data_VVW # _chem_comp.id VVW _chem_comp.name "1-[4-[(1~{R})-1-[3,5-bis(chloranyl)pyridin-4-yl]ethoxy]-5-cyano-pyridin-2-yl]-3-[6-methanoyl-5-[(4-methyl-2-oxidanylidene-piperazin-1-yl)methyl]-3-(2-morpholin-4-ylethoxy)pyridin-2-yl]urea" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C32 H35 Cl2 N9 O6" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-08-22 _chem_comp.pdbx_modified_date 2024-07-26 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 712.583 _chem_comp.one_letter_code ? _chem_comp.three_letter_code VVW _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8KH7 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal VVW C1 C1 C 0 1 N N N N N N 242.103 7.209 148.944 4.242 3.418 -0.871 C1 VVW 1 VVW O1 O1 O 0 1 N N N N N N 244.337 7.128 147.901 3.335 1.208 -0.505 O1 VVW 2 VVW O2 O2 O 0 1 N N N N N N 240.166 9.997 146.708 3.322 5.859 2.405 O2 VVW 3 VVW C10 C2 C 0 1 N N N N N N 242.108 9.272 147.922 4.701 4.155 1.391 C10 VVW 4 VVW C11 C3 C 0 1 N N N N N N 241.561 10.001 146.700 4.048 4.658 2.681 C11 VVW 5 VVW C12 C4 C 0 1 N N N N N N 239.703 8.671 146.619 2.303 5.701 1.413 C12 VVW 6 VVW C13 C5 C 0 1 N N N N N N 240.563 7.641 147.385 2.939 5.209 0.110 C13 VVW 7 VVW C14 C6 C 0 1 Y N N N N N 248.238 6.184 143.029 -2.429 -1.201 0.329 C14 VVW 8 VVW C15 C7 C 0 1 Y N N N N N 247.571 5.292 142.005 -3.681 -0.611 0.216 C15 VVW 9 VVW C16 C8 C 0 1 Y N N N N N 249.709 5.416 140.833 -4.637 -2.703 0.902 C16 VVW 10 VVW C17 C9 C 0 1 Y N N N N N 250.287 6.175 141.838 -3.343 -3.219 0.985 C17 VVW 11 VVW C18 C10 C 0 1 Y N N N N N 248.285 4.935 140.935 -4.811 -1.363 0.504 C18 VVW 12 VVW C19 C11 C 0 1 N N N N N N 246.174 6.716 144.329 -0.080 -1.044 0.039 C19 VVW 13 VVW C2 C12 C 0 1 N N N N N N 243.656 7.404 149.136 4.554 1.932 -0.685 C2 VVW 14 VVW C20 C13 C 0 1 Y N N N N N 245.120 5.240 138.259 -7.566 1.653 -1.678 C20 VVW 15 VVW C21 C14 C 0 1 Y N N N N N 244.077 6.032 137.959 -8.814 1.904 -2.220 C21 VVW 16 VVW C22 C15 C 0 1 Y N N N N N 242.955 5.516 140.027 -9.847 0.649 -0.588 C22 VVW 17 VVW C23 C16 C 0 1 Y N N N N N 244.114 4.631 140.371 -8.635 0.355 0.010 C23 VVW 18 VVW C24 C17 C 0 1 Y N N N N N 245.158 4.502 139.570 -7.468 0.864 -0.541 C24 VVW 19 VVW C25 C18 C 0 1 N N R N N N 246.310 3.598 140.011 -6.128 0.568 0.080 C25 VVW 20 VVW C26 C19 C 0 1 N N N N N N 247.253 6.562 152.530 7.523 -1.465 -1.471 C26 VVW 21 VVW C27 C20 C 0 1 N N N N N N 246.402 6.876 153.780 8.643 -0.493 -1.708 C27 VVW 22 VVW C28 C21 C 0 1 N N N N N N 246.647 9.052 153.310 9.121 -0.706 0.646 C28 VVW 23 VVW C29 C22 C 0 1 N N N N N N 247.638 8.907 152.135 7.767 -1.339 0.972 C29 VVW 24 VVW C3 C23 C 0 1 N N N N N N 250.099 6.964 147.937 3.605 -4.294 0.239 C3 VVW 25 VVW C30 C24 C 0 1 N N N N N N 246.093 8.390 155.264 10.134 1.085 -0.635 C30 VVW 26 VVW C31 C25 C 0 1 N N N N N N 246.067 2.301 139.258 -5.959 1.400 1.352 C31 VVW 27 VVW C32 C26 C 0 1 N N N N N N 250.578 5.047 139.630 -5.769 -3.523 1.212 C32 VVW 28 VVW C4 C27 C 0 1 Y N N N N N 246.456 7.035 146.813 2.285 -0.913 -0.143 C4 VVW 29 VVW C5 C28 C 0 1 Y N N N N N 245.747 7.100 148.002 3.436 -0.133 -0.326 C5 VVW 30 VVW C6 C29 C 0 1 Y N N N N N 246.457 7.153 149.296 4.680 -0.750 -0.321 C6 VVW 31 VVW C7 C30 C 0 1 Y N N N N N 247.786 7.119 149.302 4.739 -2.122 -0.135 C7 VVW 32 VVW C8 C31 C 0 1 Y N N N N N 248.558 7.006 147.965 3.553 -2.837 0.041 C8 VVW 33 VVW C9 C32 C 0 1 N N N N N N 248.615 7.159 150.620 6.067 -2.833 -0.124 C9 VVW 34 VVW N1 N1 N 0 1 N N N N N N 241.484 8.126 148.182 3.664 3.956 0.368 N1 VVW 35 VVW N2 N2 N 0 1 Y N N N N N 247.875 6.949 146.814 2.376 -2.215 0.031 N2 VVW 36 VVW N3 N3 N 0 1 Y N N N N N 249.490 6.558 142.937 -2.300 -2.467 0.702 N3 VVW 37 VVW N4 N4 N 0 1 N N N N N N 245.672 6.978 145.621 1.031 -0.302 -0.141 N4 VVW 38 VVW N5 N5 N 0 1 N N N N N N 247.561 6.551 144.194 -1.292 -0.454 0.041 N5 VVW 39 VVW N6 N6 N 0 1 Y N N N N N 242.954 6.177 138.859 -9.901 1.402 -1.668 N6 VVW 40 VVW N7 N7 N 0 1 N N N N N N 247.829 7.563 151.779 7.148 -1.852 -0.247 N7 VVW 41 VVW N8 N8 N 0 1 N N N N N N 246.770 8.097 154.232 8.945 0.238 -0.470 N8 VVW 42 VVW N9 N9 N 0 1 N N N N N N 251.277 4.838 138.765 -6.667 -4.174 1.457 N9 VVW 43 VVW O3 O3 O 0 1 N N N N N N 247.696 4.119 139.899 -6.050 -0.822 0.405 O3 VVW 44 VVW O4 O4 O 0 1 N N N N N N 245.359 6.633 143.391 0.011 -2.246 0.199 O4 VVW 45 VVW O5 O5 O 0 1 N N N N N N 247.445 5.414 152.175 6.930 -1.914 -2.429 O5 VVW 46 VVW O6 O6 O 0 1 N N N N N N 250.585 8.272 147.718 4.676 -4.854 0.344 O6 VVW 47 VVW CL1 CL1 CL 0 0 N N N N N N 244.031 3.802 141.899 -8.574 -0.638 1.433 CL1 VVW 48 VVW CL2 CL2 CL 0 0 N N N N N N 246.376 5.174 137.062 -6.139 2.312 -2.416 CL2 VVW 49 VVW H1 H1 H 0 1 N N N N N N 241.636 7.228 149.940 5.161 3.956 -1.106 H1 VVW 50 VVW H2 H2 H 0 1 N N N N N N 241.942 6.224 148.482 3.530 3.541 -1.687 H2 VVW 51 VVW H3 H3 H 0 1 N N N N N N 243.173 9.057 147.751 5.424 4.890 1.038 H3 VVW 52 VVW H4 H4 H 0 1 N N N N N N 242.003 9.931 148.796 5.208 3.209 1.584 H4 VVW 53 VVW H5 H5 H 0 1 N N N N N N 241.919 9.498 145.789 4.819 4.861 3.424 H5 VVW 54 VVW H6 H6 H 0 1 N N N N N N 241.919 11.041 146.709 3.364 3.900 3.063 H6 VVW 55 VVW H7 H7 H 0 1 N N N N N N 238.681 8.636 147.025 1.569 4.973 1.758 H7 VVW 56 VVW H8 H8 H 0 1 N N N N N N 239.686 8.383 145.557 1.813 6.660 1.240 H8 VVW 57 VVW H9 H9 H 0 1 N N N N N N 239.884 7.026 147.994 2.159 5.033 -0.631 H9 VVW 58 VVW H10 H10 H 0 1 N N N N N N 241.066 7.006 146.641 3.634 5.961 -0.263 H10 VVW 59 VVW H11 H11 H 0 1 N N N N N N 246.553 4.956 142.135 -3.774 0.419 -0.093 H11 VVW 60 VVW H12 H12 H 0 1 N N N N N N 251.325 6.467 141.781 -3.195 -4.245 1.290 H12 VVW 61 VVW H13 H13 H 0 1 N N N N N N 244.017 6.715 149.914 5.073 1.557 -1.567 H13 VVW 62 VVW H14 H14 H 0 1 N N N N N N 243.859 8.441 149.441 5.187 1.801 0.193 H14 VVW 63 VVW H15 H15 H 0 1 N N N N N N 244.077 6.573 137.024 -8.898 2.517 -3.105 H15 VVW 64 VVW H16 H16 H 0 1 N N N N N N 242.128 5.621 140.713 -10.760 0.256 -0.165 H16 VVW 65 VVW H17 H17 H 0 1 N N N N N N 246.139 3.376 141.075 -5.336 0.820 -0.626 H17 VVW 66 VVW H18 H18 H 0 1 N N N N N N 245.334 6.881 153.515 9.531 -1.036 -2.034 H18 VVW 67 VVW H19 H19 H 0 1 N N N N N N 246.584 6.119 154.557 8.350 0.215 -2.483 H19 VVW 68 VVW H20 H20 H 0 1 N N N N N N 246.819 10.025 153.792 9.495 -0.173 1.520 H20 VVW 69 VVW H21 H21 H 0 1 N N N N N N 245.624 9.018 152.908 9.830 -1.483 0.359 H21 VVW 70 VVW H22 H22 H 0 1 N N N N N N 248.606 9.339 152.430 7.911 -2.158 1.676 H22 VVW 71 VVW H23 H23 H 0 1 N N N N N N 247.243 9.453 151.266 7.115 -0.588 1.419 H23 VVW 72 VVW H24 H24 H 0 1 N N N N N N 250.707 6.080 148.064 2.690 -4.865 0.291 H24 VVW 73 VVW H26 H26 H 0 1 N N N N N N 246.204 7.594 156.015 9.984 1.760 -1.478 H26 VVW 74 VVW H27 H27 H 0 1 N N N N N N 246.455 9.341 155.682 10.294 1.667 0.273 H27 VVW 75 VVW H28 H28 H 0 1 N N N N N N 245.032 8.490 154.990 11.005 0.457 -0.822 H28 VVW 76 VVW H29 H29 H 0 1 N N N N N N 246.854 1.576 139.512 -6.751 1.148 2.059 H29 VVW 77 VVW H30 H30 H 0 1 N N N N N N 245.086 1.891 139.541 -4.990 1.185 1.802 H30 VVW 78 VVW H31 H31 H 0 1 N N N N N N 246.084 2.497 138.176 -6.018 2.460 1.104 H31 VVW 79 VVW H32 H32 H 0 1 N N N N N N 245.906 7.218 150.222 5.583 -0.173 -0.460 H32 VVW 80 VVW H33 H33 H 0 1 N N N N N N 249.023 6.155 150.807 6.178 -3.380 0.813 H33 VVW 81 VVW H34 H34 H 0 1 N N N N N N 249.442 7.873 150.492 6.113 -3.531 -0.960 H34 VVW 82 VVW H36 H36 H 0 1 N N N N N N 244.689 7.136 145.709 0.958 0.657 -0.269 H36 VVW 83 VVW H37 H37 H 0 1 N N N N N N 248.117 6.711 145.009 -1.371 0.493 -0.158 H37 VVW 84 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal VVW CL2 C20 SING N N 1 VVW C21 C20 DOUB Y N 2 VVW C21 N6 SING Y N 3 VVW C20 C24 SING Y N 4 VVW N9 C32 TRIP N N 5 VVW N6 C22 DOUB Y N 6 VVW C31 C25 SING N N 7 VVW C24 C25 SING N N 8 VVW C24 C23 DOUB Y N 9 VVW C32 C16 SING N N 10 VVW O3 C25 SING N N 11 VVW O3 C18 SING N N 12 VVW C22 C23 SING Y N 13 VVW C23 CL1 SING N N 14 VVW C16 C18 DOUB Y N 15 VVW C16 C17 SING Y N 16 VVW C18 C15 SING Y N 17 VVW C17 N3 DOUB Y N 18 VVW C15 C14 DOUB Y N 19 VVW N3 C14 SING Y N 20 VVW C14 N5 SING N N 21 VVW O4 C19 DOUB N N 22 VVW N5 C19 SING N N 23 VVW C19 N4 SING N N 24 VVW N4 C4 SING N N 25 VVW C12 O2 SING N N 26 VVW C12 C13 SING N N 27 VVW C11 O2 SING N N 28 VVW C11 C10 SING N N 29 VVW C4 N2 DOUB Y N 30 VVW C4 C5 SING Y N 31 VVW N2 C8 SING Y N 32 VVW C13 N1 SING N N 33 VVW O6 C3 DOUB N N 34 VVW O1 C5 SING N N 35 VVW O1 C2 SING N N 36 VVW C10 N1 SING N N 37 VVW C3 C8 SING N N 38 VVW C8 C7 DOUB Y N 39 VVW C5 C6 DOUB Y N 40 VVW N1 C1 SING N N 41 VVW C1 C2 SING N N 42 VVW C6 C7 SING Y N 43 VVW C7 C9 SING N N 44 VVW C9 N7 SING N N 45 VVW N7 C29 SING N N 46 VVW N7 C26 SING N N 47 VVW C29 C28 SING N N 48 VVW O5 C26 DOUB N N 49 VVW C26 C27 SING N N 50 VVW C28 N8 SING N N 51 VVW C27 N8 SING N N 52 VVW N8 C30 SING N N 53 VVW C1 H1 SING N N 54 VVW C1 H2 SING N N 55 VVW C10 H3 SING N N 56 VVW C10 H4 SING N N 57 VVW C11 H5 SING N N 58 VVW C11 H6 SING N N 59 VVW C12 H7 SING N N 60 VVW C12 H8 SING N N 61 VVW C13 H9 SING N N 62 VVW C13 H10 SING N N 63 VVW C15 H11 SING N N 64 VVW C17 H12 SING N N 65 VVW C2 H13 SING N N 66 VVW C2 H14 SING N N 67 VVW C21 H15 SING N N 68 VVW C22 H16 SING N N 69 VVW C25 H17 SING N N 70 VVW C27 H18 SING N N 71 VVW C27 H19 SING N N 72 VVW C28 H20 SING N N 73 VVW C28 H21 SING N N 74 VVW C29 H22 SING N N 75 VVW C29 H23 SING N N 76 VVW C3 H24 SING N N 77 VVW C30 H26 SING N N 78 VVW C30 H27 SING N N 79 VVW C30 H28 SING N N 80 VVW C31 H29 SING N N 81 VVW C31 H30 SING N N 82 VVW C31 H31 SING N N 83 VVW C6 H32 SING N N 84 VVW C9 H33 SING N N 85 VVW C9 H34 SING N N 86 VVW N4 H36 SING N N 87 VVW N5 H37 SING N N 88 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor VVW InChI InChI 1.06 "InChI=1S/C32H35Cl2N9O6/c1-20(30-23(33)15-36-16-24(30)34)49-26-12-28(37-14-22(26)13-35)39-32(46)40-31-27(48-10-7-42-5-8-47-9-6-42)11-21(25(19-44)38-31)17-43-4-3-41(2)18-29(43)45/h11-12,14-16,19-20H,3-10,17-18H2,1-2H3,(H2,37,38,39,40,46)/t20-/m1/s1" VVW InChIKey InChI 1.06 AEFSLXKVONEDJJ-HXUWFJFHSA-N VVW SMILES_CANONICAL CACTVS 3.385 "C[C@@H](Oc1cc(NC(=O)Nc2nc(C=O)c(CN3CCN(C)CC3=O)cc2OCCN4CCOCC4)ncc1C#N)c5c(Cl)cncc5Cl" VVW SMILES CACTVS 3.385 "C[CH](Oc1cc(NC(=O)Nc2nc(C=O)c(CN3CCN(C)CC3=O)cc2OCCN4CCOCC4)ncc1C#N)c5c(Cl)cncc5Cl" VVW SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C[C@H](c1c(cncc1Cl)Cl)Oc2cc(ncc2C#N)NC(=O)Nc3c(cc(c(n3)C=O)CN4CCN(CC4=O)C)OCCN5CCOCC5" VVW SMILES "OpenEye OEToolkits" 2.0.7 "CC(c1c(cncc1Cl)Cl)Oc2cc(ncc2C#N)NC(=O)Nc3c(cc(c(n3)C=O)CN4CCN(CC4=O)C)OCCN5CCOCC5" # _pdbx_chem_comp_identifier.comp_id VVW _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "1-[4-[(1~{R})-1-[3,5-bis(chloranyl)pyridin-4-yl]ethoxy]-5-cyano-pyridin-2-yl]-3-[6-methanoyl-5-[(4-methyl-2-oxidanylidene-piperazin-1-yl)methyl]-3-(2-morpholin-4-ylethoxy)pyridin-2-yl]urea" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site VVW "Create component" 2023-08-22 PDBJ VVW "Initial release" 2024-07-31 RCSB #