data_VTB # _chem_comp.id VTB _chem_comp.name 7-O-phosphono-alpha-L-galacto-hept-2-ulopyranose _chem_comp.type "L-saccharide, alpha linking" _chem_comp.pdbx_type ATOMS _chem_comp.formula "C7 H15 O10 P" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ;[(2~{S},3~{S},4~{R},5~{S},6~{R})-6-(hydroxymethyl)-3,4,5,6-tetrakis(oxidanyl)oxan-2-yl]methyl dihydrogen phosphate; 7-O-phosphono-alpha-L-galacto-hept-2-ulose; 7-O-phosphono-L-galacto-hept-2-ulose; 7-O-phosphono-galacto-hept-2-ulose ; _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2015-06-19 _chem_comp.pdbx_modified_date 2020-07-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 290.162 _chem_comp.one_letter_code ? _chem_comp.three_letter_code VTB _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 5A5L _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _pdbx_chem_comp_synonyms.ordinal _pdbx_chem_comp_synonyms.comp_id _pdbx_chem_comp_synonyms.name _pdbx_chem_comp_synonyms.provenance _pdbx_chem_comp_synonyms.type 1 VTB "[(2~{S},3~{S},4~{R},5~{S},6~{R})-6-(hydroxymethyl)-3,4,5,6-tetrakis(oxidanyl)oxan-2-yl]methyl dihydrogen phosphate" PDB ? 2 VTB 7-O-phosphono-alpha-L-galacto-hept-2-ulose PDB ? 3 VTB 7-O-phosphono-L-galacto-hept-2-ulose PDB ? 4 VTB 7-O-phosphono-galacto-hept-2-ulose PDB ? # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal VTB C1 C1 C 0 1 N N S 11.312 -28.079 30.641 -1.218 -1.748 -0.128 C1 VTB 1 VTB C2 C2 C 0 1 N N R 9.885 -27.471 30.731 -2.641 -1.327 -0.510 C2 VTB 2 VTB C3 C3 C 0 1 N N S 9.239 -27.398 32.130 -3.009 -0.055 0.259 C3 VTB 3 VTB O4 O4 O 0 1 N N N 10.654 -29.151 32.720 -0.674 0.567 0.300 O4 VTB 4 VTB O6 O6 O 0 1 N N N 11.686 -28.695 29.405 -1.171 -2.066 1.264 O6 VTB 5 VTB C7 C7 C 0 1 N N S 11.717 -29.032 31.749 -0.257 -0.593 -0.422 C7 VTB 6 VTB O8 O8 O 0 1 N N N 8.970 -28.089 29.829 -3.555 -2.372 -0.171 O8 VTB 7 VTB C10 C10 C 0 1 N N N 12.230 -30.338 31.103 1.158 -0.984 0.012 C10 VTB 8 VTB O12 O12 O 0 1 N N N 13.621 -30.278 30.712 2.073 0.045 -0.367 O12 VTB 9 VTB O15 O15 O 0 1 N N N 8.788 -26.060 32.421 -4.306 0.388 -0.143 O15 VTB 10 VTB P15 P15 P 0 1 N N N 14.710 -31.115 31.571 3.653 -0.032 -0.067 P15 VTB 11 VTB O16 O16 O 0 1 N N N 16.224 -30.957 31.091 4.201 -1.287 -0.630 O16 VTB 12 VTB O17 O17 O 0 1 N N N 14.340 -32.683 31.544 4.391 1.228 -0.746 O17 VTB 13 VTB O18 O18 O 0 1 N N N 14.599 -30.612 33.104 3.899 -0.005 1.524 O18 VTB 14 VTB C20 C20 C 0 1 N N R 10.196 -27.876 33.204 -1.978 1.035 -0.049 C20 VTB 15 VTB O20 O20 O 0 1 N N N 11.239 -26.905 33.357 -2.016 1.344 -1.444 O20 VTB 16 VTB C21 C21 C 0 1 N N N 9.581 -27.912 34.609 -2.305 2.290 0.761 C21 VTB 17 VTB O22 O22 O 0 1 N N N 8.679 -28.992 34.827 -1.343 3.307 0.473 O22 VTB 18 VTB H1 H1 H 0 1 N N N 11.984 -27.216 30.756 -0.927 -2.621 -0.712 H1 VTB 19 VTB H2 H2 H 0 1 N N N 9.994 -26.426 30.405 -2.688 -1.133 -1.581 H2 VTB 20 VTB H3 H3 H 0 1 N N N 8.370 -28.072 32.129 -3.010 -0.263 1.329 H3 VTB 21 VTB H4 H4 H 0 1 N N N 12.574 -29.027 29.472 -1.761 -2.787 1.523 H4 VTB 22 VTB H5 H5 H 0 1 N N N 12.580 -28.577 32.257 -0.263 -0.378 -1.491 H5 VTB 23 VTB H6 H6 H 0 1 N N N 8.114 -27.686 29.920 -3.377 -3.211 -0.617 H6 VTB 24 VTB H7 H7 H 0 1 N N N 11.625 -30.545 30.208 1.183 -1.112 1.094 H7 VTB 25 VTB H8 H8 H 0 1 N N N 12.106 -31.157 31.827 1.441 -1.919 -0.471 H8 VTB 26 VTB H9 H9 H 0 1 N N N 8.395 -26.039 33.285 -5.009 -0.256 0.019 H9 VTB 27 VTB H10 H10 H 0 1 N N N 15.094 -33.182 31.251 5.348 1.246 -0.605 H10 VTB 28 VTB H11 H11 H 0 1 N N N 15.453 -30.326 33.407 3.565 0.790 1.960 H11 VTB 29 VTB H12 H12 H 0 1 N N N 11.846 -27.194 34.028 -1.387 2.029 -1.712 H12 VTB 30 VTB H13 H13 H 0 1 N N N 10.398 -27.993 35.341 -3.300 2.646 0.495 H13 VTB 31 VTB H14 H14 H 0 1 N N N 9.036 -26.970 34.771 -2.275 2.054 1.825 H14 VTB 32 VTB H15 H15 H 0 1 N N N 8.341 -28.949 35.714 -1.488 4.134 0.953 H15 VTB 33 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal VTB O6 C1 SING N N 1 VTB O8 C2 SING N N 2 VTB C1 C2 SING N N 3 VTB C1 C7 SING N N 4 VTB O12 C10 SING N N 5 VTB O12 P15 SING N N 6 VTB C2 C3 SING N N 7 VTB O16 P15 DOUB N N 8 VTB C10 C7 SING N N 9 VTB O17 P15 SING N N 10 VTB P15 O18 SING N N 11 VTB C7 O4 SING N N 12 VTB C3 O15 SING N N 13 VTB C3 C20 SING N N 14 VTB O4 C20 SING N N 15 VTB C20 O20 SING N N 16 VTB C20 C21 SING N N 17 VTB C21 O22 SING N N 18 VTB C1 H1 SING N N 19 VTB C2 H2 SING N N 20 VTB C3 H3 SING N N 21 VTB O6 H4 SING N N 22 VTB C7 H5 SING N N 23 VTB O8 H6 SING N N 24 VTB C10 H7 SING N N 25 VTB C10 H8 SING N N 26 VTB O15 H9 SING N N 27 VTB O17 H10 SING N N 28 VTB O18 H11 SING N N 29 VTB O20 H12 SING N N 30 VTB C21 H13 SING N N 31 VTB C21 H14 SING N N 32 VTB O22 H15 SING N N 33 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor VTB InChI InChI 1.03 "InChI=1S/C7H15O10P/c8-2-7(12)6(11)5(10)4(9)3(17-7)1-16-18(13,14)15/h3-6,8-12H,1-2H2,(H2,13,14,15)/t3-,4+,5+,6-,7+/m0/s1" VTB InChIKey InChI 1.03 CBIDVWSRUUODHL-CXNFULCWSA-N VTB SMILES_CANONICAL CACTVS 3.385 "OC[C@@]1(O)O[C@@H](CO[P](O)(O)=O)[C@@H](O)[C@@H](O)[C@@H]1O" VTB SMILES CACTVS 3.385 "OC[C]1(O)O[CH](CO[P](O)(O)=O)[CH](O)[CH](O)[CH]1O" VTB SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "C([C@H]1[C@H]([C@H]([C@@H]([C@](O1)(CO)O)O)O)O)OP(=O)(O)O" VTB SMILES "OpenEye OEToolkits" 2.0.6 "C(C1C(C(C(C(O1)(CO)O)O)O)O)OP(=O)(O)O" # _pdbx_chem_comp_identifier.comp_id VTB _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.6 _pdbx_chem_comp_identifier.identifier "[(2~{S},3~{S},4~{R},5~{S},6~{R})-6-(hydroxymethyl)-3,4,5,6-tetrakis(oxidanyl)oxan-2-yl]methyl dihydrogen phosphate" # # loop_ _pdbx_chem_comp_feature.comp_id _pdbx_chem_comp_feature.type _pdbx_chem_comp_feature.value _pdbx_chem_comp_feature.source _pdbx_chem_comp_feature.support VTB "CARBOHYDRATE ISOMER" L PDB ? VTB "CARBOHYDRATE RING" pyranose PDB ? VTB "CARBOHYDRATE ANOMER" alpha PDB ? VTB "CARBOHYDRATE PRIMARY CARBONYL GROUP" ketose PDB ? # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site VTB "Create component" 2015-06-19 EBI VTB "Initial release" 2015-10-14 RCSB VTB "Modify name" 2018-11-12 EBI VTB "Other modification" 2020-07-03 RCSB VTB "Modify name" 2020-07-17 RCSB VTB "Modify synonyms" 2020-07-17 RCSB VTB "Modify internal type" 2020-07-17 RCSB VTB "Modify linking type" 2020-07-17 RCSB ##