data_VT0 # _chem_comp.id VT0 _chem_comp.name "{[(2-phenylthieno[2,3-d]pyrimidin-4-yl)amino]methylene}bis(phosphonic acid)" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C13 H13 N3 O6 P2 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2018-01-16 _chem_comp.pdbx_modified_date 2018-08-31 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 401.271 _chem_comp.one_letter_code ? _chem_comp.three_letter_code VT0 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 6C56 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal VT0 OAO O1 O 0 1 N N N -66.555 26.138 -30.789 2.615 -2.505 -0.973 OAO VT0 1 VT0 PAL P1 P 0 1 N N N -65.203 25.966 -29.927 1.895 -1.224 -1.145 PAL VT0 2 VT0 OAP O2 O 0 1 N N N -65.350 24.633 -28.972 2.622 -0.348 -2.283 OAP VT0 3 VT0 OAN O3 O 0 1 N N N -63.983 25.957 -30.791 0.374 -1.518 -1.585 OAN VT0 4 VT0 CAK C1 C 0 1 N N N -65.136 27.379 -28.786 1.905 -0.304 0.429 CAK VT0 5 VT0 PAM P2 P 0 1 N N N -66.599 27.337 -27.656 3.626 0.029 0.926 PAM VT0 6 VT0 OAR O4 O 0 1 N N N -67.910 27.336 -28.636 3.635 0.776 2.204 OAR VT0 7 VT0 OAS O5 O 0 1 N N N -66.472 28.792 -26.915 4.410 -1.365 1.114 OAS VT0 8 VT0 OAQ O6 O 0 1 N N N -66.506 26.203 -26.707 4.354 0.905 -0.212 OAQ VT0 9 VT0 NAJ N1 N 0 1 N N N -65.001 28.661 -29.537 1.191 0.964 0.258 NAJ VT0 10 VT0 C4 C2 C 0 1 Y N N -63.897 29.353 -29.212 -0.190 0.976 0.188 C4 VT0 11 VT0 N3 N2 N 0 1 Y N N -62.945 28.741 -28.497 -0.876 -0.151 0.274 N3 VT0 12 VT0 C5 C3 C 0 1 Y N N -63.768 30.615 -29.577 -0.892 2.201 0.028 C5 VT0 13 VT0 CAC C4 C 0 1 Y N N -64.635 31.350 -30.302 -0.397 3.559 -0.086 CAC VT0 14 VT0 CAD C5 C 0 1 Y N N -64.193 32.593 -30.513 -1.332 4.479 -0.226 CAD VT0 15 VT0 SAE S1 S 0 1 Y N N -62.693 32.719 -29.747 -2.934 3.768 -0.233 SAE VT0 16 VT0 C6 C6 C 0 1 Y N N -62.632 31.256 -29.201 -2.288 2.145 -0.036 C6 VT0 17 VT0 N1 N3 N 0 1 Y N N -61.668 30.658 -28.497 -2.899 0.959 0.055 N1 VT0 18 VT0 C2 C7 C 0 1 Y N N -61.831 29.372 -28.154 -2.204 -0.154 0.208 C2 VT0 19 VT0 CAT C8 C 0 1 Y N N -60.925 28.666 -27.365 -2.927 -1.444 0.310 CAT VT0 20 VT0 CAU C9 C 0 1 Y N N -61.279 27.407 -26.836 -4.319 -1.474 0.244 CAU VT0 21 VT0 CAV C10 C 0 1 Y N N -60.400 26.702 -26.014 -4.986 -2.678 0.339 CAV VT0 22 VT0 CAW C11 C 0 1 Y N N -59.180 27.297 -25.696 -4.276 -3.855 0.500 CAW VT0 23 VT0 CAX C12 C 0 1 Y N N -58.832 28.551 -26.208 -2.894 -3.831 0.566 CAX VT0 24 VT0 CAY C13 C 0 1 Y N N -59.705 29.241 -27.034 -2.216 -2.634 0.466 CAY VT0 25 VT0 H1 H1 H 0 1 N N N -66.198 24.231 -29.117 2.654 -0.776 -3.150 H1 VT0 26 VT0 H2 H2 H 0 1 N N N -64.238 26.056 -31.701 -0.159 -0.722 -1.716 H2 VT0 27 VT0 H3 H3 H 0 1 N N N -64.254 27.221 -28.148 1.412 -0.897 1.199 H3 VT0 28 VT0 H4 H4 H 0 1 N N N -67.184 29.355 -27.197 5.335 -1.263 1.379 H4 VT0 29 VT0 H5 H5 H 0 1 N N N -67.255 25.630 -26.823 4.385 0.477 -1.078 H5 VT0 30 VT0 H6 H6 H 0 1 N N N -64.970 28.454 -30.515 1.688 1.795 0.194 H6 VT0 31 VT0 H8 H8 H 0 1 N N N -65.579 30.977 -30.670 0.656 3.798 -0.058 H8 VT0 32 VT0 H9 H9 H 0 1 N N N -64.699 33.369 -31.068 -1.135 5.537 -0.325 H9 VT0 33 VT0 H12 H12 H 0 1 N N N -62.244 26.983 -27.071 -4.874 -0.556 0.119 H12 VT0 34 VT0 H13 H13 H 0 1 N N N -60.657 25.724 -25.635 -6.064 -2.703 0.288 H13 VT0 35 VT0 H14 H14 H 0 1 N N N -58.492 26.781 -25.043 -4.802 -4.795 0.574 H14 VT0 36 VT0 H15 H15 H 0 1 N N N -57.875 28.985 -25.958 -2.345 -4.753 0.691 H15 VT0 37 VT0 H16 H16 H 0 1 N N N -59.439 30.216 -27.416 -1.137 -2.617 0.513 H16 VT0 38 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal VT0 OAO PAL DOUB N N 1 VT0 PAL OAP SING N N 2 VT0 PAL OAN SING N N 3 VT0 PAL CAK SING N N 4 VT0 CAK PAM SING N N 5 VT0 CAK NAJ SING N N 6 VT0 PAM OAR DOUB N N 7 VT0 PAM OAS SING N N 8 VT0 PAM OAQ SING N N 9 VT0 NAJ C4 SING N N 10 VT0 C4 N3 DOUB Y N 11 VT0 C4 C5 SING Y N 12 VT0 N3 C2 SING Y N 13 VT0 C5 CAC SING Y N 14 VT0 C5 C6 DOUB Y N 15 VT0 CAC CAD DOUB Y N 16 VT0 CAD SAE SING Y N 17 VT0 SAE C6 SING Y N 18 VT0 C6 N1 SING Y N 19 VT0 N1 C2 DOUB Y N 20 VT0 C2 CAT SING N N 21 VT0 CAT CAU DOUB Y N 22 VT0 CAT CAY SING Y N 23 VT0 CAU CAV SING Y N 24 VT0 CAV CAW DOUB Y N 25 VT0 CAW CAX SING Y N 26 VT0 CAX CAY DOUB Y N 27 VT0 OAP H1 SING N N 28 VT0 OAN H2 SING N N 29 VT0 CAK H3 SING N N 30 VT0 OAS H4 SING N N 31 VT0 OAQ H5 SING N N 32 VT0 NAJ H6 SING N N 33 VT0 CAC H8 SING N N 34 VT0 CAD H9 SING N N 35 VT0 CAU H12 SING N N 36 VT0 CAV H13 SING N N 37 VT0 CAW H14 SING N N 38 VT0 CAX H15 SING N N 39 VT0 CAY H16 SING N N 40 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor VT0 SMILES ACDLabs 12.01 "O=P(O)(O)C(P(=O)(O)O)Nc1nc(nc2c1ccs2)c3ccccc3" VT0 InChI InChI 1.03 "InChI=1S/C13H13N3O6P2S/c17-23(18,19)13(24(20,21)22)16-11-9-6-7-25-12(9)15-10(14-11)8-4-2-1-3-5-8/h1-7,13H,(H,14,15,16)(H2,17,18,19)(H2,20,21,22)" VT0 InChIKey InChI 1.03 OVNNLIKSDUSVRR-UHFFFAOYSA-N VT0 SMILES_CANONICAL CACTVS 3.385 "O[P](O)(=O)C(Nc1nc(nc2sccc12)c3ccccc3)[P](O)(O)=O" VT0 SMILES CACTVS 3.385 "O[P](O)(=O)C(Nc1nc(nc2sccc12)c3ccccc3)[P](O)(O)=O" VT0 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "c1ccc(cc1)c2nc(c3ccsc3n2)NC(P(=O)(O)O)P(=O)(O)O" VT0 SMILES "OpenEye OEToolkits" 2.0.6 "c1ccc(cc1)c2nc(c3ccsc3n2)NC(P(=O)(O)O)P(=O)(O)O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier VT0 "SYSTEMATIC NAME" ACDLabs 12.01 "{[(2-phenylthieno[2,3-d]pyrimidin-4-yl)amino]methylene}bis(phosphonic acid)" VT0 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.6 "[[(2-phenylthieno[2,3-d]pyrimidin-4-yl)amino]-phosphono-methyl]phosphonic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site VT0 "Create component" 2018-01-16 RCSB VT0 "Initial release" 2018-09-05 RCSB #