data_VSM # _chem_comp.id VSM _chem_comp.name "[(3~{S},5~{S},8~{S},13~{R},14~{R})-5,14-dimethyl-16-oxidanylidene-1,2,3,4,6,7,8,11,12,13,15,17-dodecahydrocyclopenta[a]phenanthren-3-yl] sulfamate" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C19 H29 N O4 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-03-31 _chem_comp.pdbx_modified_date 2024-04-05 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 367.503 _chem_comp.one_letter_code ? _chem_comp.three_letter_code VSM _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8OLM _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal VSM C1 C1 C 0 1 N N N N N N -3.547 4.995 13.895 -0.811 -1.502 -0.081 C1 VSM 1 VSM C2 C2 C 0 1 N N N N N N -3.498 3.493 14.357 -2.214 -1.326 -0.630 C2 VSM 2 VSM C3 C3 C 0 1 N N S N N N -4.868 2.991 14.695 -2.780 0.045 -0.278 C3 VSM 3 VSM O3 O1 O 0 1 N N N N N N -4.828 1.518 15.016 -4.109 0.159 -0.791 O3 VSM 4 VSM C4 C4 C 0 1 N N N N N N -5.687 3.048 13.480 -1.897 1.128 -0.900 C4 VSM 5 VSM C5 C5 C 0 1 N N S N N N -5.580 4.368 12.665 -0.518 1.092 -0.237 C5 VSM 6 VSM C6 C6 C 0 1 N N N N N N -5.684 4.046 11.121 0.387 2.085 -0.970 C6 VSM 7 VSM C7 C7 C 0 1 N N N N N N -6.086 5.365 10.300 1.809 1.950 -0.429 C7 VSM 8 VSM C8 C8 C 0 1 N N S N N N -4.825 6.286 10.505 2.355 0.568 -0.747 C8 VSM 9 VSM C9 C9 C 0 1 N N N N N N -4.124 6.177 11.816 1.330 -0.516 -0.543 C9 VSM 10 VSM C10 C10 C 0 1 N N N N N N -4.360 5.127 12.751 0.059 -0.290 -0.305 C10 VSM 11 VSM C11 C11 C 0 1 N N N N N N -2.919 6.981 11.889 1.764 -1.970 -0.613 C11 VSM 12 VSM C12 C12 C 0 1 N N N N N N -3.102 8.402 11.293 3.056 -2.181 0.194 C12 VSM 13 VSM C13 C13 C 0 1 N N R N N N -3.752 8.323 9.935 4.065 -1.154 -0.288 C13 VSM 14 VSM C14 C14 C 0 1 N N R N N N -5.107 7.776 10.069 3.541 0.243 0.145 C14 VSM 15 VSM C15 C15 C 0 1 N N N N N N -5.543 7.943 8.597 4.769 1.133 -0.027 C15 VSM 16 VSM C16 C16 C 0 1 N N N N N N -4.853 9.118 8.173 5.972 0.222 0.190 C16 VSM 17 VSM C17 C17 C 0 1 N N N N N N -3.955 9.622 9.147 5.431 -1.192 0.406 C17 VSM 18 VSM C18 C18 C 0 1 N N N N N N -6.079 8.587 10.995 3.100 0.207 1.609 C18 VSM 19 VSM C C19 C 0 1 N N N N N N -6.681 5.212 13.284 -0.649 1.515 1.227 C VSM 20 VSM O16 O2 O 0 1 N N N N N N -5.021 9.640 7.031 7.133 0.554 0.191 O16 VSM 21 VSM S22 S1 S 0 1 N N N N N N -5.523 1.038 16.370 -5.194 -0.191 0.218 S22 VSM 22 VSM O20 O3 O 0 1 N N N N N N -7.006 1.432 16.394 -6.418 -0.220 -0.503 O20 VSM 23 VSM O21 O4 O 0 1 N N N N N N -4.801 1.522 17.608 -4.705 -1.296 0.965 O21 VSM 24 VSM N19 N1 N 0 1 N N N N N N -5.335 -0.521 16.295 -5.306 1.077 1.277 N19 VSM 25 VSM H1 H1 H 0 1 N N N N N N -2.528 5.335 13.658 -0.875 -1.696 0.990 H1 VSM 26 VSM H2 H2 H 0 1 N N N N N N -3.960 5.611 14.707 -0.348 -2.361 -0.566 H2 VSM 27 VSM H3 H3 H 0 1 N N N N N N -3.080 2.880 13.545 -2.188 -1.434 -1.715 H3 VSM 28 VSM H4 H4 H 0 1 N N N N N N -2.855 3.411 15.246 -2.861 -2.098 -0.211 H4 VSM 29 VSM H5 H5 H 0 1 N N N N N N -5.315 3.567 15.519 -2.796 0.165 0.805 H5 VSM 30 VSM H6 H6 H 0 1 N N N N N N -6.739 2.914 13.773 -1.793 0.943 -1.969 H6 VSM 31 VSM H7 H7 H 0 1 N N N N N N -5.381 2.219 12.825 -2.354 2.105 -0.742 H7 VSM 32 VSM H8 H8 H 0 1 N N N N N N -6.450 3.273 10.963 0.381 1.864 -2.038 H8 VSM 33 VSM H9 H9 H 0 1 N N N N N N -4.712 3.677 10.761 0.026 3.100 -0.805 H9 VSM 34 VSM H10 H10 H 0 1 N N N N N N -6.992 5.832 10.715 2.445 2.706 -0.890 H10 VSM 35 VSM H11 H11 H 0 1 N N N N N N -6.245 5.138 9.235 1.800 2.096 0.651 H11 VSM 36 VSM H12 H12 H 0 1 N N N N N N -4.100 5.921 9.763 2.688 0.550 -1.785 H12 VSM 37 VSM H15 H15 H 0 1 N N N N N N -2.121 6.468 11.333 0.976 -2.602 -0.204 H15 VSM 38 VSM H16 H16 H 0 1 N N N N N N -2.626 7.079 12.945 1.942 -2.244 -1.653 H16 VSM 39 VSM H17 H17 H 0 1 N N N N N N -2.118 8.884 11.196 2.858 -2.036 1.256 H17 VSM 40 VSM H18 H18 H 0 1 N N N N N N -3.737 8.998 11.965 3.440 -3.187 0.023 H18 VSM 41 VSM H19 H19 H 0 1 N N N N N N -3.157 7.640 9.310 4.171 -1.205 -1.371 H19 VSM 42 VSM H20 H20 H 0 1 N N N N N N -6.632 8.079 8.523 4.792 1.554 -1.032 H20 VSM 43 VSM H21 H21 H 0 1 N N N N N N -5.241 7.072 7.997 4.762 1.932 0.715 H21 VSM 44 VSM H22 H22 H 0 1 N N N N N N -3.019 9.990 8.701 5.317 -1.402 1.469 H22 VSM 45 VSM H23 H23 H 0 1 N N N N N N -4.407 10.416 9.760 6.082 -1.929 -0.065 H23 VSM 46 VSM H24 H24 H 0 1 N N N N N N -5.770 8.469 12.044 3.944 -0.080 2.236 H24 VSM 47 VSM H25 H25 H 0 1 N N N N N N -6.044 9.651 10.720 2.746 1.195 1.906 H25 VSM 48 VSM H26 H26 H 0 1 N N N N N N -7.105 8.209 10.870 2.295 -0.518 1.729 H26 VSM 49 VSM H27 H27 H 0 1 N N N N N N -6.477 5.353 14.356 0.334 1.506 1.698 H27 VSM 50 VSM H28 H28 H 0 1 N N N N N N -6.716 6.192 12.785 -1.068 2.520 1.280 H28 VSM 51 VSM H29 H29 H 0 1 N N N N N N -7.648 4.702 13.159 -1.307 0.819 1.748 H29 VSM 52 VSM H30 H30 H 0 1 N N N N N N -5.738 -0.945 17.106 -6.154 1.282 1.701 H30 VSM 53 VSM H31 H31 H 0 1 N N N N N N -5.787 -0.872 15.475 -4.523 1.616 1.474 H31 VSM 54 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal VSM O16 C16 DOUB N N 1 VSM C16 C15 SING N N 2 VSM C16 C17 SING N N 3 VSM C15 C14 SING N N 4 VSM C17 C13 SING N N 5 VSM C13 C14 SING N N 6 VSM C13 C12 SING N N 7 VSM C14 C8 SING N N 8 VSM C14 C18 SING N N 9 VSM C7 C8 SING N N 10 VSM C7 C6 SING N N 11 VSM C8 C9 SING N N 12 VSM C6 C5 SING N N 13 VSM C12 C11 SING N N 14 VSM C9 C11 SING N N 15 VSM C9 C10 DOUB N N 16 VSM C5 C10 SING N N 17 VSM C5 C SING N N 18 VSM C5 C4 SING N N 19 VSM C10 C1 SING N N 20 VSM C4 C3 SING N N 21 VSM C1 C2 SING N N 22 VSM C2 C3 SING N N 23 VSM C3 O3 SING N N 24 VSM O3 S22 SING N N 25 VSM N19 S22 SING N N 26 VSM S22 O20 DOUB N N 27 VSM S22 O21 DOUB N N 28 VSM C1 H1 SING N N 29 VSM C1 H2 SING N N 30 VSM C2 H3 SING N N 31 VSM C2 H4 SING N N 32 VSM C3 H5 SING N N 33 VSM C4 H6 SING N N 34 VSM C4 H7 SING N N 35 VSM C6 H8 SING N N 36 VSM C6 H9 SING N N 37 VSM C7 H10 SING N N 38 VSM C7 H11 SING N N 39 VSM C8 H12 SING N N 40 VSM C11 H15 SING N N 41 VSM C11 H16 SING N N 42 VSM C12 H17 SING N N 43 VSM C12 H18 SING N N 44 VSM C13 H19 SING N N 45 VSM C15 H20 SING N N 46 VSM C15 H21 SING N N 47 VSM C17 H22 SING N N 48 VSM C17 H23 SING N N 49 VSM C18 H24 SING N N 50 VSM C18 H25 SING N N 51 VSM C18 H26 SING N N 52 VSM C H27 SING N N 53 VSM C H28 SING N N 54 VSM C H29 SING N N 55 VSM N19 H30 SING N N 56 VSM N19 H31 SING N N 57 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor VSM InChI InChI 1.06 "InChI=1S/C19H29NO4S/c1-18-8-7-17-15(5-3-12-9-13(21)10-19(12,17)2)16(18)6-4-14(11-18)24-25(20,22)23/h12,14,17H,3-11H2,1-2H3,(H2,20,22,23)/t12-,14+,17-,18+,19-/m1/s1" VSM InChIKey InChI 1.06 DJFIEPZQLUEUTN-ZOLDJLEQSA-N VSM SMILES_CANONICAL CACTVS 3.385 "C[C@@]12CC[C@@H]3C(=C1CC[C@@H](C2)O[S](N)(=O)=O)CC[C@@H]4CC(=O)C[C@@]34C" VSM SMILES CACTVS 3.385 "C[C]12CC[CH]3C(=C1CC[CH](C2)O[S](N)(=O)=O)CC[CH]4CC(=O)C[C]34C" VSM SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C[C@@]12CC[C@@H]3C(=C1CC[C@@H](C2)OS(=O)(=O)N)CC[C@H]4[C@]3(CC(=O)C4)C" VSM SMILES "OpenEye OEToolkits" 2.0.7 "CC12CCC3C(=C1CCC(C2)OS(=O)(=O)N)CCC4C3(CC(=O)C4)C" # _pdbx_chem_comp_identifier.comp_id VSM _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "[(3~{S},5~{S},8~{S},13~{R},14~{R})-5,14-dimethyl-16-oxidanylidene-1,2,3,4,6,7,8,11,12,13,15,17-dodecahydrocyclopenta[a]phenanthren-3-yl] sulfamate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site VSM "Create component" 2023-03-31 PDBE VSM "Modify aromatic_flag" 2024-04-03 PDBE VSM "Initial release" 2024-04-10 RCSB #