data_VSZ # _chem_comp.id VSZ _chem_comp.name "Cystargolide A (bound)" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C18 H32 N2 O6" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "(2S,3S)-2-[[(2S)-2-[[(2R,3S)-3-methanoyl-4-methyl-2-oxidanyl-pentanoyl]amino]-3-methyl-butanoyl]amino]-3-methyl-pentanoic acid" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-03-31 _chem_comp.pdbx_modified_date 2023-12-01 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 372.456 _chem_comp.one_letter_code ? _chem_comp.three_letter_code VSZ _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8OLR _chem_comp.pdbx_subcomponent_list "V08 VAL ILE" _chem_comp.pdbx_processing_site PDBE # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal VSZ C9 C11 C 0 1 N N R N N N 63.408 -137.505 41.556 3.512 0.034 1.334 C4 V08 1 VSZ C4 C1 C 0 1 N N S N N N 63.050 -136.273 42.350 4.111 -0.528 0.043 C7 V08 2 VSZ C5 C2 C 0 1 N N N N N N 64.111 -135.209 42.172 5.320 -1.403 0.381 C8 V08 3 VSZ O12 O3 O 0 1 N N N N N N 61.245 -138.268 40.977 2.199 1.991 1.203 O8 V08 4 VSZ C11 C12 C 0 1 N N N N N N 62.244 -138.458 41.645 2.251 0.794 1.013 C3 V08 5 VSZ O10 O2 O 0 1 N N N N N N 64.553 -138.060 42.140 4.453 0.913 1.953 O5 V08 6 VSZ C6 C3 C 0 1 N N N N N N 64.385 -134.992 40.710 4.878 -2.557 1.283 C37 V08 7 VSZ C7 C4 C 0 1 N N N N N N 63.554 -133.930 42.721 5.919 -1.965 -0.909 C9 V08 8 VSZ C1 C10 C 0 1 N N N N N N 63.060 -136.648 43.792 4.546 0.609 -0.845 C16 V08 9 VSZ O3 O1 O 0 1 N N N N N N 62.095 -136.451 44.511 4.065 0.733 -1.946 O17 V08 10 VSZ N13 N1 N 0 1 N N N N N N 62.357 -139.468 42.486 1.181 0.145 0.514 N VAL 11 VSZ C14 C13 C 0 1 N N S N N N 61.269 -140.403 42.660 -0.045 0.883 0.201 CA VAL 12 VSZ C18 C15 C 0 1 N N N N N N 60.798 -140.212 44.048 -1.225 -0.052 0.260 C VAL 13 VSZ O19 O4 O 0 1 N N N N N N 61.565 -140.231 44.979 -1.046 -1.248 0.363 O VAL 14 VSZ C15 C5 C 0 1 N N N N N N 61.741 -141.831 42.532 0.063 1.480 -1.203 CB VAL 15 VSZ C17 C6 C 0 1 N N N N N N 60.526 -142.716 42.650 1.164 2.543 -1.222 CG1 VAL 16 VSZ C16 C14 C 0 1 N N N N N N 62.363 -142.043 41.175 0.405 0.374 -2.203 CG2 VAL 17 VSZ N20 N2 N 0 1 N N N N N N 59.531 -140.005 44.180 -2.478 0.439 0.198 N ILE 18 VSZ C21 C7 C 0 1 N N S N N N 58.977 -139.777 45.490 -3.625 -0.459 0.354 CA ILE 19 VSZ C25 C16 C 0 1 N N N N N N 58.056 -140.909 45.751 -3.959 -1.084 -0.976 C ILE 20 VSZ O26 O5 O 0 1 N N N N N N 57.271 -141.176 44.837 -3.306 -0.808 -1.954 O ILE 21 VSZ C22 C8 C 0 1 N N S N N N 58.173 -138.489 45.415 -4.830 0.336 0.860 CB ILE 22 VSZ C23 C17 C 0 1 N N N N N N 57.324 -138.314 46.651 -5.991 -0.620 1.142 CG1 ILE 23 VSZ C24 C9 C 0 1 N N N N N N 57.304 -138.554 44.179 -5.254 1.352 -0.203 CG2 ILE 24 VSZ C42 C18 C 0 1 N N N N N N 55.907 -138.789 46.391 -7.152 0.157 1.765 CD1 ILE 25 VSZ O27 O6 O 0 1 N N N N N N 58.152 -141.488 46.841 -4.982 -1.948 -1.074 OXT ILE 26 VSZ H19 H19 H 0 1 N N N N N N 63.586 -137.232 40.505 3.278 -0.786 2.013 H1 V08 27 VSZ H1 H1 H 0 1 N N N N N N 62.063 -135.890 42.050 3.362 -1.128 -0.474 H2 V08 28 VSZ H2 H2 H 0 1 N N N N N N 65.033 -135.491 42.702 6.069 -0.804 0.899 H3 V08 29 VSZ H20 H20 H 0 1 N N N N N N 65.273 -137.444 42.073 4.707 1.667 1.404 H5 V08 30 VSZ H3 H3 H 0 1 N N N N N N 65.157 -134.217 40.592 5.739 -3.180 1.524 H6 V08 31 VSZ H4 H4 H 0 1 N N N N N N 64.737 -135.932 40.260 4.451 -2.157 2.203 H7 V08 32 VSZ H5 H5 H 0 1 N N N N N N 63.461 -134.668 40.208 4.129 -3.157 0.766 H8 V08 33 VSZ H6 H6 H 0 1 N N N N N N 63.341 -134.053 43.793 6.234 -1.143 -1.552 H9 V08 34 VSZ H7 H7 H 0 1 N N N N N N 64.287 -133.122 42.583 6.780 -2.589 -0.669 H10 V08 35 VSZ H8 H8 H 0 1 N N N N N N 62.625 -133.677 42.189 5.170 -2.565 -1.427 H11 V08 36 VSZ H18 H18 H 0 1 N N N N N N 63.944 -137.106 44.211 5.288 1.312 -0.498 H12 V08 37 VSZ H21 H21 H 0 1 N N N N N N 63.202 -139.588 43.007 1.222 -0.813 0.361 H VAL 38 VSZ H22 H22 H 0 1 N N N N N N 60.457 -140.205 41.944 -0.181 1.685 0.928 HA VAL 39 VSZ H9 H9 H 0 1 N N N N N N 62.465 -142.067 43.326 -0.888 1.938 -1.478 HB VAL 40 VSZ H10 H10 H 0 1 N N N N N N 60.061 -142.572 43.636 2.107 2.095 -0.909 HG11 VAL 41 VSZ H11 H11 H 0 1 N N N N N N 59.804 -142.454 41.863 1.268 2.940 -2.232 HG12 VAL 42 VSZ H12 H12 H 0 1 N N N N N N 60.826 -143.768 42.537 0.901 3.351 -0.539 HG13 VAL 43 VSZ H23 H23 H 0 1 N N N N N N 63.252 -141.403 41.074 1.355 -0.083 -1.928 HG21 VAL 44 VSZ H24 H24 H 0 1 N N N N N N 62.657 -143.098 41.067 -0.380 -0.383 -2.189 HG22 VAL 45 VSZ H25 H25 H 0 1 N N N N N N 61.634 -141.784 40.393 0.482 0.799 -3.203 HG23 VAL 46 VSZ H26 H26 H 0 1 N N N N N N 58.936 -140.003 43.376 -2.621 1.387 0.049 H ILE 47 VSZ H13 H13 H 0 1 N N N N N N 59.757 -139.707 46.262 -3.379 -1.242 1.072 HA ILE 48 VSZ H14 H14 H 0 1 N N N N N N 58.864 -137.638 45.327 -4.561 0.860 1.777 HB ILE 49 VSZ H28 H28 H 0 1 N N N N N N 57.757 -138.900 47.474 -6.319 -1.079 0.209 HG12 ILE 50 VSZ H29 H29 H 0 1 N N N N N N 57.304 -137.250 46.929 -5.662 -1.397 1.832 HG13 ILE 51 VSZ H15 H15 H 0 1 N N N N N N 56.709 -137.632 44.099 -5.523 0.828 -1.119 HG21 ILE 52 VSZ H16 H16 H 0 1 N N N N N N 57.941 -138.658 43.288 -6.112 1.919 0.158 HG22 ILE 53 VSZ H17 H17 H 0 1 N N N N N N 56.630 -139.420 44.250 -4.427 2.033 -0.403 HG23 ILE 54 VSZ H30 H30 H 0 1 N N N N N N 55.302 -138.655 47.300 -6.824 0.615 2.698 HD11 ILE 55 VSZ H31 H31 H 0 1 N N N N N N 55.469 -138.203 45.570 -7.481 0.934 1.075 HD12 ILE 56 VSZ H32 H32 H 0 1 N N N N N N 55.922 -139.854 46.115 -7.979 -0.525 1.966 HD13 ILE 57 VSZ H27 H27 H 0 1 N N N N N N 57.516 -142.193 46.883 -5.158 -2.323 -1.948 HXT ILE 58 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal VSZ C6 C5 SING N N 1 VSZ O12 C11 DOUB N N 2 VSZ C16 C15 SING N N 3 VSZ C9 C11 SING N N 4 VSZ C9 O10 SING N N 5 VSZ C9 C4 SING N N 6 VSZ C11 N13 SING N N 7 VSZ C5 C4 SING N N 8 VSZ C5 C7 SING N N 9 VSZ C4 C1 SING N N 10 VSZ N13 C14 SING N N 11 VSZ C15 C17 SING N N 12 VSZ C15 C14 SING N N 13 VSZ C14 C18 SING N N 14 VSZ C1 O3 DOUB N N 15 VSZ C18 N20 SING N N 16 VSZ C18 O19 DOUB N N 17 VSZ C24 C22 SING N N 18 VSZ N20 C21 SING N N 19 VSZ O26 C25 DOUB N N 20 VSZ C22 C21 SING N N 21 VSZ C22 C23 SING N N 22 VSZ C21 C25 SING N N 23 VSZ C25 O27 SING N N 24 VSZ C42 C23 SING N N 25 VSZ C4 H1 SING N N 26 VSZ C5 H2 SING N N 27 VSZ C6 H3 SING N N 28 VSZ C6 H4 SING N N 29 VSZ C6 H5 SING N N 30 VSZ C7 H6 SING N N 31 VSZ C7 H7 SING N N 32 VSZ C7 H8 SING N N 33 VSZ C15 H9 SING N N 34 VSZ C17 H10 SING N N 35 VSZ C17 H11 SING N N 36 VSZ C17 H12 SING N N 37 VSZ C21 H13 SING N N 38 VSZ C22 H14 SING N N 39 VSZ C24 H15 SING N N 40 VSZ C24 H16 SING N N 41 VSZ C24 H17 SING N N 42 VSZ C1 H18 SING N N 43 VSZ C9 H19 SING N N 44 VSZ O10 H20 SING N N 45 VSZ N13 H21 SING N N 46 VSZ C14 H22 SING N N 47 VSZ C16 H23 SING N N 48 VSZ C16 H24 SING N N 49 VSZ C16 H25 SING N N 50 VSZ N20 H26 SING N N 51 VSZ O27 H27 SING N N 52 VSZ C23 H28 SING N N 53 VSZ C23 H29 SING N N 54 VSZ C42 H30 SING N N 55 VSZ C42 H31 SING N N 56 VSZ C42 H32 SING N N 57 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor VSZ InChI InChI 1.06 "InChI=1S/C18H32N2O6/c1-7-11(6)14(18(25)26)20-16(23)13(10(4)5)19-17(24)15(22)12(8-21)9(2)3/h8-15,22H,7H2,1-6H3,(H,19,24)(H,20,23)(H,25,26)/t11-,12-,13-,14-,15+/m0/s1" VSZ InChIKey InChI 1.06 NPCIMWWVLQVJPA-YYFQZIEXSA-N VSZ SMILES_CANONICAL CACTVS 3.385 "CC[C@H](C)[C@H](NC(=O)[C@@H](NC(=O)[C@H](O)[C@@H](C=O)C(C)C)C(C)C)C(O)=O" VSZ SMILES CACTVS 3.385 "CC[CH](C)[CH](NC(=O)[CH](NC(=O)[CH](O)[CH](C=O)C(C)C)C(C)C)C(O)=O" VSZ SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC[C@H](C)[C@@H](C(=O)O)NC(=O)[C@H](C(C)C)NC(=O)[C@@H]([C@@H](C=O)C(C)C)O" VSZ SMILES "OpenEye OEToolkits" 2.0.7 "CCC(C)C(C(=O)O)NC(=O)C(C(C)C)NC(=O)C(C(C=O)C(C)C)O" # _pdbx_chem_comp_identifier.comp_id VSZ _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(2~{S},3~{S})-2-[[(2~{S})-2-[[(2~{R},3~{S})-3-methanoyl-4-methyl-2-oxidanyl-pentanoyl]amino]-3-methyl-butanoyl]amino]-3-methyl-pentanoic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site VSZ "Create component" 2023-03-31 PDBE VSZ "Modify name" 2023-11-01 PDBE VSZ "Modify subcomponent list" 2023-11-02 PDBE VSZ "Initial release" 2023-12-06 RCSB # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id VSZ _pdbx_chem_comp_synonyms.name "(2S,3S)-2-[[(2S)-2-[[(2R,3S)-3-methanoyl-4-methyl-2-oxidanyl-pentanoyl]amino]-3-methyl-butanoyl]amino]-3-methyl-pentanoic acid" _pdbx_chem_comp_synonyms.provenance PDB _pdbx_chem_comp_synonyms.type ? #