data_VU5 # _chem_comp.id VU5 _chem_comp.name "1-[(2S)-2-hydroxy-3-(methylamino)propyl]pyrrolidin-2-one" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C8 H16 N2 O2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2022-09-02 _chem_comp.pdbx_modified_date 2022-10-28 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 172.225 _chem_comp.one_letter_code ? _chem_comp.three_letter_code VU5 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7FMC _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal VU5 N1 N1 N 0 1 N N N 8.339 1.182 -5.000 1.299 -0.335 -0.489 N1 VU5 1 VU5 C7 C1 C 0 1 N N N 8.040 0.252 -5.958 2.057 0.734 -0.192 C7 VU5 2 VU5 O1 O1 O 0 1 N N N 10.160 4.247 -5.332 -0.906 1.013 0.814 O1 VU5 3 VU5 C1 C2 C 0 1 N N N 7.893 3.823 -5.115 -2.488 -0.248 -0.507 C1 VU5 4 VU5 C5 C3 C 0 1 N N N 6.441 0.039 -4.179 3.144 -1.189 0.782 C5 VU5 5 VU5 C6 C4 C 0 1 N N N 6.897 -0.594 -5.486 3.381 0.287 0.388 C6 VU5 6 VU5 C4 C5 C 0 1 N N N 7.324 1.277 -3.955 1.994 -1.587 -0.169 C4 VU5 7 VU5 C3 C6 C 0 1 N N N 9.548 1.950 -5.038 -0.051 -0.260 -1.054 C3 VU5 8 VU5 C2 C7 C 0 1 N N S 9.316 3.419 -4.664 -1.076 -0.201 0.079 C2 VU5 9 VU5 O O2 O 0 1 N N N 8.680 0.191 -6.987 1.729 1.889 -0.364 O VU5 10 VU5 N N2 N 0 1 N N N 7.735 5.331 -5.015 -3.473 -0.192 0.581 N VU5 11 VU5 C C8 C 0 1 N N N 6.818 5.822 -6.101 -4.844 -0.235 0.054 C VU5 12 VU5 H1 H1 H 0 1 N N N 11.057 4.045 -5.094 -1.021 1.813 0.283 H1 VU5 13 VU5 H2 H2 H 0 1 N N N 7.151 3.333 -4.467 -2.634 0.603 -1.173 H2 VU5 14 VU5 H3 H3 H 0 1 N N N 7.736 3.507 -6.157 -2.618 -1.174 -1.068 H3 VU5 15 VU5 H4 H4 H 0 1 N N N 5.384 0.335 -4.250 4.033 -1.791 0.592 H4 VU5 16 VU5 H5 H5 H 0 1 N N N 6.568 -0.672 -3.349 2.836 -1.270 1.824 H5 VU5 17 VU5 H6 H6 H 0 1 N N N 6.081 -0.585 -6.224 4.170 0.361 -0.361 H6 VU5 18 VU5 H7 H7 H 0 1 N N N 7.228 -1.629 -5.318 3.633 0.881 1.267 H7 VU5 19 VU5 H8 H8 H 0 1 N N N 7.787 1.252 -2.957 1.314 -2.279 0.330 H8 VU5 20 VU5 H9 H9 H 0 1 N N N 6.737 2.201 -4.063 2.394 -2.040 -1.076 H9 VU5 21 VU5 H10 H10 H 0 1 N N N 10.267 1.514 -4.329 -0.137 0.636 -1.669 H10 VU5 22 VU5 H11 H11 H 0 1 N N N 9.964 1.905 -6.055 -0.237 -1.141 -1.668 H11 VU5 23 VU5 H12 H12 H 0 1 N N N 9.398 3.537 -3.573 -0.931 -1.052 0.745 H12 VU5 24 VU5 H13 H13 H 0 1 N N N 8.630 5.766 -5.115 -3.332 0.626 1.155 H13 VU5 25 VU5 H15 H15 H 0 1 N N N 6.708 6.914 -6.023 -5.005 0.616 -0.607 H15 VU5 26 VU5 H16 H16 H 0 1 N N N 7.242 5.566 -7.083 -4.990 -1.161 -0.502 H16 VU5 27 VU5 H17 H17 H 0 1 N N N 5.833 5.346 -5.992 -5.552 -0.192 0.881 H17 VU5 28 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal VU5 O C7 DOUB N N 1 VU5 C N SING N N 2 VU5 C7 C6 SING N N 3 VU5 C7 N1 SING N N 4 VU5 C6 C5 SING N N 5 VU5 O1 C2 SING N N 6 VU5 C1 N SING N N 7 VU5 C1 C2 SING N N 8 VU5 C3 N1 SING N N 9 VU5 C3 C2 SING N N 10 VU5 N1 C4 SING N N 11 VU5 C5 C4 SING N N 12 VU5 O1 H1 SING N N 13 VU5 C1 H2 SING N N 14 VU5 C1 H3 SING N N 15 VU5 C5 H4 SING N N 16 VU5 C5 H5 SING N N 17 VU5 C6 H6 SING N N 18 VU5 C6 H7 SING N N 19 VU5 C4 H8 SING N N 20 VU5 C4 H9 SING N N 21 VU5 C3 H10 SING N N 22 VU5 C3 H11 SING N N 23 VU5 C2 H12 SING N N 24 VU5 N H13 SING N N 25 VU5 C H15 SING N N 26 VU5 C H16 SING N N 27 VU5 C H17 SING N N 28 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor VU5 SMILES ACDLabs 12.01 "O=C1CCCN1CC(O)CNC" VU5 InChI InChI 1.06 "InChI=1S/C8H16N2O2/c1-9-5-7(11)6-10-4-2-3-8(10)12/h7,9,11H,2-6H2,1H3/t7-/m0/s1" VU5 InChIKey InChI 1.06 ZMESCLLKMGZIBU-ZETCQYMHSA-N VU5 SMILES_CANONICAL CACTVS 3.385 "CNC[C@H](O)CN1CCCC1=O" VU5 SMILES CACTVS 3.385 "CNC[CH](O)CN1CCCC1=O" VU5 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CNC[C@@H](CN1CCCC1=O)O" VU5 SMILES "OpenEye OEToolkits" 2.0.7 "CNCC(CN1CCCC1=O)O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier VU5 "SYSTEMATIC NAME" ACDLabs 12.01 "1-[(2S)-2-hydroxy-3-(methylamino)propyl]pyrrolidin-2-one" VU5 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "1-[(2~{S})-3-(methylamino)-2-oxidanyl-propyl]pyrrolidin-2-one" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site VU5 "Create component" 2022-09-02 RCSB VU5 "Initial release" 2022-11-02 RCSB #