data_VU6 # _chem_comp.id VU6 _chem_comp.name "(7~{S})-2'-azanyl-3-[2-[(2~{S})-2-methylpiperazin-1-yl]pyrimidin-4-yl]spiro[5,6-dihydro-4~{H}-1,2-benzoxazole-7,4'-6,7-dihydro-5~{H}-1-benzothiophene]-3'-carbonitrile" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C24 H27 N7 O S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-04-04 _chem_comp.pdbx_modified_date 2023-06-02 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 461.582 _chem_comp.one_letter_code ? _chem_comp.three_letter_code VU6 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8ONV _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal VU6 C4 C1 C 0 1 N N N 17.983 -2.194 4.739 3.264 0.892 2.149 C4 VU6 1 VU6 N12 N1 N 0 1 Y N N 23.744 -0.003 5.754 -2.739 0.373 -0.183 N12 VU6 2 VU6 C13 C2 C 0 1 Y N N 22.787 -1.532 7.324 -2.206 2.405 -1.235 C13 VU6 3 VU6 C17 C3 C 0 1 Y N N 20.127 -0.150 6.645 0.246 -0.246 -0.056 C17 VU6 4 VU6 C20 C4 C 0 1 N N N 17.393 -0.175 7.400 2.159 -1.669 1.390 C20 VU6 5 VU6 C21 C5 C 0 1 Y N N 19.211 0.417 5.835 1.499 -0.317 -0.565 C21 VU6 6 VU6 C22 C6 C 0 1 Y N N 16.886 0.078 4.965 3.878 -0.442 0.079 C22 VU6 7 VU6 C24 C7 C 0 1 N N N 15.418 2.153 4.829 4.863 -1.562 -1.959 C24 VU6 8 VU6 C26 C8 C 0 1 N N N 17.454 2.117 6.290 2.766 -2.425 -0.919 C26 VU6 9 VU6 C28 C9 C 0 1 N N S 25.917 1.131 4.474 -6.254 0.563 0.544 C28 VU6 10 VU6 C1 C10 C 0 1 Y N N 17.016 -1.209 4.378 4.178 0.541 1.104 C1 VU6 11 VU6 C11 C11 C 0 1 Y N N 24.943 -0.488 6.132 -3.995 0.776 -0.076 C11 VU6 12 VU6 C14 C12 C 0 1 Y N N 24.066 -1.940 7.636 -3.530 2.786 -1.103 C14 VU6 13 VU6 C16 C13 C 0 1 Y N N 21.350 -0.036 5.932 -0.414 0.697 -0.869 C16 VU6 14 VU6 C18 C14 C 0 1 N N N 19.763 -0.700 7.993 -0.250 -1.040 1.116 C18 VU6 15 VU6 C19 C15 C 0 1 N N N 18.470 -0.066 8.474 0.724 -2.202 1.360 C19 VU6 16 VU6 C2 C16 C 0 1 Y N N 16.096 -1.446 3.368 5.418 1.100 0.972 C2 VU6 17 VU6 C23 C17 C 0 1 Y N N 15.876 0.790 4.397 4.887 -0.601 -0.786 C23 VU6 18 VU6 C25 C18 C 0 1 N N N 15.970 2.462 6.218 3.414 -1.974 -2.231 C25 VU6 19 VU6 C27 C19 C 0 1 N N S 17.740 0.605 6.109 2.572 -1.212 -0.011 C27 VU6 20 VU6 C29 C20 C 0 1 N N N 26.789 0.874 3.267 -7.231 -0.356 1.281 C29 VU6 21 VU6 C31 C21 C 0 1 N N N 28.227 -0.655 4.575 -5.945 -2.283 0.584 C31 VU6 22 VU6 C32 C22 C 0 1 N N N 27.417 -0.403 5.824 -4.967 -1.364 -0.153 C32 VU6 23 VU6 C33 C23 C 0 1 N N N 26.178 2.489 5.094 -6.741 0.781 -0.890 C33 VU6 24 VU6 C9 C24 C 0 1 Y N N 22.674 -0.539 6.363 -1.823 1.153 -0.751 C9 VU6 25 VU6 N10 N2 N 0 1 N N N 26.075 0.057 5.468 -4.923 -0.059 0.521 N10 VU6 26 VU6 N15 N3 N 0 1 Y N N 25.165 -1.436 7.057 -4.387 1.960 -0.526 N15 VU6 27 VU6 N30 N4 N 0 1 N N N 28.180 0.531 3.676 -7.276 -1.661 0.607 N30 VU6 28 VU6 N5 N5 N 0 1 N N N 18.726 -3.015 5.031 2.539 1.170 2.978 N5 VU6 29 VU6 N6 N6 N 0 1 N N N 15.933 -2.549 2.632 5.942 2.061 1.819 N6 VU6 30 VU6 N7 N7 N 0 1 Y N N 21.179 0.558 4.776 0.476 1.091 -1.752 N7 VU6 31 VU6 O8 O1 O 0 1 Y N N 19.778 0.861 4.701 1.542 0.532 -1.590 O8 VU6 32 VU6 S3 S1 S 0 1 Y N N 15.070 -0.083 3.138 6.231 0.452 -0.376 S3 VU6 33 VU6 H13 H1 H 0 1 N N N 21.920 -1.963 7.802 -1.486 3.060 -1.702 H13 VU6 34 VU6 H20B H2 H 0 0 N N N 16.452 0.223 7.807 2.219 -0.826 2.079 H20B VU6 35 VU6 H20A H3 H 0 0 N N N 17.262 -1.236 7.143 2.831 -2.459 1.726 H20A VU6 36 VU6 H24A H4 H 0 0 N N N 15.783 2.905 4.114 5.275 -1.072 -2.841 H24A VU6 37 VU6 H24B H5 H 0 0 N N N 14.319 2.178 4.858 5.456 -2.445 -1.721 H24B VU6 38 VU6 H26B H6 H 0 0 N N N 17.838 2.430 7.272 1.798 -2.881 -1.128 H26B VU6 39 VU6 H26A H7 H 0 0 N N N 17.980 2.669 5.497 3.411 -3.151 -0.424 H26A VU6 40 VU6 H28 H8 H 0 1 N N N 24.872 1.123 4.132 -6.198 1.523 1.059 H28 VU6 41 VU6 H14 H9 H 0 1 N N N 24.189 -2.706 8.387 -3.860 3.749 -1.466 H14 VU6 42 VU6 H18A H10 H 0 0 N N N 19.630 -1.789 7.919 -0.291 -0.403 2.000 H18A VU6 43 VU6 H18B H11 H 0 0 N N N 20.568 -0.476 8.708 -1.244 -1.433 0.900 H18B VU6 44 VU6 H19B H12 H 0 0 N N N 18.649 0.995 8.701 0.624 -2.933 0.558 H19B VU6 45 VU6 H19A H13 H 0 0 N N N 18.129 -0.583 9.383 0.492 -2.676 2.313 H19A VU6 46 VU6 H25A H14 H 0 0 N N N 15.836 3.533 6.431 2.863 -1.125 -2.636 H25A VU6 47 VU6 H25B H15 H 0 0 N N N 15.423 1.868 6.965 3.398 -2.796 -2.948 H25B VU6 48 VU6 H29B H16 H 0 0 N N N 26.811 1.778 2.640 -6.899 -0.489 2.311 H29B VU6 49 VU6 H29A H17 H 0 0 N N N 26.367 0.038 2.690 -8.226 0.091 1.275 H29A VU6 50 VU6 H31A H18 H 0 0 N N N 27.815 -1.527 4.046 -6.001 -3.242 0.069 H31A VU6 51 VU6 H31B H19 H 0 0 N N N 29.272 -0.856 4.855 -5.598 -2.439 1.605 H31B VU6 52 VU6 H32B H20 H 0 0 N N N 27.341 -1.336 6.402 -3.973 -1.811 -0.147 H32B VU6 53 VU6 H32A H21 H 0 0 N N N 27.916 0.366 6.432 -5.299 -1.231 -1.183 H32A VU6 54 VU6 H33B H22 H 0 0 N N N 25.521 2.627 5.965 -6.798 -0.178 -1.404 H33B VU6 55 VU6 H33C H23 H 0 0 N N N 27.229 2.550 5.414 -7.728 1.243 -0.872 H33C VU6 56 VU6 H33A H24 H 0 0 N N N 25.974 3.276 4.353 -6.044 1.434 -1.415 H33A VU6 57 VU6 H30A H25 H 0 0 N N N 28.717 0.335 2.856 -7.952 -2.270 1.042 H30A VU6 58 VU6 H6B H27 H 0 1 N N N 15.173 -2.417 1.996 5.419 2.384 2.569 H6B VU6 59 VU6 H6A H28 H 0 1 N N N 16.770 -2.732 2.117 6.833 2.413 1.662 H6A VU6 60 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal VU6 N6 C2 SING N N 1 VU6 S3 C2 SING Y N 2 VU6 S3 C23 SING Y N 3 VU6 C29 N30 SING N N 4 VU6 C29 C28 SING N N 5 VU6 C2 C1 DOUB Y N 6 VU6 N30 C31 SING N N 7 VU6 C1 C4 SING N N 8 VU6 C1 C22 SING Y N 9 VU6 C23 C24 SING N N 10 VU6 C23 C22 DOUB Y N 11 VU6 C28 C33 SING N N 12 VU6 C28 N10 SING N N 13 VU6 C31 C32 SING N N 14 VU6 O8 N7 SING Y N 15 VU6 O8 C21 SING Y N 16 VU6 C4 N5 TRIP N N 17 VU6 N7 C16 DOUB Y N 18 VU6 C24 C25 SING N N 19 VU6 C22 C27 SING N N 20 VU6 N10 C32 SING N N 21 VU6 N10 C11 SING N N 22 VU6 N12 C11 DOUB Y N 23 VU6 N12 C9 SING Y N 24 VU6 C21 C27 SING N N 25 VU6 C21 C17 DOUB Y N 26 VU6 C16 C9 SING N N 27 VU6 C16 C17 SING Y N 28 VU6 C27 C26 SING N N 29 VU6 C27 C20 SING N N 30 VU6 C11 N15 SING Y N 31 VU6 C25 C26 SING N N 32 VU6 C9 C13 DOUB Y N 33 VU6 C17 C18 SING N N 34 VU6 N15 C14 DOUB Y N 35 VU6 C13 C14 SING Y N 36 VU6 C20 C19 SING N N 37 VU6 C18 C19 SING N N 38 VU6 C13 H13 SING N N 39 VU6 C20 H20B SING N N 40 VU6 C20 H20A SING N N 41 VU6 C24 H24A SING N N 42 VU6 C24 H24B SING N N 43 VU6 C26 H26B SING N N 44 VU6 C26 H26A SING N N 45 VU6 C28 H28 SING N N 46 VU6 C14 H14 SING N N 47 VU6 C18 H18A SING N N 48 VU6 C18 H18B SING N N 49 VU6 C19 H19B SING N N 50 VU6 C19 H19A SING N N 51 VU6 C25 H25A SING N N 52 VU6 C25 H25B SING N N 53 VU6 C29 H29B SING N N 54 VU6 C29 H29A SING N N 55 VU6 C31 H31A SING N N 56 VU6 C31 H31B SING N N 57 VU6 C32 H32B SING N N 58 VU6 C32 H32A SING N N 59 VU6 C33 H33B SING N N 60 VU6 C33 H33C SING N N 61 VU6 C33 H33A SING N N 62 VU6 N30 H30A SING N N 63 VU6 N6 H6B SING N N 64 VU6 N6 H6A SING N N 65 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor VU6 InChI InChI 1.06 "InChI=1S/C24H27N7OS/c1-14-13-27-10-11-31(14)23-28-9-6-17(29-23)20-15-4-2-7-24(21(15)32-30-20)8-3-5-18-19(24)16(12-25)22(26)33-18/h6,9,14,27H,2-5,7-8,10-11,13,26H2,1H3/t14-,24-/m0/s1" VU6 InChIKey InChI 1.06 PVOYBVVIBNPTPJ-BSEYFRJRSA-N VU6 SMILES_CANONICAL CACTVS 3.385 "C[C@H]1CNCCN1c2nccc(n2)c3noc4c3CCC[C@@]45CCCc6sc(N)c(C#N)c56" VU6 SMILES CACTVS 3.385 "C[CH]1CNCCN1c2nccc(n2)c3noc4c3CCC[C]45CCCc6sc(N)c(C#N)c56" VU6 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C[C@H]1CNCCN1c2nccc(n2)c3c4c(on3)[C@@]5(CCC4)CCCc6c5c(c(s6)N)C#N" VU6 SMILES "OpenEye OEToolkits" 2.0.7 "CC1CNCCN1c2nccc(n2)c3c4c(on3)C5(CCC4)CCCc6c5c(c(s6)N)C#N" # _pdbx_chem_comp_identifier.comp_id VU6 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(7~{S})-2'-azanyl-3-[2-[(2~{S})-2-methylpiperazin-1-yl]pyrimidin-4-yl]spiro[5,6-dihydro-4~{H}-1,2-benzoxazole-7,4'-6,7-dihydro-5~{H}-1-benzothiophene]-3'-carbonitrile" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site VU6 "Create component" 2023-04-04 PDBE VU6 "Initial release" 2023-06-07 RCSB #