data_VTR
#
_chem_comp.id VTR
_chem_comp.name "2-[2,6-bis(bromanyl)-3,4,5-tris(oxidanyl)phenyl]carbonyl-~{N}-(2-pyrrolidin-1-ylethyl)-1-benzofuran-5-carboxamide"
_chem_comp.type non-polymer
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C22 H20 Br2 N2 O6"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2023-03-31
_chem_comp.pdbx_modified_date 2024-06-14
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 568.212
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code VTR
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 8OLV
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site PDBE
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
VTR C10 C1 C 0 1 Y N N N N N -33.210 22.108 -35.263 2.318 0.262 -1.575 C10 VTR 1
VTR C15 C2 C 0 1 N N N N N N -30.256 23.489 -34.225 7.916 0.234 0.969 C15 VTR 2
VTR C17 C3 C 0 1 N N N N N N -28.973 22.004 -34.981 10.176 0.482 1.838 C17 VTR 3
VTR C20 C4 C 0 1 N N N N N N -29.628 21.712 -32.759 9.807 -0.911 -0.036 C20 VTR 4
VTR C22 C5 C 0 1 Y N N N N N -35.526 22.246 -34.429 2.898 0.048 0.763 C22 VTR 5
VTR C24 C6 C 0 1 Y N N N N N -34.498 20.074 -34.969 0.596 0.006 0.121 C24 VTR 6
VTR O01 O1 O 0 1 N N N N N N -27.727 16.242 -33.690 -5.599 2.268 1.818 O01 VTR 7
VTR C02 C7 C 0 1 Y N N N N N -28.430 16.790 -34.792 -5.121 1.113 1.280 C02 VTR 8
VTR C03 C8 C 0 1 Y N N N N N -29.842 16.821 -34.856 -4.192 1.160 0.257 C03 VTR 9
VTR BR04 BR1 BR 0 0 N N N N N N -30.907 16.125 -33.442 -3.585 2.828 -0.394 BR04 VTR 10
VTR C05 C9 C 0 1 Y N N N N N -30.544 17.363 -35.990 -3.702 -0.028 -0.295 C05 VTR 11
VTR C06 C10 C 0 1 N N N N N N -32.151 17.353 -36.018 -2.711 0.018 -1.386 C06 VTR 12
VTR C07 C11 C 0 1 Y N N N N N -32.982 18.619 -35.616 -1.276 0.048 -1.074 C07 VTR 13
VTR C08 C12 C 0 1 Y N N N N N -32.378 19.837 -35.732 -0.279 0.189 -1.988 C08 VTR 14
VTR C09 C13 C 0 1 Y N N N N N -33.348 20.754 -35.317 0.971 0.165 -1.229 C09 VTR 15
VTR C11 C14 C 0 1 Y N N N N N -34.274 22.895 -34.815 3.284 0.200 -0.575 C11 VTR 16
VTR C12 C15 C 0 1 N N N N N N -33.897 24.368 -34.808 4.716 0.294 -0.925 C12 VTR 17
VTR N13 N1 N 0 1 N N N N N N -32.570 24.793 -34.186 5.652 0.235 0.043 N13 VTR 18
VTR C14 C16 C 0 1 N N N N N N -31.562 23.842 -33.474 7.072 0.329 -0.304 C14 VTR 19
VTR N16 N2 N 0 1 N N N N N N -29.941 22.329 -34.206 9.340 0.328 0.621 N16 VTR 20
VTR C18 C17 C 0 1 N N N N N N -27.972 21.147 -34.116 11.582 0.039 1.360 C18 VTR 21
VTR C19 C18 C 0 1 N N N N N N -28.751 20.728 -32.941 11.268 -1.130 0.399 C19 VTR 22
VTR O21 O2 O 0 1 N N N N N N -34.607 25.178 -35.330 5.051 0.426 -2.087 O21 VTR 23
VTR C23 C19 C 0 1 Y N N N N N -35.650 20.853 -34.500 1.580 -0.041 1.104 C23 VTR 24
VTR O25 O3 O 0 1 Y N N N N N -34.255 18.762 -35.163 -0.749 -0.057 0.164 O25 VTR 25
VTR O26 O4 O 0 1 N N N N N N -32.797 16.419 -36.352 -3.082 0.031 -2.545 O26 VTR 26
VTR C27 C20 C 0 1 Y N N N N N -29.745 17.848 -36.993 -4.154 -1.260 0.190 C27 VTR 27
VTR BR28 BR2 BR 0 0 N N N N N N -30.440 18.642 -38.616 -3.500 -2.869 -0.557 BR28 VTR 28
VTR C29 C21 C 0 1 Y N N N N N -28.348 17.814 -36.930 -5.083 -1.299 1.213 C29 VTR 29
VTR O30 O5 O 0 1 N N N N N N -27.610 18.345 -38.010 -5.523 -2.497 1.686 O30 VTR 30
VTR C31 C22 C 0 1 Y N N N N N -27.697 17.276 -35.803 -5.565 -0.115 1.765 C31 VTR 31
VTR O32 O6 O 0 1 N N N N N N -26.293 17.227 -35.703 -6.477 -0.157 2.770 O32 VTR 32
VTR H1 H1 H 0 1 N N N N N N -32.282 22.571 -35.565 2.609 0.379 -2.608 H1 VTR 33
VTR H2 H2 H 0 1 N N N N N N -29.438 24.069 -33.772 7.651 1.051 1.641 H2 VTR 34
VTR H3 H3 H 0 1 N N N N N N -30.379 23.789 -35.276 7.724 -0.719 1.462 H3 VTR 35
VTR H4 H4 H 0 1 N N N N N N -29.348 21.410 -35.828 10.191 1.521 2.167 H4 VTR 36
VTR H5 H5 H 0 1 N N N N N N -28.471 22.906 -35.360 9.818 -0.170 2.636 H5 VTR 37
VTR H6 H6 H 0 1 N N N N N N -29.200 22.484 -32.103 9.195 -1.755 0.283 H6 VTR 38
VTR H7 H7 H 0 1 N N N N N N -30.551 21.318 -32.308 9.752 -0.801 -1.120 H7 VTR 39
VTR H8 H8 H 0 1 N N N N N N -36.359 22.843 -34.088 3.653 0.001 1.535 H8 VTR 40
VTR H9 H9 H 0 1 N N N N N N -28.347 15.932 -33.041 -6.391 2.608 1.379 H9 VTR 41
VTR H10 H10 H 0 1 N N N N N N -31.374 20.046 -36.069 -0.388 0.295 -3.057 H10 VTR 42
VTR H11 H11 H 0 1 N N N N N N -32.327 25.762 -34.240 5.385 0.130 0.970 H11 VTR 43
VTR H12 H12 H 0 1 N N N N N N -32.089 22.898 -33.269 7.264 1.282 -0.797 H12 VTR 44
VTR H13 H13 H 0 1 N N N N N N -31.277 24.317 -32.524 7.336 -0.488 -0.976 H13 VTR 45
VTR H15 H15 H 0 1 N N N N N N -27.624 20.271 -34.682 12.083 0.850 0.832 H15 VTR 46
VTR H16 H16 H 0 1 N N N N N N -27.107 21.754 -33.811 12.185 -0.304 2.201 H16 VTR 47
VTR H17 H17 H 0 1 N N N N N N -29.268 19.777 -33.135 11.370 -2.083 0.916 H17 VTR 48
VTR H18 H18 H 0 1 N N N N N N -28.100 20.619 -32.061 11.930 -1.095 -0.467 H18 VTR 49
VTR H19 H19 H 0 1 N N N N N N -36.570 20.364 -34.217 1.300 -0.162 2.140 H19 VTR 50
VTR H20 H20 H 0 1 N N N N N N -26.681 18.256 -37.833 -4.996 -2.848 2.417 H20 VTR 51
VTR H21 H21 H 0 1 N N N N N N -26.048 16.832 -34.875 -6.087 -0.179 3.655 H21 VTR 52
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
VTR BR28 C27 SING N N 1
VTR O30 C29 SING N N 2
VTR C27 C29 DOUB Y N 3
VTR C27 C05 SING Y N 4
VTR C29 C31 SING Y N 5
VTR O26 C06 DOUB N N 6
VTR C06 C05 SING N N 7
VTR C06 C07 SING N N 8
VTR C05 C03 DOUB Y N 9
VTR C31 O32 SING N N 10
VTR C31 C02 DOUB Y N 11
VTR C08 C07 DOUB Y N 12
VTR C08 C09 SING Y N 13
VTR C07 O25 SING Y N 14
VTR O21 C12 DOUB N N 15
VTR C09 C10 DOUB Y N 16
VTR C09 C24 SING Y N 17
VTR C10 C11 SING Y N 18
VTR O25 C24 SING Y N 19
VTR C17 N16 SING N N 20
VTR C17 C18 SING N N 21
VTR C24 C23 DOUB Y N 22
VTR C03 C02 SING Y N 23
VTR C03 BR04 SING N N 24
VTR C11 C12 SING N N 25
VTR C11 C22 DOUB Y N 26
VTR C12 N13 SING N N 27
VTR C02 O01 SING N N 28
VTR C23 C22 SING Y N 29
VTR C15 N16 SING N N 30
VTR C15 C14 SING N N 31
VTR N16 C20 SING N N 32
VTR N13 C14 SING N N 33
VTR C18 C19 SING N N 34
VTR C19 C20 SING N N 35
VTR C10 H1 SING N N 36
VTR C15 H2 SING N N 37
VTR C15 H3 SING N N 38
VTR C17 H4 SING N N 39
VTR C17 H5 SING N N 40
VTR C20 H6 SING N N 41
VTR C20 H7 SING N N 42
VTR C22 H8 SING N N 43
VTR O01 H9 SING N N 44
VTR C08 H10 SING N N 45
VTR N13 H11 SING N N 46
VTR C14 H12 SING N N 47
VTR C14 H13 SING N N 48
VTR C18 H15 SING N N 49
VTR C18 H16 SING N N 50
VTR C19 H17 SING N N 51
VTR C19 H18 SING N N 52
VTR C23 H19 SING N N 53
VTR O30 H20 SING N N 54
VTR O32 H21 SING N N 55
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
VTR InChI InChI 1.06 "InChI=1S/C22H20Br2N2O6/c23-16-15(17(24)20(29)21(30)19(16)28)18(27)14-10-12-9-11(3-4-13(12)32-14)22(31)25-5-8-26-6-1-2-7-26/h3-4,9-10,28-30H,1-2,5-8H2,(H,25,31)"
VTR InChIKey InChI 1.06 IZFDDCJWJDARBQ-UHFFFAOYSA-N
VTR SMILES_CANONICAL CACTVS 3.385 "Oc1c(O)c(Br)c(c(Br)c1O)C(=O)c2oc3ccc(cc3c2)C(=O)NCCN4CCCC4"
VTR SMILES CACTVS 3.385 "Oc1c(O)c(Br)c(c(Br)c1O)C(=O)c2oc3ccc(cc3c2)C(=O)NCCN4CCCC4"
VTR SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1cc2c(cc1C(=O)NCCN3CCCC3)cc(o2)C(=O)c4c(c(c(c(c4Br)O)O)O)Br"
VTR SMILES "OpenEye OEToolkits" 2.0.7 "c1cc2c(cc1C(=O)NCCN3CCCC3)cc(o2)C(=O)c4c(c(c(c(c4Br)O)O)O)Br"
#
_pdbx_chem_comp_identifier.comp_id VTR
_pdbx_chem_comp_identifier.type "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version 2.0.7
_pdbx_chem_comp_identifier.identifier "2-[2,6-bis(bromanyl)-3,4,5-tris(oxidanyl)phenyl]carbonyl-~{N}-(2-pyrrolidin-1-ylethyl)-1-benzofuran-5-carboxamide"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
VTR "Create component" 2023-03-31 PDBE
VTR "Initial release" 2024-06-19 RCSB
#