data_VSV # _chem_comp.id VSV _chem_comp.name "N-({3-[({4-[(Z)-(2,4-DIOXO-1,3-THIAZOLIDIN-5-YLIDENE)METHYL]PHENYL}AMINO)METHYL]PHENYL}CARBONYL)-D-GLUTAMIC ACID" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C23 H21 N3 O7 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2010-02-10 _chem_comp.pdbx_modified_date 2011-06-04 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 483.494 _chem_comp.one_letter_code ? _chem_comp.three_letter_code VSV _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 2X5O _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site EBI # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal VSV OE1 OE1 O 0 1 N N N -5.256 32.276 20.357 8.741 3.005 1.675 OE1 VSV 1 VSV CD CD C 0 1 N N N -5.138 31.477 21.343 8.701 1.741 1.226 CD VSV 2 VSV OE2 OE2 O 0 1 N N N -4.240 31.558 22.210 9.708 1.213 0.816 OE2 VSV 3 VSV CG CG C 0 1 N N N -6.122 30.440 21.674 7.400 0.980 1.231 CG VSV 4 VSV CB CB C 0 1 N N N -7.032 30.201 20.531 7.629 -0.426 0.672 CB VSV 5 VSV C C C 0 1 N N N -7.469 27.733 20.971 6.556 -2.620 0.243 C VSV 6 VSV OXT OXT O 0 1 N Y N -7.378 27.000 19.966 6.003 -3.057 -0.738 OXT VSV 7 VSV O O O 0 1 N N N -7.216 27.266 22.108 7.392 -3.401 0.946 O VSV 8 VSV N N N 0 1 N N N -9.142 29.231 20.048 5.367 -0.562 -0.246 N VSV 9 VSV CAU CAU C 0 1 N N N -10.390 28.622 20.410 4.040 -0.712 -0.065 CAU VSV 10 VSV OBC OBC O 0 1 N N N -10.488 27.783 21.311 3.624 -1.375 0.865 OBC VSV 11 VSV CAT CAT C 0 1 Y N N -11.482 29.028 19.499 3.089 -0.070 -0.998 CAT VSV 12 VSV CAQ CAQ C 0 1 Y N N -11.451 30.329 18.949 1.714 -0.224 -0.814 CAQ VSV 13 VSV CAS CAS C 0 1 Y N N -12.558 28.181 19.284 3.563 0.697 -2.064 CAS VSV 14 VSV CAR CAR C 0 1 Y N N -13.615 28.607 18.512 2.670 1.293 -2.930 CAR VSV 15 VSV CAP CAP C 0 1 Y N N -13.608 29.853 17.954 1.309 1.133 -2.745 CAP VSV 16 VSV CAO CAO C 0 1 Y N N -12.553 30.726 18.163 0.832 0.378 -1.687 CAO VSV 17 VSV CAN CAN C 0 1 N N N -12.556 32.047 17.400 -0.652 0.213 -1.490 CAN VSV 18 VSV NAY NAY N 0 1 N N N -13.792 32.666 17.360 -1.153 1.288 -0.629 NAY VSV 19 VSV CAA CAA C 0 1 Y N N -14.448 33.107 18.473 -2.505 1.346 -0.303 CAA VSV 20 VSV CAC CAC C 0 1 Y N N -13.923 32.945 19.765 -2.978 2.368 0.515 CAC VSV 21 VSV CAE CAE C 0 1 Y N N -14.643 33.293 20.903 -4.309 2.430 0.839 CAE VSV 22 VSV CAB CAB C 0 1 Y N N -15.712 33.704 18.331 -3.381 0.385 -0.801 CAB VSV 23 VSV CAG CAG C 0 1 Y N N -16.443 34.072 19.468 -4.713 0.438 -0.483 CAG VSV 24 VSV CAF CAF C 0 1 Y N N -15.933 33.837 20.743 -5.193 1.462 0.345 CAF VSV 25 VSV CAH CAH C 0 1 N N N -16.690 34.148 22.008 -6.619 1.523 0.688 CAH VSV 26 VSV CAI CAI C 0 1 N N N -18.023 34.397 22.225 -7.389 0.409 0.592 CAI VSV 27 VSV SBG SBG S 0 1 N N N -19.305 34.513 21.035 -6.866 -1.254 0.257 SBG VSV 28 VSV CAL CAL C 0 1 N N N -20.464 34.844 22.292 -8.502 -1.933 0.331 CAL VSV 29 VSV NAX NAX N 0 1 N N N -20.011 34.772 23.605 -9.333 -0.918 0.594 NAX VSV 30 VSV CA CA C 0 1 N N R -8.057 29.147 20.998 6.309 -1.198 0.678 CA VSV 31 VSV CAK CAK C 0 1 N N N -18.629 34.513 23.539 -8.843 0.301 0.746 CAK VSV 32 VSV OBE OBE O 0 1 N N N -17.927 34.501 24.541 -9.548 1.263 0.993 OBE VSV 33 VSV OBH OBH O 0 1 N N N -21.653 35.006 22.082 -8.810 -3.099 0.173 OBH VSV 34 VSV HE1 HE1 H 0 1 N N N -4.564 32.926 20.391 9.598 3.452 1.652 HE1 VSV 35 VSV HG1C HG1C H 0 0 N N N -5.593 29.506 21.914 7.026 0.908 2.252 HG1C VSV 36 VSV HG2C HG2C H 0 0 N N N -6.716 30.776 22.537 6.671 1.503 0.613 HG2C VSV 37 VSV HB1C HB1C H 0 0 N N N -7.542 31.133 20.244 8.004 -0.354 -0.349 HB1C VSV 38 VSV HB2C HB2C H 0 0 N N N -6.476 29.849 19.649 8.359 -0.949 1.291 HB2C VSV 39 VSV HA HA H 0 1 N N N -8.372 29.340 22.034 5.889 -1.194 1.684 HA VSV 40 VSV H H H 0 1 N N N -6.973 26.351 22.028 7.519 -4.305 0.629 H VSV 41 VSV HB HB H 0 1 N N N -9.028 29.696 19.170 5.698 -0.033 -0.989 HB VSV 42 VSV HAQ HAQ H 0 1 N N N -10.617 30.993 19.123 1.341 -0.813 0.011 HAQ VSV 43 VSV HAS HAS H 0 1 N N N -12.567 27.193 19.720 4.625 0.823 -2.210 HAS VSV 44 VSV HAR HAR H 0 1 N N N -14.456 27.950 18.346 3.035 1.887 -3.755 HAR VSV 45 VSV HAP HAP H 0 1 N N N -14.440 30.163 17.339 0.614 1.603 -3.426 HAP VSV 46 VSV HAN1 HAN1 H 0 0 N N N -11.849 32.729 17.896 -1.155 0.258 -2.456 HAN1 VSV 47 VSV HAN2 HAN2 H 0 0 N N N -12.275 31.820 16.361 -0.852 -0.750 -1.021 HAN2 VSV 48 VSV HAY HAY H 0 1 N N N -13.656 33.482 16.798 -0.542 1.959 -0.286 HAY VSV 49 VSV HAC HAC H 0 1 N N N -12.929 32.538 19.879 -2.296 3.114 0.896 HAC VSV 50 VSV HAB HAB H 0 1 N N N -16.120 33.879 17.346 -3.010 -0.404 -1.439 HAB VSV 51 VSV HAE HAE H 0 1 N N N -14.223 33.149 21.887 -4.675 3.223 1.474 HAE VSV 52 VSV HAG HAG H 0 1 N N N -17.409 34.541 19.355 -5.392 -0.308 -0.870 HAG VSV 53 VSV HAH HAH H 0 1 N N N -16.079 34.181 22.898 -7.055 2.454 1.017 HAH VSV 54 VSV HAX HAX H 0 1 N N N -20.560 34.883 24.434 -10.286 -1.076 0.677 HAX VSV 55 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal VSV OE1 CD SING N N 1 VSV CD OE2 DOUB N N 2 VSV CD CG SING N N 3 VSV CG CB SING N N 4 VSV CB CA SING N N 5 VSV C OXT DOUB N N 6 VSV C O SING N N 7 VSV C CA SING N N 8 VSV N CAU SING N N 9 VSV N CA SING N N 10 VSV CAU OBC DOUB N N 11 VSV CAU CAT SING N N 12 VSV CAT CAQ SING Y N 13 VSV CAT CAS DOUB Y N 14 VSV CAQ CAO DOUB Y N 15 VSV CAS CAR SING Y N 16 VSV CAR CAP DOUB Y N 17 VSV CAP CAO SING Y N 18 VSV CAO CAN SING N N 19 VSV CAN NAY SING N N 20 VSV NAY CAA SING N N 21 VSV CAA CAC SING Y N 22 VSV CAA CAB DOUB Y N 23 VSV CAC CAE DOUB Y N 24 VSV CAE CAF SING Y N 25 VSV CAB CAG SING Y N 26 VSV CAG CAF DOUB Y N 27 VSV CAF CAH SING N N 28 VSV CAH CAI DOUB N N 29 VSV CAI SBG SING N N 30 VSV CAI CAK SING N N 31 VSV SBG CAL SING N N 32 VSV CAL NAX SING N N 33 VSV CAL OBH DOUB N N 34 VSV NAX CAK SING N N 35 VSV CAK OBE DOUB N N 36 VSV OE1 HE1 SING N N 37 VSV CG HG1C SING N N 38 VSV CG HG2C SING N N 39 VSV CB HB1C SING N N 40 VSV CB HB2C SING N N 41 VSV CA HA SING N N 42 VSV O H SING N N 43 VSV N HB SING N N 44 VSV CAQ HAQ SING N N 45 VSV CAS HAS SING N N 46 VSV CAR HAR SING N Z 47 VSV CAP HAP SING N N 48 VSV CAN HAN1 SING N N 49 VSV CAN HAN2 SING N N 50 VSV NAY HAY SING N N 51 VSV CAC HAC SING N N 52 VSV CAB HAB SING N N 53 VSV CAE HAE SING N N 54 VSV CAG HAG SING N N 55 VSV CAH HAH SING N N 56 VSV NAX HAX SING N N 57 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor VSV SMILES ACDLabs 10.04 "O=C1C(\SC(=O)N1)=C\c3ccc(NCc2cc(C(=O)NC(C(=O)O)CCC(=O)O)ccc2)cc3" VSV SMILES_CANONICAL CACTVS 3.352 "OC(=O)CC[C@@H](NC(=O)c1cccc(CNc2ccc(cc2)\C=C3/SC(=O)NC3=O)c1)C(O)=O" VSV SMILES CACTVS 3.352 "OC(=O)CC[CH](NC(=O)c1cccc(CNc2ccc(cc2)C=C3SC(=O)NC3=O)c1)C(O)=O" VSV SMILES_CANONICAL "OpenEye OEToolkits" 1.6.1 "c1cc(cc(c1)C(=O)N[C@H](CCC(=O)O)C(=O)O)CNc2ccc(cc2)\C=C/3\C(=O)NC(=O)S3" VSV SMILES "OpenEye OEToolkits" 1.6.1 "c1cc(cc(c1)C(=O)NC(CCC(=O)O)C(=O)O)CNc2ccc(cc2)C=C3C(=O)NC(=O)S3" VSV InChI InChI 1.03 "InChI=1S/C23H21N3O7S/c27-19(28)9-8-17(22(31)32)25-20(29)15-3-1-2-14(10-15)12-24-16-6-4-13(5-7-16)11-18-21(30)26-23(33)34-18/h1-7,10-11,17,24H,8-9,12H2,(H,25,29)(H,27,28)(H,31,32)(H,26,30,33)/b18-11-/t17-/m1/s1" VSV InChIKey InChI 1.03 YITBSJALJWUAQA-LVSMMTLPSA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier VSV "SYSTEMATIC NAME" ACDLabs 10.04 "N-({3-[({4-[(Z)-(2,4-dioxo-1,3-thiazolidin-5-ylidene)methyl]phenyl}amino)methyl]phenyl}carbonyl)-D-glutamic acid" VSV "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.6.1 "(2R)-2-[[3-[[[4-[(Z)-(2,4-dioxo-1,3-thiazolidin-5-ylidene)methyl]phenyl]amino]methyl]phenyl]carbonylamino]pentanedioic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site VSV "Create component" 2010-02-10 EBI VSV "Modify aromatic_flag" 2011-06-04 RCSB VSV "Modify descriptor" 2011-06-04 RCSB #