 0 1 N N N 1.015 9.327 -14.581 7.483 -2.444 0.001 H20 LIG 52 VRZ H21 H21 H 0 1 N N N 1.194 11.714 -15.173 9.821 -2.270 -0.752 H21 LIG 53 VRZ H22 H22 H 0 1 N N N 1.966 13.352 -13.499 10.991 -0.106 -0.648 H22 LIG 54 VRZ H23 H23 H 0 1 N N N 2.582 12.599 -11.226 9.822 1.885 0.208 H23 LIG 55 VRZ H24 H24 H 0 1 N N N 2.409 10.205 -10.638 7.481 1.713 0.953 H24 LIG 56 VRZ H25 H25 H 0 1 N N N 3.621 7.698 -12.695 5.378 -0.030 -1.015 H25 LIG 57 VRZ H26 H26 H 0 1 N N N 0.891 7.701 -12.964 5.727 -1.485 1.380 H26 LIG 58 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal VRZ CAD CAF DOUB Y N 1 VRZ CAD CAC SING Y N 2 VRZ CAF CAX SING Y N 3 VRZ CAC CAE DOUB Y N 4 VRZ CAX CAR SING N N 5 VRZ CAX CAG DOUB Y N 6 VRZ NAU CAR SING N N 7 VRZ NAU CAW SING N N 8 VRZ CAE CAG SING Y N 9 VRZ NAV CAW SING N N 10 VRZ NAV CAY SING N N 11 VRZ CAW OAB DOUB N N 12 VRZ CAI CAY DOUB Y N 13 VRZ CAI CAK SING Y N 14 VRZ CAY CAH SING Y N 15 VRZ CAK CAZ DOUB Y N 16 VRZ CAH CAJ DOUB Y N 17 VRZ CAZ CAJ SING Y N 18 VRZ CAZ CBB SING N N 19 VRZ CAQ CAO SING N N 20 VRZ CAQ CBE SING N N 21 VRZ CAO CAN SING N N 22 VRZ CBB CAM DOUB Y N 23 VRZ CBB C5 SING Y N 24 VRZ NAA C6 SING N N 25 VRZ CAM NBF SING Y N 26 VRZ C5 C6 SING Y N 27 VRZ C5 C4 DOUB Y N 28 VRZ C6 N1 DOUB Y N 29 VRZ NBF C4 SING Y N 30 VRZ NBF CBE SING N N 31 VRZ C4 N3 SING Y N 32 VRZ N1 C2 SING Y N 33 VRZ CBE CAP SING N N 34 VRZ CAN CAP SING N N 35 VRZ N3 C2 DOUB Y N 36 VRZ CAP H1 SING N N 37 VRZ CAP H2 SING N N 38 VRZ CAN H3 SING N N 39 VRZ CAN H4 SING N N 40 VRZ CAO H5 SING N N 41 VRZ CAO H6 SING N N 42 VRZ CAQ H7 SING N N 43 VRZ CAQ H8 SING N N 44 VRZ CBE H9 SING N N 45 VRZ CAM H10 SING N N 46 VRZ C2 H11 SING N N 47 VRZ NAA H12 SING N N 48 VRZ NAA H13 SING N N 49 VRZ CAK H14 SING N N 50 VRZ CAI H15 SING N N 51 VRZ CAJ H16 SING N N 52 VRZ CAH H17 SING N N 53 VRZ NAV H18 SING N N 54 VRZ CAR H19 SING N N 55 VRZ CAF H20 SING N N 56 VRZ CAD H21 SING N N 57 VRZ CAC H22 SING N N 58 VRZ CAE H23 SING N N 59 VRZ CAG H24 SING N N 60 VRZ NAU H25 SING N N 61 VRZ CAR H26 SING N N 62 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor VRZ SMILES ACDLabs 12.01 "O=C(NCc1ccccc1)Nc5ccc(c3c2c(ncnc2n(c3)C4CCCC4)N)cc5" VRZ InChI InChI 1.03 "InChI=1S/C25H26N6O/c26-23-22-21(15-31(20-8-4-5-9-20)24(22)29-16-28-23)18-10-12-19(13-11-18)30-25(32)27-14-17-6-2-1-3-7-17/h1-3,6-7,10-13,15-16,20H,4-5,8-9,14H2,(H2,26,28,29)(H2,27,30,32)" VRZ InChIKey InChI 1.03 URGKVSPXHKAWNJ-UHFFFAOYSA-N VRZ SMILES_CANONICAL CACTVS 3.370 "Nc1ncnc2n(cc(c3ccc(NC(=O)NCc4ccccc4)cc3)c12)C5CCCC5" VRZ SMILES CACTVS 3.370 "Nc1ncnc2n(cc(c3ccc(NC(=O)NCc4ccccc4)cc3)c12)C5CCCC5" VRZ SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "c1ccc(cc1)CNC(=O)Nc2ccc(cc2)c3cn(c4c3c(ncn4)N)C5CCCC5" VRZ SMILES "OpenEye OEToolkits" 1.7.6 "c1ccc(cc1)CNC(=O)Nc2ccc(cc2)c3cn(c4c3c(ncn4)N)C5CCCC5" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier VRZ "SYSTEMATIC NAME" ACDLabs 12.01 "1-[4-(4-amino-7-cyclopentyl-7H-pyrrolo[2,3-d]pyrimidin-5-yl)phenyl]-3-benzylurea" VRZ "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "1-[4-(4-azanyl-7-cyclopentyl-pyrrolo[2,3-d]pyrimidin-5-yl)phenyl]-3-(phenylmethyl)urea" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site VRZ "Create component" 2012-05-28 PDBJ VRZ "Initial release" 2013-05-01 RCSB #