data_VTE
#
_chem_comp.id VTE
_chem_comp.name "~{N}-(2-pyrrolidin-1-ylethyl)-2-[3,4,5-tris(oxidanyl)phenyl]carbonyl-1-benzofuran-5-carboxamide"
_chem_comp.type non-polymer
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C22 H22 N2 O6"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2023-03-31
_chem_comp.pdbx_modified_date 2024-06-14
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 410.420
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code VTE
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 8OLZ
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site PDBE
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
VTE C10 C1 C 0 1 N N N N N N 27.742 24.448 39.849 -8.797 1.722 -0.626 C10 VTE 1
VTE C13 C2 C 0 1 Y N N N N N 27.814 27.850 37.328 -0.205 0.916 -0.228 C13 VTE 2
VTE C17 C3 C 0 1 N N N N N N 25.670 24.244 34.300 4.044 -1.637 -0.045 C17 VTE 3
VTE C20 C4 C 0 1 Y N N N N N 25.676 21.822 33.713 6.403 -0.874 0.190 C20 VTE 4
VTE C21 C5 C 0 1 Y N N N N N 25.808 20.513 34.132 7.343 0.136 0.257 C21 VTE 5
VTE C28 C6 C 0 1 Y N N N N N 27.854 24.742 35.499 1.600 -2.210 -0.046 C28 VTE 6
VTE O01 O1 O 0 1 N N N N N N 32.067 27.892 38.301 -3.735 -2.240 -0.097 O01 VTE 7
VTE C02 C7 C 0 1 N N N N N N 31.425 26.970 38.393 -3.380 -1.079 -0.158 C02 VTE 8
VTE N03 N1 N 0 1 N N N N N N 31.955 25.786 39.203 -4.299 -0.095 -0.225 N03 VTE 9
VTE C04 C8 C 0 1 N N N N N N 31.262 24.525 39.411 -5.726 -0.425 -0.225 C04 VTE 10
VTE C05 C9 C 0 1 N N N N N N 29.859 24.652 40.067 -6.547 0.863 -0.308 C05 VTE 11
VTE N06 N2 N 0 1 N N N N N N 29.156 24.063 39.516 -7.978 0.533 -0.308 N06 VTE 12
VTE C07 C10 C 0 1 N N N N N N 29.277 22.599 39.907 -8.421 0.084 1.036 C07 VTE 13
VTE C08 C11 C 0 1 N N N N N N 28.092 22.215 40.336 -9.955 0.294 0.993 C08 VTE 14
VTE C09 C12 C 0 1 N N N N N N 27.076 23.305 39.869 -10.103 1.601 0.182 C09 VTE 15
VTE C11 C13 C 0 1 Y N N N N N 30.022 26.911 37.729 -1.941 -0.747 -0.158 C11 VTE 16
VTE C12 C14 C 0 1 Y N N N N N 29.045 27.943 37.918 -1.530 0.592 -0.228 C12 VTE 17
VTE C14 C15 C 0 1 Y N N N N N 27.474 26.673 36.486 0.763 -0.082 -0.165 C14 VTE 18
VTE O15 O2 O 0 1 Y N N N N N 26.344 26.310 35.781 2.109 -0.056 -0.150 O15 VTE 19
VTE C16 C16 C 0 1 Y N N N N N 26.573 25.152 35.171 2.615 -1.305 -0.080 C16 VTE 20
VTE O18 O3 O 0 1 N N N N N N 24.955 24.486 33.363 4.400 -2.801 -0.076 O18 VTE 21
VTE C19 C17 C 0 1 Y N N N N N 25.777 22.819 34.704 5.051 -0.560 0.028 C19 VTE 22
VTE O22 O4 O 0 1 N N N N N N 25.719 19.443 33.227 8.659 -0.169 0.414 O22 VTE 23
VTE C23 C18 C 0 1 Y N N N N N 25.998 20.269 35.500 6.944 1.467 0.164 C23 VTE 24
VTE O24 O5 O 0 1 N N N N N N 26.194 18.907 35.881 7.870 2.459 0.231 O24 VTE 25
VTE C25 C19 C 0 1 Y N N N N N 26.142 21.225 36.442 5.597 1.784 0.004 C25 VTE 26
VTE O26 O6 O 0 1 N N N N N N 26.387 20.908 37.836 5.211 3.085 -0.088 O26 VTE 27
VTE C27 C20 C 0 1 Y N N N N N 25.996 22.585 36.017 4.653 0.777 -0.065 C27 VTE 28
VTE C29 C21 C 0 1 Y N N N N N 28.407 25.706 36.323 0.363 -1.432 -0.101 C29 VTE 29
VTE C30 C22 C 0 1 Y N N N N N 29.703 25.800 36.930 -0.992 -1.762 -0.100 C30 VTE 30
VTE H1 H1 H 0 1 N N N N N N 27.696 24.941 40.831 -8.264 2.628 -0.337 H1 VTE 31
VTE H2 H2 H 0 1 N N N N N N 27.333 25.121 39.081 -9.021 1.748 -1.693 H2 VTE 32
VTE H3 H3 H 0 1 N N N N N N 27.087 28.635 37.475 0.094 1.952 -0.282 H3 VTE 33
VTE H4 H4 H 0 1 N N N N N N 25.504 22.070 32.676 6.713 -1.907 0.257 H4 VTE 34
VTE H5 H5 H 0 1 N N N N N N 28.335 23.833 35.171 1.690 -3.285 0.010 H5 VTE 35
VTE H6 H6 H 0 1 N N N N N N 32.855 25.888 39.626 -4.015 0.831 -0.274 H6 VTE 36
VTE H7 H7 H 0 1 N N N N N N 31.139 24.037 38.433 -5.953 -1.057 -1.084 H7 VTE 37
VTE H8 H8 H 0 1 N N N N N N 31.887 23.894 40.060 -5.976 -0.957 0.693 H8 VTE 38
VTE H9 H9 H 0 1 N N N N N N 29.905 24.293 41.106 -6.320 1.495 0.550 H9 VTE 39
VTE H10 H10 H 0 1 N N N N N N 29.543 25.706 40.057 -6.297 1.395 -1.227 H10 VTE 40
VTE H12 H12 H 0 1 N N N N N N 29.576 21.999 39.035 -8.181 -0.969 1.189 H12 VTE 41
VTE H13 H13 H 0 1 N N N N N N 30.024 22.482 40.706 -7.970 0.699 1.815 H13 VTE 42
VTE H14 H14 H 0 1 N N N N N N 28.091 22.140 41.433 -10.444 -0.535 0.481 H14 VTE 43
VTE H15 H15 H 0 1 N N N N N N 27.829 21.239 39.902 -10.357 0.413 1.999 H15 VTE 44
VTE H16 H16 H 0 1 N N N N N N 26.233 23.367 40.573 -10.213 2.453 0.853 H16 VTE 45
VTE H17 H17 H 0 1 N N N N N N 26.697 23.067 38.864 -10.959 1.535 -0.490 H17 VTE 46
VTE H18 H18 H 0 1 N N N N N N 29.282 28.800 38.531 -2.272 1.376 -0.282 H18 VTE 47
VTE H19 H19 H 0 1 N N N N N N 25.834 18.623 33.693 9.137 -0.289 -0.417 H19 VTE 48
VTE H20 H20 H 0 1 N N N N N N 26.312 18.855 36.822 8.236 2.714 -0.627 H20 VTE 49
VTE H21 H21 H 0 1 N N N N N N 26.458 21.712 38.336 5.196 3.428 -0.992 H21 VTE 50
VTE H22 H22 H 0 1 N N N N N N 26.059 23.399 36.724 3.609 1.023 -0.189 H22 VTE 51
VTE H23 H23 H 0 1 N N N N N N 30.432 25.019 36.773 -1.301 -2.796 -0.050 H23 VTE 52
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
VTE O22 C21 SING N N 1
VTE O18 C17 DOUB N N 2
VTE C20 C21 DOUB Y N 3
VTE C20 C19 SING Y N 4
VTE C21 C23 SING Y N 5
VTE C17 C19 SING N N 6
VTE C17 C16 SING N N 7
VTE C19 C27 DOUB Y N 8
VTE C16 C28 DOUB Y N 9
VTE C16 O15 SING Y N 10
VTE C28 C29 SING Y N 11
VTE C23 O24 SING N N 12
VTE C23 C25 DOUB Y N 13
VTE O15 C14 SING Y N 14
VTE C27 C25 SING Y N 15
VTE C29 C14 DOUB Y N 16
VTE C29 C30 SING Y N 17
VTE C25 O26 SING N N 18
VTE C14 C13 SING Y N 19
VTE C30 C11 DOUB Y N 20
VTE C13 C12 DOUB Y N 21
VTE C11 C12 SING Y N 22
VTE C11 C02 SING N N 23
VTE O01 C02 DOUB N N 24
VTE C02 N03 SING N N 25
VTE N03 C04 SING N N 26
VTE C04 C05 SING N N 27
VTE N06 C10 SING N N 28
VTE N06 C07 SING N N 29
VTE N06 C05 SING N N 30
VTE C10 C09 SING N N 31
VTE C09 C08 SING N N 32
VTE C07 C08 SING N N 33
VTE C10 H1 SING N N 34
VTE C10 H2 SING N N 35
VTE C13 H3 SING N N 36
VTE C20 H4 SING N N 37
VTE C28 H5 SING N N 38
VTE N03 H6 SING N N 39
VTE C04 H7 SING N N 40
VTE C04 H8 SING N N 41
VTE C05 H9 SING N N 42
VTE C05 H10 SING N N 43
VTE C07 H12 SING N N 44
VTE C07 H13 SING N N 45
VTE C08 H14 SING N N 46
VTE C08 H15 SING N N 47
VTE C09 H16 SING N N 48
VTE C09 H17 SING N N 49
VTE C12 H18 SING N N 50
VTE O22 H19 SING N N 51
VTE O24 H20 SING N N 52
VTE O26 H21 SING N N 53
VTE C27 H22 SING N N 54
VTE C30 H23 SING N N 55
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
VTE InChI InChI 1.06 "InChI=1S/C22H22N2O6/c25-16-10-15(11-17(26)21(16)28)20(27)19-12-14-9-13(3-4-18(14)30-19)22(29)23-5-8-24-6-1-2-7-24/h3-4,9-12,25-26,28H,1-2,5-8H2,(H,23,29)"
VTE InChIKey InChI 1.06 FQUBMOYVKLVEKR-UHFFFAOYSA-N
VTE SMILES_CANONICAL CACTVS 3.385 "Oc1cc(cc(O)c1O)C(=O)c2oc3ccc(cc3c2)C(=O)NCCN4CCCC4"
VTE SMILES CACTVS 3.385 "Oc1cc(cc(O)c1O)C(=O)c2oc3ccc(cc3c2)C(=O)NCCN4CCCC4"
VTE SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1cc2c(cc1C(=O)NCCN3CCCC3)cc(o2)C(=O)c4cc(c(c(c4)O)O)O"
VTE SMILES "OpenEye OEToolkits" 2.0.7 "c1cc2c(cc1C(=O)NCCN3CCCC3)cc(o2)C(=O)c4cc(c(c(c4)O)O)O"
#
_pdbx_chem_comp_identifier.comp_id VTE
_pdbx_chem_comp_identifier.type "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version 2.0.7
_pdbx_chem_comp_identifier.identifier "~{N}-(2-pyrrolidin-1-ylethyl)-2-[3,4,5-tris(oxidanyl)phenyl]carbonyl-1-benzofuran-5-carboxamide"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
VTE "Create component" 2023-03-31 PDBE
VTE "Initial release" 2024-06-19 RCSB
#