data_VW5 # _chem_comp.id VW5 _chem_comp.name "dirhodium (II) oxide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "H8 O8 Rh2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 4 _chem_comp.pdbx_initial_date 2023-04-12 _chem_comp.pdbx_modified_date 2023-06-09 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 341.870 _chem_comp.one_letter_code ? _chem_comp.three_letter_code VW5 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag Y _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8OQG _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal VW5 O8 O1 O 0 1 N N N -15.978 8.737 8.593 -1.205 -1.792 0.097 O8 VW5 1 VW5 RH3 RH1 RH 2 0 N N N -17.314 9.809 7.377 -1.186 0.015 -0.003 RH3 VW5 2 VW5 O5 O2 O 0 1 N N N -20.390 10.206 7.859 1.193 1.797 -0.099 O5 VW5 3 VW5 RH4 RH2 RH 2 0 N N N -19.007 9.134 9.036 1.174 -0.010 0.001 RH4 VW5 4 VW5 O6 O3 O 0 1 N N N -17.551 8.099 10.148 1.155 -1.817 0.101 O6 VW5 5 VW5 O7 O4 O 0 1 N N N -18.697 10.879 6.208 -1.167 1.822 -0.103 O7 VW5 6 VW5 H8 H1 H 0 1 N N N -15.157 8.614 8.130 -2.093 -2.176 0.117 H8 VW5 7 VW5 H5 H2 H 0 1 N N N -21.252 10.151 8.254 2.080 2.181 -0.119 H5 VW5 8 VW5 H6 H3 H 0 1 N N N -17.956 7.704 10.911 2.034 -2.219 0.124 H6 VW5 9 VW5 H7 H4 H 0 1 N N N -18.305 11.093 5.370 -0.722 2.252 0.640 H7 VW5 10 VW5 O3 O5 O 0 1 N N N ? ? ? 2.081 -0.106 -1.562 O3 VW5 11 VW5 O1 O6 O 0 1 N N N ? ? ? -2.089 -0.062 -1.570 O1 VW5 12 VW5 O4 O7 O 0 1 N N N ? ? ? -2.093 0.111 1.560 O4 VW5 13 VW5 O2 O8 O 0 1 N N N ? ? ? 2.077 0.067 1.568 O2 VW5 14 VW5 H1 H5 H 0 1 N N N ? ? ? -2.295 -0.961 -1.862 H1 VW5 15 VW5 H2 H6 H 0 1 N N N ? ? ? 3.039 0.052 1.469 H2 VW5 16 VW5 H4 H7 H 0 1 N N N ? ? ? -3.054 0.116 1.458 H4 VW5 17 VW5 H3 H8 H 0 1 N N N ? ? ? 3.042 -0.110 -1.460 H3 VW5 18 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal VW5 O7 RH3 SING N N 1 VW5 RH3 O8 SING N N 2 VW5 RH3 RH4 SING N N 3 VW5 O5 RH4 SING N N 4 VW5 RH4 O6 SING N N 5 VW5 O8 H8 SING N N 6 VW5 O5 H5 SING N N 7 VW5 O6 H6 SING N N 8 VW5 O7 H7 SING N N 9 VW5 RH4 O3 SING N N 10 VW5 RH3 O1 SING N N 11 VW5 RH3 O4 SING N N 12 VW5 RH4 O2 SING N N 13 VW5 O1 H1 SING N N 14 VW5 O2 H2 SING N N 15 VW5 O4 H4 SING N N 16 VW5 O3 H3 SING N N 17 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor VW5 InChI InChI 1.06 InChI=1S/8H2O.2Rh/h8*1H2;;/q;;;;;;;;2*+6/p-8 VW5 InChIKey InChI 1.06 YTPCCBWWPVGKDX-UHFFFAOYSA-F VW5 SMILES_CANONICAL CACTVS 3.385 "O[Rh++](O)(O)(O)[Rh++](O)(O)(O)O" VW5 SMILES CACTVS 3.385 "O[Rh++](O)(O)(O)[Rh++](O)(O)(O)O" VW5 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "O[Rh+2](O)(O)(O)[Rh+2](O)(O)(O)O" VW5 SMILES "OpenEye OEToolkits" 2.0.7 "O[Rh+2](O)(O)(O)[Rh+2](O)(O)(O)O" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site VW5 "Create component" 2023-04-12 PDBE VW5 "Modify formula" 2023-06-02 PDBE VW5 "Initial release" 2023-06-14 RCSB #