data_VVH # _chem_comp.id VVH _chem_comp.name "5-[[5-[[2-[bis(fluoranyl)methyl]-3-(2,3-dihydro-1,4-benzodioxin-6-yl)phenyl]methoxy]-2-[(2-hydroxyethylamino)methyl]phenoxy]methyl]pyridine-3-carbonitrile" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C32 H29 F2 N3 O5" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-04-05 _chem_comp.pdbx_modified_date 2024-07-19 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 573.587 _chem_comp.one_letter_code ? _chem_comp.three_letter_code VVH _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8ON6 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal VVH N1 N1 N 0 1 N N N N N N -21.928 19.218 9.144 5.424 3.110 0.247 N1 VVH 1 VVH C1 C1 C 0 1 Y N N N N N -19.582 17.544 -3.348 -7.679 1.078 -0.962 C1 VVH 2 VVH O1 O1 O 0 1 N N N N N N -17.950 16.822 4.625 0.179 -0.324 -0.134 O1 VVH 3 VVH N2 N2 N 0 1 Y N N N N N -25.879 16.521 8.524 8.354 -1.900 -1.838 N2 VVH 4 VVH C2 C2 C 0 1 Y N N N N N -19.384 16.510 -4.252 -8.586 0.296 -0.258 C2 VVH 5 VVH O2 O2 O 0 1 N N N N N N -24.513 20.720 9.404 6.326 5.496 -1.124 O2 VVH 6 VVH C3 C3 C 0 1 Y N N N N N -18.656 15.381 -3.873 -8.174 -0.905 0.311 C3 VVH 7 VVH N3 N3 N 0 1 N N N N N N -26.822 11.820 8.951 9.550 -4.282 2.093 N3 VVH 8 VVH O3 O3 O 0 1 N N N N N N -21.683 16.494 7.834 4.917 -0.086 0.207 O3 VVH 9 VVH C4 C4 C 0 1 Y N N N N N -18.164 15.270 -2.579 -6.859 -1.318 0.178 C4 VVH 10 VVH O4 O4 O 0 1 N N N N N N -18.397 14.344 -4.741 -9.052 -1.687 0.998 O4 VVH 11 VVH C5 C5 C 0 1 Y N N N N N -18.384 16.285 -1.642 -5.951 -0.532 -0.527 C5 VVH 12 VVH O5 O5 O 0 1 N N N N N N -19.866 16.648 -5.539 -9.872 0.722 -0.130 O5 VVH 13 VVH C6 C6 C 0 1 Y N N N N N -19.102 17.419 -2.052 -6.369 0.669 -1.097 C6 VVH 14 VVH C7 C7 C 0 1 Y N N N N N -17.845 16.185 -0.249 -4.541 -0.972 -0.670 C7 VVH 15 VVH C8 C8 C 0 1 Y N N N N N -16.446 16.099 -0.182 -4.249 -2.206 -1.247 C8 VVH 16 VVH C9 C9 C 0 1 Y N N N N N -15.795 16.002 1.029 -2.936 -2.611 -1.377 C9 VVH 17 VVH C10 C10 C 0 1 Y N N N N N -16.527 16.019 2.203 -1.911 -1.793 -0.937 C10 VVH 18 VVH C11 C11 C 0 1 Y N N N N N -17.925 16.111 2.206 -2.195 -0.566 -0.364 C11 VVH 19 VVH C12 C12 C 0 1 Y N N N N N -18.612 16.167 0.971 -3.504 -0.150 -0.233 C12 VVH 20 VVH C13 C13 C 0 1 N N N N N N -20.126 16.235 0.947 -3.812 1.190 0.385 C13 VVH 21 VVH F1 F1 F 0 1 N N N N N N -20.558 17.506 0.786 -4.173 2.095 -0.618 F1 VVH 22 VVH F2 F2 F 0 1 N N N N N N -20.653 15.492 -0.050 -4.869 1.053 1.292 F2 VVH 23 VVH C14 C14 C 0 1 N N N N N N -18.615 16.090 3.559 -1.073 0.319 0.114 C14 VVH 24 VVH C15 C15 C 0 1 Y N N N N N -18.637 17.129 5.774 1.301 0.345 0.240 C15 VVH 25 VVH C16 C16 C 0 1 Y N N N N N -19.862 16.579 6.185 2.549 -0.220 0.030 C16 VVH 26 VVH C17 C17 C 0 1 Y N N N N N -20.481 17.018 7.359 3.692 0.466 0.412 C17 VVH 27 VVH C18 C18 C 0 1 Y N N N N N -19.920 18.068 8.110 3.584 1.716 1.005 C18 VVH 28 VVH C19 C19 C 0 1 Y N N N N N -18.706 18.624 7.653 2.339 2.277 1.214 C19 VVH 29 VVH C20 C20 C 0 1 Y N N N N N -18.066 18.155 6.511 1.199 1.598 0.829 C20 VVH 30 VVH C21 C21 C 0 1 N N N N N N -20.592 18.585 9.358 4.826 2.461 1.421 C21 VVH 31 VVH C22 C22 C 0 1 N N N N N N -22.060 20.649 9.443 6.640 3.848 0.615 C22 VVH 32 VVH C23 C23 C 0 1 N N N N N N -23.354 20.913 10.205 7.233 4.508 -0.631 C23 VVH 33 VVH C24 C24 C 0 1 N N N N N N -22.496 15.561 7.097 4.953 -1.376 -0.407 C24 VVH 34 VVH C25 C25 C 0 1 Y N N N N N -23.862 15.448 7.699 6.384 -1.824 -0.552 C25 VVH 35 VVH C26 C26 C 0 1 Y N N N N N -24.627 16.571 8.004 7.100 -1.516 -1.696 C26 VVH 36 VVH C27 C27 C 0 1 Y N N N N N -26.427 15.300 8.741 8.981 -2.589 -0.907 C27 VVH 37 VVH C28 C28 C 0 1 Y N N N N N -25.741 14.111 8.439 8.329 -2.939 0.277 C28 VVH 38 VVH C29 C29 C 0 1 Y N N N N N -24.449 14.209 7.917 6.997 -2.545 0.457 C29 VVH 39 VVH C30 C30 C 0 1 N N N N N N -26.350 12.827 8.674 9.010 -3.688 1.289 C30 VVH 40 VVH C31 C31 C 0 1 N N N N N N -18.823 14.563 -6.104 -10.265 -1.063 1.433 C31 VVH 41 VVH C32 C32 C 0 1 N N N N N N -20.026 15.402 -6.236 -10.840 -0.260 0.258 C32 VVH 42 VVH H30 H1 H 0 1 N N N N N N -22.168 19.090 8.182 5.616 2.437 -0.479 H30 VVH 43 VVH H1 H3 H 0 1 N N N N N N -20.105 18.439 -3.651 -8.002 2.006 -1.408 H1 VVH 44 VVH H20 H4 H 0 1 N N N N N N -25.290 20.896 9.922 6.638 5.956 -1.915 H20 VVH 45 VVH H2 H5 H 0 1 N N N N N N -17.606 14.391 -2.293 -6.538 -2.249 0.621 H2 VVH 46 VVH H3 H6 H 0 1 N N N N N N -19.285 18.213 -1.343 -5.668 1.278 -1.649 H3 VVH 47 VVH H4 H7 H 0 1 N N N N N N -15.869 16.109 -1.095 -5.049 -2.845 -1.591 H4 VVH 48 VVH H5 H8 H 0 1 N N N N N N -14.719 15.913 1.061 -2.708 -3.567 -1.824 H5 VVH 49 VVH H6 H9 H 0 1 N N N N N N -16.005 15.960 3.146 -0.885 -2.114 -1.041 H6 VVH 50 VVH H7 H10 H 0 1 N N N N N N -20.483 15.850 1.914 -2.930 1.559 0.909 H7 VVH 51 VVH H8 H11 H 0 1 N N N N N N -19.619 16.520 3.431 -1.183 0.500 1.183 H8 VVH 52 VVH H9 H12 H 0 1 N N N N N N -18.703 15.040 3.876 -1.106 1.268 -0.421 H9 VVH 53 VVH H10 H13 H 0 1 N N N N N N -20.330 15.810 5.589 2.631 -1.193 -0.431 H10 VVH 54 VVH H11 H14 H 0 1 N N N N N N -18.261 19.438 8.206 2.257 3.250 1.675 H11 VVH 55 VVH H12 H15 H 0 1 N N N N N N -17.127 18.589 6.199 0.227 2.041 0.989 H12 VVH 56 VVH H13 H16 H 0 1 N N N N N N -20.723 17.740 10.050 5.541 1.762 1.854 H13 VVH 57 VVH H14 H17 H 0 1 N N N N N N -19.930 19.334 9.816 4.564 3.218 2.160 H14 VVH 58 VVH H16 H18 H 0 1 N N N N N N -21.206 20.972 10.056 6.391 4.615 1.349 H16 VVH 59 VVH H17 H19 H 0 1 N N N N N N -22.071 21.217 8.501 7.368 3.159 1.043 H17 VVH 60 VVH H19 H20 H 0 1 N N N N N N -23.344 21.952 10.565 7.400 3.752 -1.398 H19 VVH 61 VVH H18 H21 H 0 1 N N N N N N -23.402 20.228 11.064 8.181 4.981 -0.375 H18 VVH 62 VVH H22 H22 H 0 1 N N N N N N -22.013 14.573 7.112 4.410 -2.089 0.213 H22 VVH 63 VVH H21 H23 H 0 1 N N N N N N -22.589 15.908 6.057 4.487 -1.322 -1.391 H21 VVH 64 VVH H23 H24 H 0 1 N N N N N N -24.196 17.543 7.815 6.624 -0.953 -2.485 H23 VVH 65 VVH H24 H25 H 0 1 N N N N N N -27.421 15.239 9.159 10.008 -2.885 -1.060 H24 VVH 66 VVH H25 H26 H 0 1 N N N N N N -23.900 13.310 7.680 6.461 -2.798 1.360 H25 VVH 67 VVH H27 H27 H 0 1 N N N N N N -19.034 13.585 -6.560 -10.980 -1.826 1.741 H27 VVH 68 VVH H26 H28 H 0 1 N N N N N N -18.001 15.052 -6.647 -10.056 -0.396 2.269 H26 VVH 69 VVH H28 H29 H 0 1 N N N N N N -20.206 15.607 -7.302 -11.761 0.234 0.567 H28 VVH 70 VVH H29 H30 H 0 1 N N N N N N -20.888 14.863 -5.816 -11.042 -0.927 -0.580 H29 VVH 71 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal VVH C32 C31 SING N N 1 VVH C32 O5 SING N N 2 VVH C31 O4 SING N N 3 VVH O5 C2 SING N N 4 VVH O4 C3 SING N N 5 VVH C2 C3 DOUB Y N 6 VVH C2 C1 SING Y N 7 VVH C3 C4 SING Y N 8 VVH C1 C6 DOUB Y N 9 VVH C4 C5 DOUB Y N 10 VVH C6 C5 SING Y N 11 VVH C5 C7 SING N N 12 VVH C7 C8 DOUB Y N 13 VVH C7 C12 SING Y N 14 VVH C8 C9 SING Y N 15 VVH F2 C13 SING N N 16 VVH F1 C13 SING N N 17 VVH C13 C12 SING N N 18 VVH C12 C11 DOUB Y N 19 VVH C9 C10 DOUB Y N 20 VVH C10 C11 SING Y N 21 VVH C11 C14 SING N N 22 VVH C14 O1 SING N N 23 VVH O1 C15 SING N N 24 VVH C15 C16 DOUB Y N 25 VVH C15 C20 SING Y N 26 VVH C16 C17 SING Y N 27 VVH C20 C19 DOUB Y N 28 VVH C24 C25 SING N N 29 VVH C24 O3 SING N N 30 VVH C17 O3 SING N N 31 VVH C17 C18 DOUB Y N 32 VVH C19 C18 SING Y N 33 VVH C25 C29 DOUB Y N 34 VVH C25 C26 SING Y N 35 VVH C29 C28 SING Y N 36 VVH C26 N2 DOUB Y N 37 VVH C18 C21 SING N N 38 VVH C28 C30 SING N N 39 VVH C28 C27 DOUB Y N 40 VVH N2 C27 SING Y N 41 VVH C30 N3 TRIP N N 42 VVH N1 C21 SING N N 43 VVH N1 C22 SING N N 44 VVH O2 C23 SING N N 45 VVH C22 C23 SING N N 46 VVH N1 H30 SING N N 47 VVH C1 H1 SING N N 48 VVH O2 H20 SING N N 49 VVH C4 H2 SING N N 50 VVH C6 H3 SING N N 51 VVH C8 H4 SING N N 52 VVH C9 H5 SING N N 53 VVH C10 H6 SING N N 54 VVH C13 H7 SING N N 55 VVH C14 H8 SING N N 56 VVH C14 H9 SING N N 57 VVH C16 H10 SING N N 58 VVH C19 H11 SING N N 59 VVH C20 H12 SING N N 60 VVH C21 H13 SING N N 61 VVH C21 H14 SING N N 62 VVH C22 H16 SING N N 63 VVH C22 H17 SING N N 64 VVH C23 H19 SING N N 65 VVH C23 H18 SING N N 66 VVH C24 H22 SING N N 67 VVH C24 H21 SING N N 68 VVH C26 H23 SING N N 69 VVH C27 H24 SING N N 70 VVH C29 H25 SING N N 71 VVH C31 H27 SING N N 72 VVH C31 H26 SING N N 73 VVH C32 H28 SING N N 74 VVH C32 H29 SING N N 75 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor VVH InChI InChI 1.06 "InChI=1S/C32H29F2N3O5/c33-32(34)31-25(2-1-3-27(31)23-5-7-28-30(13-23)40-11-10-39-28)20-41-26-6-4-24(18-36-8-9-38)29(14-26)42-19-22-12-21(15-35)16-37-17-22/h1-7,12-14,16-17,32,36,38H,8-11,18-20H2" VVH InChIKey InChI 1.06 YNAHCBRGGPSNDZ-UHFFFAOYSA-N VVH SMILES_CANONICAL CACTVS 3.385 "OCCNCc1ccc(OCc2cccc(c3ccc4OCCOc4c3)c2C(F)F)cc1OCc5cncc(c5)C#N" VVH SMILES CACTVS 3.385 "OCCNCc1ccc(OCc2cccc(c3ccc4OCCOc4c3)c2C(F)F)cc1OCc5cncc(c5)C#N" VVH SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1cc(c(c(c1)c2ccc3c(c2)OCCO3)C(F)F)COc4ccc(c(c4)OCc5cc(cnc5)C#N)CNCCO" VVH SMILES "OpenEye OEToolkits" 2.0.7 "c1cc(c(c(c1)c2ccc3c(c2)OCCO3)C(F)F)COc4ccc(c(c4)OCc5cc(cnc5)C#N)CNCCO" # _pdbx_chem_comp_identifier.comp_id VVH _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "5-[[5-[[2-[bis(fluoranyl)methyl]-3-(2,3-dihydro-1,4-benzodioxin-6-yl)phenyl]methoxy]-2-[(2-hydroxyethylamino)methyl]phenoxy]methyl]pyridine-3-carbonitrile" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site VVH "Create component" 2023-04-05 PDBE VVH "Initial release" 2024-07-24 RCSB #