data_VV1 # _chem_comp.id VV1 _chem_comp.name "3-[(1~{S},2~{S},5~{R})-2-carboxy-3,6-diazabicyclo[3.2.0]heptan-1-yl]propyl-$l^{3}-oxidanyl-bis(oxidanyl)boranuide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C9 H18 B N2 O5" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge -1 _chem_comp.pdbx_initial_date 2020-09-16 _chem_comp.pdbx_modified_date 2021-12-01 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 245.061 _chem_comp.one_letter_code ? _chem_comp.three_letter_code VV1 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7K4J _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal VV1 N1 N1 N 0 1 N N N 13.332 3.730 25.594 0.484 -2.376 -0.275 N1 VV1 1 VV1 C4 C1 C 0 1 N N N 14.752 3.728 25.087 0.978 -1.533 -1.378 C4 VV1 2 VV1 C5 C2 C 0 1 N N S 14.325 4.587 23.883 1.237 -0.414 -0.358 C5 VV1 3 VV1 C6 C3 C 0 1 N N N 14.972 4.209 22.531 0.133 0.625 -0.154 C6 VV1 4 VV1 C7 C4 C 0 1 N N N 14.557 2.917 21.812 -1.225 -0.078 -0.101 C7 VV1 5 VV1 C8 C5 C 0 1 N N N 15.081 2.812 20.378 -2.332 0.964 0.072 C8 VV1 6 VV1 O O1 O 0 1 N N N 14.959 7.878 22.681 2.911 1.886 1.134 O VV1 7 VV1 C C6 C 0 1 N N N 15.256 7.041 23.504 2.685 1.589 -0.015 C VV1 8 VV1 O1 O2 O 0 1 N N N 16.468 6.820 23.920 2.444 2.550 -0.921 O1 VV1 9 VV1 C1 C7 C 0 1 N N S 14.241 6.111 24.234 2.673 0.141 -0.432 C1 VV1 10 VV1 C3 C8 C 0 1 N N R 12.867 4.123 24.198 1.313 -1.588 0.650 C3 VV1 11 VV1 C2 C9 C 0 1 N N N 11.946 5.338 24.053 2.811 -1.971 0.624 C2 VV1 12 VV1 N N2 N 0 1 N N N 12.836 6.544 23.945 3.496 -0.658 0.501 N VV1 13 VV1 B B1 B -1 1 N N N 14.579 1.486 19.692 -3.750 0.231 0.128 B VV1 14 VV1 O4 O3 O 0 1 N N N 13.094 1.528 19.504 -3.952 -0.460 -1.034 O4 VV1 15 VV1 O3 O4 O 0 1 N N N 14.817 0.224 20.390 -3.772 -0.637 1.184 O3 VV1 16 VV1 O2 O5 O 0 1 N N N 15.234 1.312 18.328 -4.739 1.162 0.283 O2 VV1 17 VV1 H1 H1 H 0 1 N N N 13.147 4.415 26.298 0.831 -3.320 -0.358 H1 VV1 18 VV1 H3 H3 H 0 1 N N N 15.130 2.731 24.816 1.887 -1.916 -1.840 H3 VV1 19 VV1 H4 H4 H 0 1 N N N 15.469 4.222 25.759 0.208 -1.283 -2.108 H4 VV1 20 VV1 H5 H5 H 0 1 N N N 16.056 4.140 22.707 0.303 1.158 0.781 H5 VV1 21 VV1 H6 H6 H 0 1 N N N 14.765 5.038 21.838 0.143 1.333 -0.983 H6 VV1 22 VV1 H7 H7 H 0 1 N N N 13.458 2.874 21.784 -1.386 -0.628 -1.028 H7 VV1 23 VV1 H8 H8 H 0 1 N N N 14.943 2.062 22.386 -1.243 -0.770 0.741 H8 VV1 24 VV1 H9 H9 H 0 1 N N N 16.181 2.814 20.395 -2.171 1.515 0.999 H9 VV1 25 VV1 H10 H10 H 0 1 N N N 14.721 3.675 19.799 -2.314 1.657 -0.769 H10 VV1 26 VV1 H11 H11 H 0 1 N N N 17.067 7.412 23.480 2.463 3.465 -0.607 H11 VV1 27 VV1 H12 H12 H 0 1 N N N 14.417 6.211 25.315 3.057 0.044 -1.447 H12 VV1 28 VV1 H13 H13 H 0 1 N N N 12.552 3.265 23.586 0.888 -1.411 1.638 H13 VV1 29 VV1 H14 H14 H 0 1 N N N 11.293 5.426 24.934 3.097 -2.468 1.550 H14 VV1 30 VV1 H15 H15 H 0 1 N N N 11.329 5.240 23.148 3.032 -2.604 -0.235 H15 VV1 31 VV1 H16 H16 H 0 1 N N N 12.781 6.924 23.022 3.570 -0.203 1.399 H16 VV1 32 VV1 H18 H18 H 0 1 N N N 12.671 1.636 20.347 -3.948 0.095 -1.827 H18 VV1 33 VV1 H19 H19 H 0 1 N N N 14.431 0.263 21.257 -3.635 -0.216 2.043 H19 VV1 34 VV1 H2 H2 H 0 1 N N N 16.178 1.284 18.431 -5.629 0.787 0.325 H2 VV1 35 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal VV1 O2 B SING N N 1 VV1 O4 B SING N N 2 VV1 B C8 SING N N 3 VV1 B O3 SING N N 4 VV1 C8 C7 SING N N 5 VV1 C7 C6 SING N N 6 VV1 C6 C5 SING N N 7 VV1 O C DOUB N N 8 VV1 C O1 SING N N 9 VV1 C C1 SING N N 10 VV1 C5 C3 SING N N 11 VV1 C5 C1 SING N N 12 VV1 C5 C4 SING N N 13 VV1 N C2 SING N N 14 VV1 N C1 SING N N 15 VV1 C2 C3 SING N N 16 VV1 C3 N1 SING N N 17 VV1 C4 N1 SING N N 18 VV1 N1 H1 SING N N 19 VV1 C4 H3 SING N N 20 VV1 C4 H4 SING N N 21 VV1 C6 H5 SING N N 22 VV1 C6 H6 SING N N 23 VV1 C7 H7 SING N N 24 VV1 C7 H8 SING N N 25 VV1 C8 H9 SING N N 26 VV1 C8 H10 SING N N 27 VV1 O1 H11 SING N N 28 VV1 C1 H12 SING N N 29 VV1 C3 H13 SING N N 30 VV1 C2 H14 SING N N 31 VV1 C2 H15 SING N N 32 VV1 N H16 SING N N 33 VV1 O4 H18 SING N N 34 VV1 O3 H19 SING N N 35 VV1 O2 H2 SING N N 36 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor VV1 SMILES ACDLabs 12.01 "O=C(O)C1NCC2NCC12CCC[B-](O)(O)O" VV1 InChI InChI 1.03 "InChI=1S/C9H18BN2O5/c13-8(14)7-9(2-1-3-10(15,16)17)5-12-6(9)4-11-7/h6-7,11-12,15-17H,1-5H2,(H,13,14)/q-1/t6-,7+,9-/m0/s1" VV1 InChIKey InChI 1.03 BCFOBXHGEQBWQU-OOZYFLPDSA-N VV1 SMILES_CANONICAL CACTVS 3.385 "OC(=O)[C@H]1NC[C@@H]2NC[C@]12CCC[B-](O)(O)O" VV1 SMILES CACTVS 3.385 "OC(=O)[CH]1NC[CH]2NC[C]12CCC[B-](O)(O)O" VV1 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "[B-](CCC[C@]12CN[C@H]1CN[C@@H]2C(=O)O)(O)(O)O" VV1 SMILES "OpenEye OEToolkits" 2.0.7 "[B-](CCCC12CNC1CNC2C(=O)O)(O)(O)O" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier VV1 "SYSTEMATIC NAME" ACDLabs 12.01 "{3-[(1S,2S,5R)-2-carboxy-3,6-diazabicyclo[3.2.0]heptan-1-yl]propyl}(trihydroxido)borate(1-)" VV1 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "3-[(1~{S},2~{S},5~{R})-2-carboxy-3,6-diazabicyclo[3.2.0]heptan-1-yl]propyl-tris(oxidanyl)boranuide" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site VV1 "Create component" 2020-09-16 RCSB VV1 "Initial release" 2021-12-01 RCSB VV1 "Modify charge" 2021-12-01 RCSB ##