data_VUB # _chem_comp.id VUB _chem_comp.name "2-[4-[(4-hydroxyphenyl)methyl]-2-(3-methylbutanimidoyl)-5-oxidanyl-imidazol-1-yl]ethanoic acid" _chem_comp.type "L-peptide linking" _chem_comp.pdbx_type ATOMP _chem_comp.formula "C17 H21 N3 O4" _chem_comp.mon_nstd_parent_comp_id LEU,TYR,GLY _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-04-05 _chem_comp.pdbx_modified_date 2023-11-03 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 331.366 _chem_comp.one_letter_code LYG _chem_comp.three_letter_code VUB _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7Q6B _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal VUB C3 C C 0 1 N N N Y N Y -13.261 -6.926 -19.038 1.975 -2.031 0.996 C VUB 1 VUB O3 O O 0 1 N N N Y N Y -12.020 -6.748 -18.657 1.185 -1.406 1.664 O VUB 2 VUB CA3 CA3 C 0 1 N N N Y N N -13.573 -7.817 -20.274 1.998 -1.860 -0.501 CA3 VUB 3 VUB N3 N3 N 0 1 Y N N Y N N -14.890 -7.742 -20.931 0.975 -0.889 -0.897 N3 VUB 4 VUB C1 C1 C 0 1 Y N N Y N N -15.609 -6.716 -21.533 1.110 0.477 -0.922 C1 VUB 5 VUB CA1 CA1 C 0 1 N N N Y N N -15.222 -5.292 -21.728 2.315 1.227 -0.553 CA1 VUB 6 VUB CB1 CB1 C 0 1 N N N N N N -16.173 -4.314 -22.397 3.583 0.492 -0.201 CB1 VUB 7 VUB CG1 CG1 C 0 1 N N N N N N -16.650 -3.187 -21.469 4.636 1.492 0.280 CG1 VUB 8 VUB CD4 CD4 C 0 1 N N N N N N -17.724 -2.405 -22.209 4.168 2.138 1.585 CD4 VUB 9 VUB CD3 CD3 C 0 1 N N N N N N -15.574 -2.206 -20.974 5.960 0.764 0.518 CD3 VUB 10 VUB N1 N N 0 1 N N N Y Y N -14.030 -4.864 -21.578 2.290 2.524 -0.529 N VUB 11 VUB C2 C2 C 0 1 Y N N Y N N -15.680 -8.811 -21.165 -0.292 -1.171 -1.317 C2 VUB 12 VUB O2 O2 O 0 1 N N N Y N N -15.241 -10.031 -20.701 -0.844 -2.402 -1.447 O2 VUB 13 VUB CA2 CA2 C 0 1 Y N N Y N N -16.903 -8.486 -21.846 -0.897 0.021 -1.581 CA2 VUB 14 VUB N2 N2 N 0 1 Y N N Y N N -16.804 -7.172 -22.062 -0.027 0.998 -1.334 N2 VUB 15 VUB CB2 CB2 C 0 1 N N N N N N -18.132 -9.152 -22.524 -2.309 0.202 -2.073 CB2 VUB 16 VUB CG2 CG2 C 0 1 Y N N N N N -18.367 -10.579 -22.307 -3.240 0.327 -0.895 CG2 VUB 17 VUB CD1 CD1 C 0 1 Y N N N N N -19.486 -11.219 -21.778 -3.513 1.572 -0.359 CD1 VUB 18 VUB CE1 CE1 C 0 1 Y N N N N N -19.366 -12.594 -21.454 -4.365 1.689 0.721 CE1 VUB 19 VUB CD2 CD2 C 0 1 Y N N N N N -17.216 -11.321 -22.539 -3.825 -0.804 -0.354 CD2 VUB 20 VUB CE2 CE2 C 0 1 Y N N N N N -17.148 -12.645 -22.197 -4.679 -0.692 0.726 CE2 VUB 21 VUB CZ CZ C 0 1 Y N N N N N -18.209 -13.293 -21.670 -4.949 0.555 1.269 CZ VUB 22 VUB OH OH O 0 1 N N N N N N -18.033 -14.587 -21.388 -5.789 0.668 2.331 OH VUB 23 VUB OXT OXT O 0 1 N Y N Y N Y -14.296 -6.429 -18.448 2.836 -2.873 1.589 OXT VUB 24 VUB HA32 HA3 H 0 1 N N N Y N N -13.439 -8.861 -19.953 2.979 -1.500 -0.811 HA3 VUB 25 VUB HA31 HA3A H 0 0 N N N Y N N -12.823 -7.569 -21.040 1.795 -2.818 -0.979 HA3A VUB 26 VUB HB1 HB1 H 0 1 N N N N N N -15.658 -3.861 -23.257 3.377 -0.228 0.591 HB1 VUB 27 VUB HB1A HB1A H 0 0 N N N N N N -17.054 -4.871 -22.749 3.955 -0.032 -1.081 HB1A VUB 28 VUB HG1 HG1 H 0 1 N N N N N N -17.114 -3.651 -20.586 4.777 2.263 -0.478 HG1 VUB 29 VUB HD4 HD4 H 0 1 N N N N N N -18.089 -1.587 -21.570 4.918 2.851 1.927 HD4 VUB 30 VUB HD4A HD4A H 0 0 N N N N N N -17.301 -1.987 -23.134 3.224 2.658 1.415 HD4A VUB 31 VUB HD4B HD4B H 0 0 N N N N N N -18.559 -3.076 -22.458 4.027 1.367 2.342 HD4B VUB 32 VUB HD3 HD3 H 0 1 N N N N N N -16.038 -1.451 -20.322 6.294 0.303 -0.412 HD3 VUB 33 VUB HD3A HD3A H 0 0 N N N N N N -14.808 -2.757 -20.409 6.710 1.476 0.860 HD3A VUB 34 VUB HD3B HD3B H 0 0 N N N N N N -15.107 -1.708 -21.837 5.819 -0.008 1.275 HD3B VUB 35 VUB H HN H 0 1 N Y N Y Y N -13.400 -5.595 -21.317 1.456 2.996 -0.683 HN VUB 36 VUB HB2 HB2 H 0 1 N N N N N N -18.024 -9.003 -23.608 -2.370 1.105 -2.681 HB2 VUB 37 VUB H15 H15 H 0 1 N N N N N N -19.026 -8.619 -22.168 -2.598 -0.660 -2.675 H15 VUB 38 VUB HD1 HD1 H 0 1 N N N N N N -20.412 -10.686 -21.620 -3.058 2.454 -0.785 HD1 VUB 39 VUB HE1 HE1 H 0 1 N N N N N N -20.214 -13.106 -21.023 -4.577 2.661 1.140 HE1 VUB 40 VUB HD2 HD2 H 0 1 N N N N N N -16.361 -10.846 -22.997 -3.613 -1.775 -0.777 HD2 VUB 41 VUB HE2 HE2 H 0 1 N N N N N N -16.225 -13.183 -22.352 -5.135 -1.576 1.147 HE2 VUB 42 VUB HOH HOH H 0 1 N N N N N N -18.835 -14.944 -21.025 -5.347 0.609 3.190 HOH VUB 43 VUB HXT HXT H 0 1 N Y N Y N Y -14.018 -5.917 -17.698 2.787 -2.947 2.552 HXT VUB 44 VUB HO2 H22 H 0 1 N N N Y N N -14.390 -9.927 -20.293 -1.290 -2.719 -0.650 H22 VUB 45 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal VUB CD2 CG2 DOUB Y N 1 VUB CD2 CE2 SING Y N 2 VUB CB2 CG2 SING N N 3 VUB CB2 CA2 SING N N 4 VUB CB1 CA1 SING N N 5 VUB CB1 CG1 SING N N 6 VUB CG2 CD1 SING Y N 7 VUB CD4 CG1 SING N N 8 VUB CE2 CZ DOUB Y N 9 VUB N2 CA2 SING Y N 10 VUB N2 C1 DOUB Y N 11 VUB CA2 C2 DOUB Y N 12 VUB CD1 CE1 DOUB Y N 13 VUB CA1 N1 DOUB N N 14 VUB CA1 C1 SING N N 15 VUB CZ CE1 SING Y N 16 VUB CZ OH SING N N 17 VUB C1 N3 SING Y N 18 VUB CG1 CD3 SING N N 19 VUB C2 N3 SING Y N 20 VUB C2 O2 SING N N 21 VUB N3 CA3 SING N N 22 VUB CA3 C3 SING N N 23 VUB C3 O3 DOUB N N 24 VUB C3 OXT SING N N 25 VUB CA3 HA32 SING N N 26 VUB CA3 HA31 SING N N 27 VUB CB1 HB1 SING N N 28 VUB CB1 HB1A SING N N 29 VUB CG1 HG1 SING N N 30 VUB CD4 HD4 SING N N 31 VUB CD4 HD4A SING N N 32 VUB CD4 HD4B SING N N 33 VUB CD3 HD3 SING N N 34 VUB CD3 HD3A SING N N 35 VUB CD3 HD3B SING N N 36 VUB N1 H SING N N 37 VUB CB2 HB2 SING N N 38 VUB CB2 H15 SING N N 39 VUB CD1 HD1 SING N N 40 VUB CE1 HE1 SING N N 41 VUB CD2 HD2 SING N N 42 VUB CE2 HE2 SING N N 43 VUB OH HOH SING N N 44 VUB OXT HXT SING N N 45 VUB O2 HO2 SING N N 46 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor VUB InChI InChI 1.06 "InChI=1S/C17H21N3O4/c1-10(2)7-13(18)16-19-14(17(24)20(16)9-15(22)23)8-11-3-5-12(21)6-4-11/h3-6,10,18,21,24H,7-9H2,1-2H3,(H,22,23)/b18-13-" VUB InChIKey InChI 1.06 OCWUNMVDAKROFH-AQTBWJFISA-N VUB SMILES_CANONICAL CACTVS 3.385 "CC(C)CC(=N)c1nc(Cc2ccc(O)cc2)c(O)n1CC(O)=O" VUB SMILES CACTVS 3.385 "CC(C)CC(=N)c1nc(Cc2ccc(O)cc2)c(O)n1CC(O)=O" VUB SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "[H]/N=C(/CC(C)C)\c1nc(c(n1CC(=O)O)O)Cc2ccc(cc2)O" VUB SMILES "OpenEye OEToolkits" 2.0.7 "CC(C)CC(=N)c1nc(c(n1CC(=O)O)O)Cc2ccc(cc2)O" # _pdbx_chem_comp_identifier.comp_id VUB _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "2-[4-[(4-hydroxyphenyl)methyl]-2-(3-methylbutanimidoyl)-5-oxidanyl-imidazol-1-yl]ethanoic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site VUB "Create component" 2023-04-05 PDBE VUB "Initial release" 2023-04-12 RCSB VUB "Modify backbone" 2023-11-03 PDBE #