data_VW0 # _chem_comp.id VW0 _chem_comp.name "(2~{R})-2-[(2~{S},3~{R},4~{R},5~{S},6~{R})-3-acetamido-2,5-bis(oxidanyl)-6-(phosphonooxymethyl)oxan-4-yl]oxypropanoic acid" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C11 H20 N O11 P" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-04-12 _chem_comp.pdbx_modified_date 2023-09-15 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 373.250 _chem_comp.one_letter_code ? _chem_comp.three_letter_code VW0 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8C0U _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal VW0 C02 C1 C 0 1 N N S -28.409 6.426 -38.004 0.112 0.975 0.376 C02 VW0 1 VW0 C03 C2 C 0 1 N N R -28.707 6.298 -36.471 -1.225 0.444 -0.150 C03 VW0 2 VW0 C05 C3 C 0 1 N N R -30.877 5.103 -36.730 -3.347 1.515 -0.458 C05 VW0 3 VW0 C06 C4 C 0 1 N N N -32.061 4.966 -35.794 -3.035 2.862 -1.112 C06 VW0 4 VW0 C07 C5 C 0 1 N N N -30.027 3.817 -36.652 -4.650 1.611 0.293 C07 VW0 5 VW0 C10 C6 C 0 1 N N R -28.131 7.476 -35.625 -1.349 -1.040 0.209 C10 VW0 6 VW0 C12 C7 C 0 1 N N N -26.807 7.404 -33.580 -3.204 -2.619 0.243 C12 VW0 7 VW0 C13 C8 C 0 1 N N N -25.591 6.871 -32.901 -4.481 -3.172 -0.336 C13 VW0 8 VW0 C15 C9 C 0 1 N N S -27.740 8.648 -36.485 -0.153 -1.799 -0.372 C15 VW0 9 VW0 C18 C10 C 0 1 N N R -28.468 7.900 -38.521 1.252 0.138 -0.211 C18 VW0 10 VW0 C19 C11 C 0 1 N N N -29.570 8.153 -39.478 2.587 0.625 0.356 C19 VW0 11 VW0 N11 N1 N 0 1 N N N -26.999 7.021 -34.851 -2.590 -1.578 -0.353 N11 VW0 12 VW0 O01 O1 O 0 1 N N N -27.089 5.943 -38.249 0.270 2.341 -0.015 O01 VW0 13 VW0 O04 O2 O 0 1 N N N -30.145 6.306 -36.311 -2.298 1.172 0.450 O04 VW0 14 VW0 O08 O3 O 0 1 N N N -29.954 3.128 -37.693 -4.664 1.495 1.496 O08 VW0 15 VW0 O09 O4 O 0 1 N N N -29.561 3.503 -35.530 -5.795 1.824 -0.374 O09 VW0 16 VW0 O14 O5 O 0 1 N N N -27.596 8.142 -32.999 -2.729 -3.111 1.245 O14 VW0 17 VW0 O17 O6 O 0 1 N N N -28.691 8.792 -37.459 1.059 -1.235 0.134 O17 VW0 18 VW0 O20 O7 O 0 1 N N N -30.829 7.836 -38.939 3.658 -0.077 -0.278 O20 VW0 19 VW0 O22 O8 O 0 1 N N N -32.019 8.745 -36.926 5.491 -0.260 1.597 O22 VW0 20 VW0 O23 O9 O 0 1 N N N -30.960 10.332 -38.570 6.136 -0.681 -0.917 O23 VW0 21 VW0 O24 O10 O 0 1 N N N -33.013 9.014 -39.215 5.516 1.620 -0.086 O24 VW0 22 VW0 P21 P1 P 0 1 N N N -31.749 9.040 -38.388 5.207 0.182 0.075 P21 VW0 23 VW0 O02 O11 O 0 1 N N N -26.440 8.445 -37.072 -0.169 -1.695 -1.797 O02 VW0 24 VW0 H1 H1 H 0 1 N N N -29.148 5.828 -38.557 0.130 0.903 1.464 H1 VW0 25 VW0 H2 H2 H 0 1 N N N -28.283 5.352 -36.103 -1.264 0.563 -1.233 H2 VW0 26 VW0 H3 H3 H 0 1 N N N -31.242 5.227 -37.760 -3.427 0.747 -1.227 H3 VW0 27 VW0 H4 H4 H 0 1 N N N -32.674 5.878 -35.842 -2.138 2.770 -1.724 H4 VW0 28 VW0 H5 H5 H 0 1 N N N -32.668 4.100 -36.095 -3.874 3.165 -1.738 H5 VW0 29 VW0 H6 H6 H 0 1 N N N -31.700 4.820 -34.765 -2.871 3.612 -0.338 H6 VW0 30 VW0 H7 H7 H 0 1 N N N -28.923 7.806 -34.937 -1.361 -1.153 1.293 H7 VW0 31 VW0 H8 H8 H 0 1 N N N -25.555 7.244 -31.867 -5.333 -2.654 0.103 H8 VW0 32 VW0 H9 H9 H 0 1 N N N -25.628 5.772 -32.893 -4.483 -3.027 -1.416 H9 VW0 33 VW0 H10 H10 H 0 1 N N N -24.693 7.204 -33.443 -4.550 -4.237 -0.113 H10 VW0 34 VW0 H11 H11 H 0 1 N N N -27.711 9.546 -35.850 -0.213 -2.849 -0.083 H11 VW0 35 VW0 H12 H12 H 0 1 N N N -27.509 8.127 -39.010 1.258 0.243 -1.296 H12 VW0 36 VW0 H13 H13 H 0 1 N N N -29.406 7.540 -40.377 2.692 1.694 0.171 H13 VW0 37 VW0 H14 H14 H 0 1 N N N -29.561 9.218 -39.754 2.615 0.437 1.429 H14 VW0 38 VW0 H15 H15 H 0 1 N N N -26.339 6.402 -35.276 -2.970 -1.185 -1.155 H15 VW0 39 VW0 H16 H16 H 0 1 N N N -27.018 5.046 -37.945 1.097 2.742 0.285 H16 VW0 40 VW0 H17 H17 H 0 1 N N N -29.139 2.654 -35.588 -6.605 1.878 0.151 H17 VW0 41 VW0 H18 H18 H 0 1 N N N -32.949 8.596 -36.799 5.310 -1.193 1.776 H18 VW0 42 VW0 H19 H19 H 0 1 N N N -31.415 10.898 -39.183 7.084 -0.574 -0.761 H19 VW0 43 VW0 H20 H20 H 0 1 N N N -25.793 8.347 -36.383 0.562 -2.154 -2.233 H20 VW0 44 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal VW0 C19 O20 SING N N 1 VW0 C19 C18 SING N N 2 VW0 O24 P21 DOUB N N 3 VW0 O20 P21 SING N N 4 VW0 O23 P21 SING N N 5 VW0 C18 C02 SING N N 6 VW0 C18 O17 SING N N 7 VW0 P21 O22 SING N N 8 VW0 O01 C02 SING N N 9 VW0 C02 C03 SING N N 10 VW0 O08 C07 DOUB N N 11 VW0 O17 C15 SING N N 12 VW0 O02 C15 SING N N 13 VW0 C05 C07 SING N N 14 VW0 C05 O04 SING N N 15 VW0 C05 C06 SING N N 16 VW0 C07 O09 SING N N 17 VW0 C15 C10 SING N N 18 VW0 C03 O04 SING N N 19 VW0 C03 C10 SING N N 20 VW0 C10 N11 SING N N 21 VW0 N11 C12 SING N N 22 VW0 C12 O14 DOUB N N 23 VW0 C12 C13 SING N N 24 VW0 C02 H1 SING N N 25 VW0 C03 H2 SING N N 26 VW0 C05 H3 SING N N 27 VW0 C06 H4 SING N N 28 VW0 C06 H5 SING N N 29 VW0 C06 H6 SING N N 30 VW0 C10 H7 SING N N 31 VW0 C13 H8 SING N N 32 VW0 C13 H9 SING N N 33 VW0 C13 H10 SING N N 34 VW0 C15 H11 SING N N 35 VW0 C18 H12 SING N N 36 VW0 C19 H13 SING N N 37 VW0 C19 H14 SING N N 38 VW0 N11 H15 SING N N 39 VW0 O01 H16 SING N N 40 VW0 O09 H17 SING N N 41 VW0 O22 H18 SING N N 42 VW0 O23 H19 SING N N 43 VW0 O02 H20 SING N N 44 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor VW0 InChI InChI 1.06 "InChI=1S/C11H20NO11P/c1-4(10(15)16)22-9-7(12-5(2)13)11(17)23-6(8(9)14)3-21-24(18,19)20/h4,6-9,11,14,17H,3H2,1-2H3,(H,12,13)(H,15,16)(H2,18,19,20)/t4-,6-,7-,8-,9-,11+/m1/s1" VW0 InChIKey InChI 1.06 NMEMTQKUEVNSPV-MDMHTWEWSA-N VW0 SMILES_CANONICAL CACTVS 3.385 "C[C@@H](O[C@H]1[C@H](O)[C@@H](CO[P](O)(O)=O)O[C@H](O)[C@@H]1NC(C)=O)C(O)=O" VW0 SMILES CACTVS 3.385 "C[CH](O[CH]1[CH](O)[CH](CO[P](O)(O)=O)O[CH](O)[CH]1NC(C)=O)C(O)=O" VW0 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C[C@H](C(=O)O)O[C@@H]1[C@H]([C@H](O[C@@H]([C@H]1O)COP(=O)(O)O)O)NC(=O)C" VW0 SMILES "OpenEye OEToolkits" 2.0.7 "CC(C(=O)O)OC1C(C(OC(C1O)COP(=O)(O)O)O)NC(=O)C" # _pdbx_chem_comp_identifier.comp_id VW0 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(2~{R})-2-[(2~{S},3~{R},4~{R},5~{S},6~{R})-3-acetamido-2,5-bis(oxidanyl)-6-(phosphonooxymethyl)oxan-4-yl]oxypropanoic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site VW0 "Create component" 2023-04-12 PDBE VW0 "Initial release" 2023-09-20 RCSB #