data_VTF # _chem_comp.id VTF _chem_comp.name "~{N}-[4-[4-(4-cyano-6-methyl-pyrimidin-2-yl)piperazin-1-yl]sulfonylphenyl]-2-[methyl(methylsulfonyl)amino]benzamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C25 H27 N7 O5 S2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-09-18 _chem_comp.pdbx_modified_date 2024-04-12 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 569.656 _chem_comp.one_letter_code ? _chem_comp.three_letter_code VTF _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8QK2 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal VTF C5 C1 C 0 1 Y N N N N N 5.648 7.765 5.539 8.911 -1.555 0.397 C5 VTF 1 VTF C6 C2 C 0 1 Y N N N N N 4.800 6.817 5.007 9.528 -0.425 0.910 C6 VTF 2 VTF N7 N1 N 0 1 N N N N N N 3.991 10.816 4.593 5.506 -0.521 0.307 N7 VTF 3 VTF C8 C3 C 0 1 N N N N N N 5.144 11.675 4.669 4.879 0.749 0.698 C8 VTF 4 VTF C9 C4 C 0 1 N N N N N N 4.648 13.009 5.218 3.355 0.607 0.627 C9 VTF 5 VTF C10 C5 C 0 1 N N N N N N 3.115 11.221 3.531 5.193 -0.863 -1.087 C10 VTF 6 VTF C11 C6 C 0 1 N N N N N N 2.505 12.580 3.960 3.681 -1.071 -1.231 C11 VTF 7 VTF C1 C7 C 0 1 Y N N N N N 3.654 7.244 4.329 8.735 0.685 1.216 C1 VTF 8 VTF N2 N2 N 0 1 Y N N N N N 3.412 8.555 4.178 7.422 0.616 1.005 N2 VTF 9 VTF C3 C8 C 0 1 Y N N N N N 4.307 9.460 4.623 6.874 -0.483 0.514 C3 VTF 10 VTF N4 N3 N 0 1 Y N N N N N 5.375 9.068 5.353 7.602 -1.548 0.209 N4 VTF 11 VTF N12 N4 N 0 1 N N N N N N 3.620 13.573 4.300 2.994 0.121 -0.714 N12 VTF 12 VTF S13 S1 S 0 1 N N N N N N 3.010 15.001 4.905 1.842 0.897 -1.616 S13 VTF 13 VTF C14 C9 C 0 1 Y N N N N N 2.027 14.704 6.340 0.289 0.162 -1.224 C14 VTF 14 VTF O15 O1 O 0 1 N N N N N N 4.124 15.871 5.211 1.787 2.233 -1.134 O15 VTF 15 VTF O16 O2 O 0 1 N N N N N N 2.205 15.571 3.901 2.109 0.571 -2.973 O16 VTF 16 VTF C17 C10 C 0 1 Y N N N N N 0.721 14.336 6.172 -0.161 -0.927 -1.949 C17 VTF 17 VTF C18 C11 C 0 1 Y N N N N N -0.074 14.063 7.257 -1.378 -1.505 -1.644 C18 VTF 18 VTF C19 C12 C 0 1 Y N N N N N 0.403 14.183 8.552 -2.148 -0.993 -0.608 C19 VTF 19 VTF C20 C13 C 0 1 Y N N N N N 2.560 14.831 7.656 -0.473 0.670 -0.189 C20 VTF 20 VTF C21 C14 C 0 1 Y N N N N N 1.735 14.556 8.771 -1.692 0.100 0.118 C21 VTF 21 VTF N22 N5 N 0 1 N N N N N N -0.467 13.828 9.601 -3.381 -1.577 -0.297 N22 VTF 22 VTF C23 C15 C 0 1 N N N N N N -0.300 14.148 10.921 -4.393 -0.811 0.156 C23 VTF 23 VTF O24 O3 O 0 1 N N N N N N 0.649 14.825 11.305 -4.268 0.398 0.203 O24 VTF 24 VTF C25 C16 C 0 1 Y N N N N N -1.358 13.669 11.901 -5.653 -1.439 0.594 C25 VTF 25 VTF C26 C17 C 0 1 Y N N N N N -1.817 12.354 11.821 -5.800 -2.828 0.547 C26 VTF 26 VTF C27 C18 C 0 1 Y N N N N N -2.800 11.905 12.686 -6.980 -3.408 0.958 C27 VTF 27 VTF C28 C19 C 0 1 Y N N N N N -3.365 12.775 13.611 -8.024 -2.623 1.419 C28 VTF 28 VTF C29 C20 C 0 1 Y N N N N N -2.932 14.095 13.689 -7.895 -1.250 1.471 C29 VTF 29 VTF C30 C21 C 0 1 Y N N N N N -1.949 14.558 12.817 -6.711 -0.646 1.066 C30 VTF 30 VTF N31 N6 N 0 1 N N N N N N -1.456 15.929 12.928 -6.576 0.735 1.123 N31 VTF 31 VTF C32 C22 C 0 1 N N N N N N -1.606 16.435 14.311 -6.153 1.379 2.368 C32 VTF 32 VTF S33 S2 S 0 1 N N N N N N -2.206 16.910 11.871 -6.895 1.654 -0.218 S33 VTF 33 VTF C34 C23 C 0 1 N N N N N N -3.874 17.222 12.424 -8.661 2.048 -0.087 C34 VTF 34 VTF O35 O4 O 0 1 N N N N N N -1.482 18.143 11.779 -6.109 2.823 -0.036 O35 VTF 35 VTF O36 O5 O 0 1 N N N N N N -2.231 16.302 10.604 -6.660 0.775 -1.309 O36 VTF 36 VTF C37 C24 C 0 1 N N N N N N 6.902 7.359 6.311 9.724 -2.776 0.051 C37 VTF 37 VTF C38 C25 C 0 1 N N N N N N 2.753 6.302 3.773 9.325 1.876 1.748 C38 VTF 38 VTF N39 N7 N 0 1 N N N N N N 2.019 5.573 3.319 9.793 2.821 2.170 N39 VTF 39 VTF H1 H1 H 0 1 N N N N N N 5.017 5.764 5.112 10.595 -0.402 1.069 H1 VTF 40 VTF H2 H2 H 0 1 N N N N N N 5.898 11.242 5.343 5.174 1.002 1.717 H2 VTF 41 VTF H3 H3 H 0 1 N N N N N N 5.582 11.814 3.670 5.203 1.538 0.019 H3 VTF 42 VTF H4 H4 H 0 1 N N N N N N 5.492 13.709 5.297 3.019 -0.108 1.378 H4 VTF 43 VTF H5 H5 H 0 1 N N N N N N 4.205 12.854 6.213 2.888 1.575 0.807 H5 VTF 44 VTF H6 H6 H 0 1 N N N N N N 2.319 10.475 3.389 5.512 -0.051 -1.741 H6 VTF 45 VTF H7 H7 H 0 1 N N N N N N 3.681 11.337 2.595 5.714 -1.779 -1.362 H7 VTF 46 VTF H8 H8 H 0 1 N N N N N N 1.898 12.983 3.136 3.430 -1.212 -2.282 H8 VTF 47 VTF H9 H9 H 0 1 N N N N N N 1.869 12.430 4.845 3.376 -1.947 -0.658 H9 VTF 48 VTF H10 H10 H 0 1 N N N N N N 0.311 14.259 5.176 0.439 -1.324 -2.754 H10 VTF 49 VTF H11 H11 H 0 1 N N N N N N -1.095 13.747 7.098 -1.729 -2.355 -2.210 H11 VTF 50 VTF H12 H12 H 0 1 N N N N N N 3.586 15.135 7.800 -0.116 1.518 0.378 H12 VTF 51 VTF H13 H13 H 0 1 N N N N N N 2.126 14.632 9.775 -2.289 0.500 0.924 H13 VTF 52 VTF H14 H14 H 0 1 N N N N N N -1.278 13.295 9.360 -3.507 -2.532 -0.407 H14 VTF 53 VTF H15 H15 H 0 1 N N N N N N -1.404 11.684 11.082 -4.989 -3.445 0.189 H15 VTF 54 VTF H16 H16 H 0 1 N N N N N N -3.128 10.877 12.642 -7.091 -4.482 0.921 H16 VTF 55 VTF H17 H17 H 0 1 N N N N N N -4.144 12.425 14.272 -8.945 -3.087 1.739 H17 VTF 56 VTF H18 H18 H 0 1 N N N N N N -3.358 14.761 14.425 -8.713 -0.644 1.831 H18 VTF 57 VTF H19 H19 H 0 1 N N N N N N -1.092 15.757 15.008 -5.066 1.456 2.387 H19 VTF 58 VTF H20 H20 H 0 1 N N N N N N -1.164 17.440 14.384 -6.588 2.377 2.428 H20 VTF 59 VTF H21 H21 H 0 1 N N N N N N -2.674 16.485 14.569 -6.490 0.785 3.218 H21 VTF 60 VTF H22 H22 H 0 1 N N N N N N -3.849 17.698 13.416 -8.843 2.598 0.836 H22 VTF 61 VTF H23 H23 H 0 1 N N N N N N -4.378 17.890 11.710 -8.961 2.658 -0.939 H23 VTF 62 VTF H24 H24 H 0 1 N N N N N N -4.423 16.271 12.487 -9.240 1.124 -0.080 H24 VTF 63 VTF H25 H25 H 0 1 N N N N N N 7.445 8.261 6.630 9.786 -3.429 0.921 H25 VTF 64 VTF H26 H26 H 0 1 N N N N N N 6.614 6.773 7.196 9.247 -3.309 -0.771 H26 VTF 65 VTF H27 H27 H 0 1 N N N N N N 7.550 6.750 5.663 10.727 -2.471 -0.247 H27 VTF 66 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal VTF N39 C38 TRIP N N 1 VTF C10 C11 SING N N 2 VTF C10 N7 SING N N 3 VTF C38 C1 SING N N 4 VTF O16 S13 DOUB N N 5 VTF C11 N12 SING N N 6 VTF N2 C1 DOUB Y N 7 VTF N2 C3 SING Y N 8 VTF N12 S13 SING N N 9 VTF N12 C9 SING N N 10 VTF C1 C6 SING Y N 11 VTF N7 C3 SING N N 12 VTF N7 C8 SING N N 13 VTF C3 N4 DOUB Y N 14 VTF C8 C9 SING N N 15 VTF S13 O15 DOUB N N 16 VTF S13 C14 SING N N 17 VTF C6 C5 DOUB Y N 18 VTF N4 C5 SING Y N 19 VTF C5 C37 SING N N 20 VTF C17 C14 DOUB Y N 21 VTF C17 C18 SING Y N 22 VTF C14 C20 SING Y N 23 VTF C18 C19 DOUB Y N 24 VTF C20 C21 DOUB Y N 25 VTF C19 C21 SING Y N 26 VTF C19 N22 SING N N 27 VTF N22 C23 SING N N 28 VTF O36 S33 DOUB N N 29 VTF C23 O24 DOUB N N 30 VTF C23 C25 SING N N 31 VTF O35 S33 DOUB N N 32 VTF C26 C25 DOUB Y N 33 VTF C26 C27 SING Y N 34 VTF S33 C34 SING N N 35 VTF S33 N31 SING N N 36 VTF C25 C30 SING Y N 37 VTF C27 C28 DOUB Y N 38 VTF C30 N31 SING N N 39 VTF C30 C29 DOUB Y N 40 VTF N31 C32 SING N N 41 VTF C28 C29 SING Y N 42 VTF C6 H1 SING N N 43 VTF C8 H2 SING N N 44 VTF C8 H3 SING N N 45 VTF C9 H4 SING N N 46 VTF C9 H5 SING N N 47 VTF C10 H6 SING N N 48 VTF C10 H7 SING N N 49 VTF C11 H8 SING N N 50 VTF C11 H9 SING N N 51 VTF C17 H10 SING N N 52 VTF C18 H11 SING N N 53 VTF C20 H12 SING N N 54 VTF C21 H13 SING N N 55 VTF N22 H14 SING N N 56 VTF C26 H15 SING N N 57 VTF C27 H16 SING N N 58 VTF C28 H17 SING N N 59 VTF C29 H18 SING N N 60 VTF C32 H19 SING N N 61 VTF C32 H20 SING N N 62 VTF C32 H21 SING N N 63 VTF C34 H22 SING N N 64 VTF C34 H23 SING N N 65 VTF C34 H24 SING N N 66 VTF C37 H25 SING N N 67 VTF C37 H26 SING N N 68 VTF C37 H27 SING N N 69 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor VTF InChI InChI 1.06 "InChI=1S/C25H27N7O5S2/c1-18-16-20(17-26)29-25(27-18)31-12-14-32(15-13-31)39(36,37)21-10-8-19(9-11-21)28-24(33)22-6-4-5-7-23(22)30(2)38(3,34)35/h4-11,16H,12-15H2,1-3H3,(H,28,33)" VTF InChIKey InChI 1.06 GYNDUARBATVDGK-UHFFFAOYSA-N VTF SMILES_CANONICAL CACTVS 3.385 "CN(c1ccccc1C(=O)Nc2ccc(cc2)[S](=O)(=O)N3CCN(CC3)c4nc(C)cc(n4)C#N)[S](C)(=O)=O" VTF SMILES CACTVS 3.385 "CN(c1ccccc1C(=O)Nc2ccc(cc2)[S](=O)(=O)N3CCN(CC3)c4nc(C)cc(n4)C#N)[S](C)(=O)=O" VTF SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "Cc1cc(nc(n1)N2CCN(CC2)S(=O)(=O)c3ccc(cc3)NC(=O)c4ccccc4N(C)S(=O)(=O)C)C#N" VTF SMILES "OpenEye OEToolkits" 2.0.7 "Cc1cc(nc(n1)N2CCN(CC2)S(=O)(=O)c3ccc(cc3)NC(=O)c4ccccc4N(C)S(=O)(=O)C)C#N" # _pdbx_chem_comp_identifier.comp_id VTF _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "~{N}-[4-[4-(4-cyano-6-methyl-pyrimidin-2-yl)piperazin-1-yl]sulfonylphenyl]-2-[methyl(methylsulfonyl)amino]benzamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site VTF "Create component" 2023-09-18 PDBE VTF "Initial release" 2024-04-17 RCSB #