data_VV4 # _chem_comp.id VV4 _chem_comp.name "3-[(1~{R},5~{S},8~{R})-5-carboxy-2,6-diazabicyclo[3.2.1]octan-8-yl]propyl-$l^{3}-oxidanyl-bis(oxidanyl)boranuide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C10 H20 B N2 O5" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge -1 _chem_comp.pdbx_initial_date 2020-09-16 _chem_comp.pdbx_modified_date 2021-12-01 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 259.087 _chem_comp.one_letter_code ? _chem_comp.three_letter_code VV4 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7K4H _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal VV4 C1 C1 C 0 1 N N S -12.408 7.062 26.710 -2.248 0.331 0.038 C1 VV4 1 VV4 C2 C2 C 0 1 N N N -12.334 7.159 28.248 -3.282 -0.348 0.958 C2 VV4 2 VV4 C3 C3 C 0 1 N N N -13.421 6.370 28.962 -3.328 -1.841 0.626 C3 VV4 3 VV4 O4 O1 O 0 1 N N N -11.254 2.235 20.750 4.226 -1.277 -0.300 O4 VV4 4 VV4 C7 C4 C 0 1 N N N -12.114 5.300 24.678 0.273 0.457 -0.285 C7 VV4 5 VV4 C8 C5 C 0 1 N N N -12.033 3.873 24.144 1.612 -0.107 0.196 C8 VV4 6 VV4 C9 C6 C 0 1 N N N -11.533 3.811 22.702 2.756 0.641 -0.490 C9 VV4 7 VV4 O O2 O 0 1 N N N -10.072 7.578 26.173 -3.140 2.556 -0.552 O VV4 8 VV4 C C7 C 0 1 N N N -11.246 7.902 26.119 -2.261 1.833 0.159 C VV4 9 VV4 O1 O3 O 0 1 N N N -11.654 9.003 25.554 -1.479 2.387 0.895 O1 VV4 10 VV4 C6 C8 C 0 1 N N R -12.342 5.546 26.184 -0.872 -0.290 0.401 C6 VV4 11 VV4 C5 C9 C 0 1 N N R -13.737 5.182 26.733 -1.049 -1.716 -0.192 C5 VV4 12 VV4 C4 C10 C 0 1 N N N -14.715 6.278 26.162 -1.804 -1.436 -1.513 C4 VV4 13 VV4 N1 N1 N 0 1 N N N -13.800 7.479 26.175 -2.521 -0.137 -1.342 N1 VV4 14 VV4 N N2 N 0 1 N N N -13.704 5.082 28.236 -1.984 -2.428 0.705 N VV4 15 VV4 B B1 B -1 1 N N N -11.962 2.472 22.007 4.153 0.052 0.012 B VV4 16 VV4 O3 O4 O 0 1 N N N -13.391 2.451 21.638 4.254 0.208 1.366 O3 VV4 17 VV4 O2 O5 O 0 1 N N N -11.699 1.265 22.822 5.176 0.720 -0.602 O2 VV4 18 VV4 H1 H1 H 0 1 N N N -11.356 6.776 28.574 -2.988 -0.214 1.999 H1 VV4 19 VV4 H2 H2 H 0 1 N N N -12.427 8.217 28.534 -4.264 0.094 0.793 H2 VV4 20 VV4 H3 H3 H 0 1 N N N -14.340 6.973 29.000 -3.984 -2.347 1.334 H3 VV4 21 VV4 H4 H4 H 0 1 N N N -13.089 6.143 29.986 -3.718 -1.973 -0.383 H4 VV4 22 VV4 H5 H5 H 0 1 N N N -10.317 2.234 20.909 5.050 -1.701 -0.024 H5 VV4 23 VV4 H6 H6 H 0 1 N N N -11.166 5.792 24.415 0.215 1.517 -0.037 H6 VV4 24 VV4 H7 H7 H 0 1 N N N -12.942 5.792 24.147 0.193 0.333 -1.365 H7 VV4 25 VV4 H8 H8 H 0 1 N N N -13.036 3.423 24.188 1.691 0.018 1.276 H8 VV4 26 VV4 H9 H9 H 0 1 N N N -11.344 3.298 24.780 1.669 -1.167 -0.053 H9 VV4 27 VV4 H10 H10 H 0 1 N N N -10.435 3.880 22.700 2.676 0.516 -1.570 H10 VV4 28 VV4 H11 H11 H 0 1 N N N -11.954 4.657 22.140 2.699 1.701 -0.242 H11 VV4 29 VV4 H12 H12 H 0 1 N N N -9.540 8.242 25.750 -3.110 3.516 -0.442 H12 VV4 30 VV4 H13 H13 H 0 1 N N N -11.574 5.010 26.760 -0.726 -0.326 1.481 H13 VV4 31 VV4 H14 H14 H 0 1 N N N -14.034 4.208 26.316 -0.105 -2.244 -0.328 H14 VV4 32 VV4 H15 H15 H 0 1 N N N -15.589 6.424 26.813 -1.096 -1.366 -2.339 H15 VV4 33 VV4 H16 H16 H 0 1 N N N -15.053 6.033 25.144 -2.521 -2.235 -1.704 H16 VV4 34 VV4 H17 H17 H 0 1 N N N -13.706 7.837 25.246 -2.215 0.538 -2.028 H17 VV4 35 VV4 H19 H19 H 0 1 N N N -14.594 4.744 28.542 -2.007 -3.414 0.494 H19 VV4 36 VV4 H21 H21 H 0 1 N N N -13.921 2.600 22.412 3.559 -0.240 1.866 H21 VV4 37 VV4 H22 H22 H 0 1 N N N -12.133 1.349 23.663 5.168 0.652 -1.566 H22 VV4 38 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal VV4 O4 B SING N N 1 VV4 O3 B SING N N 2 VV4 B C9 SING N N 3 VV4 B O2 SING N N 4 VV4 C9 C8 SING N N 5 VV4 C8 C7 SING N N 6 VV4 C7 C6 SING N N 7 VV4 O1 C DOUB N N 8 VV4 C O SING N N 9 VV4 C C1 SING N N 10 VV4 C4 N1 SING N N 11 VV4 C4 C5 SING N N 12 VV4 N1 C1 SING N N 13 VV4 C6 C1 SING N N 14 VV4 C6 C5 SING N N 15 VV4 C1 C2 SING N N 16 VV4 C5 N SING N N 17 VV4 N C3 SING N N 18 VV4 C2 C3 SING N N 19 VV4 C2 H1 SING N N 20 VV4 C2 H2 SING N N 21 VV4 C3 H3 SING N N 22 VV4 C3 H4 SING N N 23 VV4 O4 H5 SING N N 24 VV4 C7 H6 SING N N 25 VV4 C7 H7 SING N N 26 VV4 C8 H8 SING N N 27 VV4 C8 H9 SING N N 28 VV4 C9 H10 SING N N 29 VV4 C9 H11 SING N N 30 VV4 O H12 SING N N 31 VV4 C6 H13 SING N N 32 VV4 C5 H14 SING N N 33 VV4 C4 H15 SING N N 34 VV4 C4 H16 SING N N 35 VV4 N1 H17 SING N N 36 VV4 N H19 SING N N 37 VV4 O3 H21 SING N N 38 VV4 O2 H22 SING N N 39 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor VV4 SMILES ACDLabs 12.01 "O[B-](O)(O)CCCC1C2NCCC1(NC2)C(=O)O" VV4 InChI InChI 1.03 "InChI=1S/C10H20BN2O5/c14-9(15)10-3-5-12-8(6-13-10)7(10)2-1-4-11(16,17)18/h7-8,12-13,16-18H,1-6H2,(H,14,15)/q-1/t7-,8+,10+/m1/s1" VV4 InChIKey InChI 1.03 LAVGLMPTAZJTQK-WEDXCCLWSA-N VV4 SMILES_CANONICAL CACTVS 3.385 "OC(=O)[C@@]12CCN[C@@H](CN1)[C@H]2CCC[B-](O)(O)O" VV4 SMILES CACTVS 3.385 "OC(=O)[C]12CCN[CH](CN1)[CH]2CCC[B-](O)(O)O" VV4 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "[B-](CCC[C@@H]1[C@@H]2CN[C@]1(CCN2)C(=O)O)(O)(O)O" VV4 SMILES "OpenEye OEToolkits" 2.0.7 "[B-](CCCC1C2CNC1(CCN2)C(=O)O)(O)(O)O" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier VV4 "SYSTEMATIC NAME" ACDLabs 12.01 "{3-[(1R,5S,8R)-5-carboxy-2,6-diazabicyclo[3.2.1]octan-8-yl]propyl}(trihydroxido)borate(1-)" VV4 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "3-[(1~{R},5~{S},8~{R})-5-carboxy-2,6-diazabicyclo[3.2.1]octan-8-yl]propyl-tris(oxidanyl)boranuide" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site VV4 "Create component" 2020-09-16 RCSB VV4 "Initial release" 2021-12-01 RCSB VV4 "Modify charge" 2021-12-01 RCSB ##