data_VUL # _chem_comp.id VUL _chem_comp.name "[(2R,3S,4R,5R)-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl N-decanoylsulfamate" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C20 H32 N6 O7 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-08-18 _chem_comp.pdbx_modified_date 2024-07-05 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 500.569 _chem_comp.one_letter_code ? _chem_comp.three_letter_code VUL _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8JYL _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal VUL C1 C1 C 0 1 N N N N N N 107.841 172.045 142.195 10.776 2.536 -0.455 C1 VUL 1 VUL C2 C2 C 0 1 N N N N N N 109.017 172.992 142.411 9.552 2.101 0.353 C2 VUL 2 VUL O1 O1 O 0 1 N N N N N N 116.999 177.162 145.037 0.969 -2.823 1.254 O1 VUL 3 VUL C5 C3 C 0 1 N N N N N N 111.247 174.848 143.967 6.542 -0.115 -0.572 C5 VUL 4 VUL C6 C4 C 0 1 N N N N N N 112.527 175.161 144.718 5.317 -0.549 0.236 C6 VUL 5 VUL C7 C5 C 0 1 N N N N N N 113.796 174.724 144.016 4.424 -1.440 -0.631 C7 VUL 6 VUL C8 C6 C 0 1 N N N N N N 114.854 175.789 144.216 3.200 -1.875 0.177 C8 VUL 7 VUL N1 N1 N 0 1 N N N N N N 118.715 175.855 144.343 0.170 -3.988 -0.456 N1 VUL 8 VUL C4 C7 C 0 1 N N N N N N 110.768 173.429 144.206 7.435 0.776 0.294 C4 VUL 9 VUL C3 C8 C 0 1 N N N N N N 109.284 173.254 143.891 8.659 1.211 -0.514 C3 VUL 10 VUL S1 S1 S 0 1 N N N N N N 119.938 176.848 145.016 -1.156 -4.458 0.418 S1 VUL 11 VUL N2 N2 N 0 1 Y N N N N N 115.876 178.027 149.437 -2.444 1.991 0.047 N2 VUL 12 VUL O2 O2 O 0 1 N N N N N N 120.135 178.104 144.006 -1.952 -5.249 -0.454 O2 VUL 13 VUL N3 N3 N 0 1 Y N N N N N 114.180 177.211 148.417 -0.684 3.172 -0.473 N3 VUL 14 VUL O3 O3 O 0 1 N N N N N N 121.330 176.021 145.160 -0.666 -4.931 1.665 O3 VUL 15 VUL N4 N4 N 0 1 Y N N N N N 114.624 179.002 151.336 -3.802 3.925 0.850 N4 VUL 16 VUL O4 O4 O 0 1 N N N N N N 119.553 177.459 146.484 -1.964 -3.205 0.721 O4 VUL 17 VUL N5 N5 N 0 1 Y N N N N N 112.370 178.696 151.287 -2.738 5.973 0.721 N5 VUL 18 VUL O5 O5 O 0 1 N N N N N N 118.153 178.280 148.469 -2.550 -0.377 0.341 O5 VUL 19 VUL N6 N6 N 0 1 N N N N N N 111.277 177.535 149.556 -0.544 6.221 -0.108 N6 VUL 20 VUL O6 O6 O 0 1 N N N N N N 118.785 178.303 151.389 -5.503 1.192 -0.824 O6 VUL 21 VUL O7 O7 O 0 1 N N N N N N 119.283 175.779 150.419 -5.657 -1.339 -1.058 O7 VUL 22 VUL C9 C9 C 0 1 N N N N N N 116.245 175.293 143.864 2.307 -2.765 -0.689 C9 VUL 23 VUL C10 C10 C 0 1 N N N N N N 117.313 176.194 144.460 1.101 -3.193 0.107 C10 VUL 24 VUL C11 C11 C 0 1 N N N N N N 119.387 176.553 147.516 -2.694 -2.700 -0.399 C11 VUL 25 VUL C12 C12 C 0 1 N N R N N N 119.054 177.391 148.751 -3.465 -1.446 0.019 C12 VUL 26 VUL C13 C13 C 0 1 N N S N N N 118.359 176.503 149.767 -4.299 -0.908 -1.165 C13 VUL 27 VUL C14 C14 C 0 1 N N R N N N 117.718 177.581 150.645 -4.206 0.627 -1.023 C14 VUL 28 VUL C15 C15 C 0 1 N N R N N N 117.217 178.399 149.771 -3.326 0.836 0.229 C15 VUL 29 VUL C16 C16 C 0 1 Y N N N N N 114.797 178.339 150.177 -2.744 3.296 0.348 C16 VUL 30 VUL C17 C17 C 0 1 Y N N N N N 113.720 177.815 149.531 -1.603 4.043 0.008 C17 VUL 31 VUL C18 C18 C 0 1 Y N N N N N 115.482 177.348 148.381 -1.174 1.967 -0.446 C18 VUL 32 VUL C19 C19 C 0 1 Y N N N N N 113.445 179.179 151.870 -3.785 5.229 1.027 C19 VUL 33 VUL C20 C20 C 0 1 Y N N N N N 112.474 178.035 150.150 -1.635 5.433 0.212 C20 VUL 34 VUL H1 H1 H 0 1 N N N N N N 107.689 171.888 141.117 11.412 3.170 0.162 H1 VUL 35 VUL H2 H2 H 0 1 N N N N N N 108.053 171.080 142.679 11.336 1.655 -0.768 H2 VUL 36 VUL H3 H3 H 0 1 N N N N N N 106.932 172.483 142.633 10.452 3.092 -1.334 H3 VUL 37 VUL H4 H4 H 0 1 N N N N N N 109.917 172.547 141.962 9.876 1.545 1.232 H4 VUL 38 VUL H5 H5 H 0 1 N N N N N N 108.796 173.949 141.916 8.992 2.982 0.666 H5 VUL 39 VUL H6 H6 H 0 1 N N N N N N 111.427 174.983 142.890 7.102 -0.996 -0.886 H6 VUL 40 VUL H7 H7 H 0 1 N N N N N N 110.464 175.546 144.298 6.218 0.442 -1.452 H7 VUL 41 VUL H8 H8 H 0 1 N N N N N N 112.577 176.249 144.871 5.641 -1.106 1.115 H8 VUL 42 VUL H9 H9 H 0 1 N N N N N N 112.484 174.655 145.694 4.757 0.332 0.549 H9 VUL 43 VUL H10 H10 H 0 1 N N N N N N 113.599 174.595 142.941 4.100 -0.883 -1.510 H10 VUL 44 VUL H11 H11 H 0 1 N N N N N N 114.145 173.771 144.441 4.984 -2.321 -0.944 H11 VUL 45 VUL H12 H12 H 0 1 N N N N N N 114.846 176.102 145.271 3.524 -2.431 1.057 H12 VUL 46 VUL H13 H13 H 0 1 N N N N N N 114.613 176.651 143.576 2.640 -0.993 0.491 H13 VUL 47 VUL H14 H14 H 0 1 N N N N N N 118.976 175.021 143.857 0.275 -4.284 -1.374 H14 VUL 48 VUL H15 H15 H 0 1 N N N N N N 110.938 173.172 145.262 6.874 1.657 0.608 H15 VUL 49 VUL H16 H16 H 0 1 N N N N N N 111.348 172.748 143.565 7.758 0.220 1.174 H16 VUL 50 VUL H17 H17 H 0 1 N N N N N N 108.752 174.170 144.187 8.335 1.767 -1.393 H17 VUL 51 VUL H18 H18 H 0 1 N N N N N N 108.900 172.403 144.473 9.219 0.330 -0.827 H18 VUL 52 VUL H19 H19 H 0 1 N N N N N N 110.494 177.777 150.128 0.256 5.815 -0.479 H19 VUL 53 VUL H20 H20 H 0 1 N N N N N N 111.163 177.937 148.647 -0.578 7.180 0.037 H20 VUL 54 VUL H21 H21 H 0 1 N N N N N N 118.392 178.973 151.936 -6.116 1.038 -1.556 H21 VUL 55 VUL H22 H22 H 0 1 N N N N N N 118.856 175.220 151.057 -6.226 -1.030 -1.776 H22 VUL 56 VUL H23 H23 H 0 1 N N N N N N 116.374 174.274 144.258 1.983 -2.208 -1.569 H23 VUL 57 VUL H24 H24 H 0 1 N N N N N N 116.356 175.280 142.770 2.867 -3.646 -1.003 H24 VUL 58 VUL H25 H25 H 0 1 N N N N N N 118.564 175.860 147.289 -2.001 -2.449 -1.202 H25 VUL 59 VUL H26 H26 H 0 1 N N N N N N 120.313 175.982 147.678 -3.395 -3.458 -0.748 H26 VUL 60 VUL H27 H27 H 0 1 N N N N N N 119.975 177.812 149.181 -4.109 -1.664 0.871 H27 VUL 61 VUL H28 H28 H 0 1 N N N N N N 117.584 175.891 149.282 -3.870 -1.233 -2.113 H28 VUL 62 VUL H29 H29 H 0 1 N N N N N N 116.982 177.136 151.331 -3.731 1.064 -1.902 H29 VUL 63 VUL H30 H30 H 0 1 N N N N N N 117.246 179.444 150.113 -3.949 0.970 1.114 H30 VUL 64 VUL H31 H31 H 0 1 N N N N N N 116.130 176.964 147.607 -0.653 1.079 -0.773 H31 VUL 65 VUL H32 H32 H 0 1 N N N N N N 113.353 179.726 152.797 -4.661 5.709 1.437 H32 VUL 66 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal VUL C1 C2 SING N N 1 VUL C2 C3 SING N N 2 VUL C9 C8 SING N N 3 VUL C9 C10 SING N N 4 VUL C3 C4 SING N N 5 VUL C5 C4 SING N N 6 VUL C5 C6 SING N N 7 VUL O2 S1 DOUB N N 8 VUL C7 C8 SING N N 9 VUL C7 C6 SING N N 10 VUL N1 C10 SING N N 11 VUL N1 S1 SING N N 12 VUL C10 O1 DOUB N N 13 VUL S1 O3 DOUB N N 14 VUL S1 O4 SING N N 15 VUL O4 C11 SING N N 16 VUL C11 C12 SING N N 17 VUL C18 N3 DOUB Y N 18 VUL C18 N2 SING Y N 19 VUL N3 C17 SING Y N 20 VUL O5 C12 SING N N 21 VUL O5 C15 SING N N 22 VUL C12 C13 SING N N 23 VUL N2 C15 SING N N 24 VUL N2 C16 SING Y N 25 VUL C17 C20 DOUB Y N 26 VUL C17 C16 SING Y N 27 VUL N6 C20 SING N N 28 VUL C13 O7 SING N N 29 VUL C13 C14 SING N N 30 VUL C15 C14 SING N N 31 VUL C20 N5 SING Y N 32 VUL C16 N4 DOUB Y N 33 VUL C14 O6 SING N N 34 VUL N5 C19 DOUB Y N 35 VUL N4 C19 SING Y N 36 VUL C1 H1 SING N N 37 VUL C1 H2 SING N N 38 VUL C1 H3 SING N N 39 VUL C2 H4 SING N N 40 VUL C2 H5 SING N N 41 VUL C5 H6 SING N N 42 VUL C5 H7 SING N N 43 VUL C6 H8 SING N N 44 VUL C6 H9 SING N N 45 VUL C7 H10 SING N N 46 VUL C7 H11 SING N N 47 VUL C8 H12 SING N N 48 VUL C8 H13 SING N N 49 VUL N1 H14 SING N N 50 VUL C4 H15 SING N N 51 VUL C4 H16 SING N N 52 VUL C3 H17 SING N N 53 VUL C3 H18 SING N N 54 VUL N6 H19 SING N N 55 VUL N6 H20 SING N N 56 VUL O6 H21 SING N N 57 VUL O7 H22 SING N N 58 VUL C9 H23 SING N N 59 VUL C9 H24 SING N N 60 VUL C11 H25 SING N N 61 VUL C11 H26 SING N N 62 VUL C12 H27 SING N N 63 VUL C13 H28 SING N N 64 VUL C14 H29 SING N N 65 VUL C15 H30 SING N N 66 VUL C18 H31 SING N N 67 VUL C19 H32 SING N N 68 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor VUL InChI InChI 1.06 "InChI=1S/C20H32N6O7S/c1-2-3-4-5-6-7-8-9-14(27)25-34(30,31)32-10-13-16(28)17(29)20(33-13)26-12-24-15-18(21)22-11-23-19(15)26/h11-13,16-17,20,28-29H,2-10H2,1H3,(H,25,27)(H2,21,22,23)/t13-,16-,17-,20-/m1/s1" VUL InChIKey InChI 1.06 WHJSYVVAGQVYEC-AEVYOOLXSA-N VUL SMILES_CANONICAL CACTVS 3.385 "CCCCCCCCCC(=O)N[S](=O)(=O)OC[C@H]1O[C@H]([C@H](O)[C@@H]1O)n2cnc3c(N)ncnc23" VUL SMILES CACTVS 3.385 "CCCCCCCCCC(=O)N[S](=O)(=O)OC[CH]1O[CH]([CH](O)[CH]1O)n2cnc3c(N)ncnc23" VUL SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CCCCCCCCCC(=O)NS(=O)(=O)OC[C@@H]1[C@H]([C@H]([C@@H](O1)n2cnc3c2ncnc3N)O)O" VUL SMILES "OpenEye OEToolkits" 2.0.7 "CCCCCCCCCC(=O)NS(=O)(=O)OCC1C(C(C(O1)n2cnc3c2ncnc3N)O)O" # _pdbx_chem_comp_identifier.comp_id VUL _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl ~{N}-decanoylsulfamate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site VUL "Create component" 2023-08-18 PDBJ VUL "Initial release" 2024-07-10 RCSB #