data_VWB # _chem_comp.id VWB _chem_comp.name "5-{2-[3-oxo-3-(pyrrolidin-1-yl)propoxy]phenoxy}naphthalene-2-carbonitrile" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C24 H22 N2 O3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-09-19 _chem_comp.pdbx_modified_date 2023-11-03 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 386.443 _chem_comp.one_letter_code ? _chem_comp.three_letter_code VWB _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8U6O _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal VWB O3 O1 O 0 1 N N N N N N 47.765 -14.031 21.683 -1.801 1.639 -0.891 O3 VWB 1 VWB C24 C1 C 0 1 Y N N N N N 48.151 -12.238 26.082 -4.182 -2.183 0.873 C24 VWB 2 VWB C23 C2 C 0 1 N N N N N N 49.438 -13.506 27.845 -5.093 -3.870 -0.632 C23 VWB 3 VWB C21 C3 C 0 1 Y N N N N N 49.159 -14.335 25.507 -3.882 -1.927 -1.518 C21 VWB 4 VWB O1 O2 O 0 1 N N N N N N 43.999 -18.220 19.759 4.880 0.780 0.202 O1 VWB 5 VWB C22 C4 C 0 1 Y N N N N N 48.896 -13.348 26.432 -4.379 -2.647 -0.417 C22 VWB 6 VWB C20 C5 C 0 1 Y N N N N N 48.683 -14.218 24.218 -3.202 -0.765 -1.340 C20 VWB 7 VWB C19 C6 C 0 1 Y N N N N N 47.941 -13.112 23.860 -2.997 -0.262 -0.044 C19 VWB 8 VWB C3 C7 C 0 1 N N N N N N 46.105 -16.881 23.639 5.181 -3.766 0.375 C3 VWB 9 VWB O2 O3 O 0 1 N N N N N N 45.620 -14.323 20.045 0.902 1.362 -0.441 O2 VWB 10 VWB C1 C8 C 0 1 N N N N N N 44.189 -17.271 20.435 4.254 -0.234 -0.023 C1 VWB 11 VWB C4 C9 C 0 1 N N N N N N 45.820 -18.384 23.692 6.580 -3.156 0.094 C4 VWB 12 VWB C8 C10 C 0 1 Y N N N N N 46.779 -13.738 19.538 0.328 2.594 -0.406 C8 VWB 13 VWB C6 C11 C 0 1 N N N N N N 43.843 -15.884 19.913 2.771 -0.163 -0.279 C6 VWB 14 VWB C5 C12 C 0 1 N N N N N N 45.129 -18.687 22.363 6.321 -1.638 0.189 C5 VWB 15 VWB C2 C13 C 0 1 N N N N N N 45.043 -16.355 22.680 4.249 -2.730 -0.301 C2 VWB 16 VWB C7 C14 C 0 1 N N N N N N 45.071 -15.302 19.222 2.309 1.294 -0.198 C7 VWB 17 VWB C9 C15 C 0 1 Y N N N N N 46.841 -13.310 18.229 1.103 3.714 -0.149 C9 VWB 18 VWB C12 C16 C 0 1 Y N N N N N 49.028 -13.006 19.906 -1.617 3.992 -0.597 C12 VWB 19 VWB C11 C17 C 0 1 Y N N N N N 49.096 -12.577 18.596 -0.840 5.104 -0.335 C11 VWB 20 VWB C10 C18 C 0 1 Y N N N N N 48.003 -12.730 17.760 0.518 4.966 -0.114 C10 VWB 21 VWB C13 C19 C 0 1 Y N N N N N 47.862 -13.580 20.372 -1.038 2.734 -0.633 C13 VWB 22 VWB C14 C20 C 0 1 Y N N N N N 47.470 -13.000 22.571 -2.294 0.943 0.165 C14 VWB 23 VWB C15 C21 C 0 1 Y N N N N N 46.724 -11.901 22.201 -2.111 1.407 1.448 C15 VWB 24 VWB C16 C22 C 0 1 Y N N N N N 46.459 -10.911 23.124 -2.612 0.702 2.540 C16 VWB 25 VWB C17 C23 C 0 1 Y N N N N N 46.930 -11.017 24.419 -3.269 -0.478 2.371 C17 VWB 26 VWB C18 C24 C 0 1 Y N N N N N 47.674 -12.123 24.791 -3.487 -0.981 1.075 C18 VWB 27 VWB N1 N1 N 0 1 N N N N N N 44.759 -17.429 21.758 4.885 -1.425 -0.043 N1 VWB 28 VWB N2 N2 N 0 1 N N N N N N 49.845 -13.634 28.889 -5.659 -4.840 -0.802 N2 VWB 29 VWB H1 H1 H 0 1 N N N N N N 47.944 -11.468 26.811 -4.565 -2.739 1.716 H1 VWB 30 VWB H2 H2 H 0 1 N N N N N N 49.738 -15.201 25.792 -4.043 -2.303 -2.518 H2 VWB 31 VWB H3 H3 H 0 1 N N N N N N 48.891 -14.990 23.492 -2.827 -0.223 -2.195 H3 VWB 32 VWB H4 H4 H 0 1 N N N N N N 47.116 -16.685 23.253 5.081 -4.745 -0.093 H4 VWB 33 VWB H5 H5 H 0 1 N N N N N N 45.998 -16.425 24.634 4.989 -3.825 1.446 H5 VWB 34 VWB H6 H6 H 0 1 N N N N N N 45.160 -18.625 24.538 7.298 -3.473 0.850 H6 VWB 35 VWB H7 H7 H 0 1 N N N N N N 46.756 -18.955 23.783 6.927 -3.430 -0.903 H7 VWB 36 VWB H8 H8 H 0 1 N N N N N N 43.548 -15.236 20.751 2.554 -0.558 -1.271 H8 VWB 37 VWB H9 H9 H 0 1 N N N N N N 43.013 -15.955 19.195 2.244 -0.753 0.471 H9 VWB 38 VWB H10 H10 H 0 1 N N N N N N 44.230 -19.296 22.540 6.594 -1.276 1.180 H10 VWB 39 VWB H11 H11 H 0 1 N N N N N N 45.817 -19.233 21.700 6.903 -1.115 -0.570 H11 VWB 40 VWB H12 H12 H 0 1 N N N N N N 45.422 -15.477 22.136 4.188 -2.917 -1.373 H12 VWB 41 VWB H13 H13 H 0 1 N N N N N N 44.134 -16.078 23.234 3.256 -2.764 0.146 H13 VWB 42 VWB H14 H14 H 0 1 N N N N N N 45.810 -16.098 19.048 2.836 1.884 -0.948 H14 VWB 43 VWB H15 H15 H 0 1 N N N N N N 44.779 -14.856 18.260 2.526 1.690 0.794 H15 VWB 44 VWB H16 H16 H 0 1 N N N N N N 45.989 -13.427 17.576 2.164 3.608 0.024 H16 VWB 45 VWB H17 H17 H 0 1 N N N N N N 49.879 -12.894 20.561 -2.677 4.104 -0.773 H17 VWB 46 VWB H18 H18 H 0 1 N N N N N N 50.002 -12.122 18.223 -1.293 6.084 -0.307 H18 VWB 47 VWB H19 H19 H 0 1 N N N N N N 48.060 -12.394 16.735 1.123 5.838 0.087 H19 VWB 48 VWB H20 H20 H 0 1 N N N N N N 46.349 -11.816 21.192 -1.573 2.329 1.610 H20 VWB 49 VWB H21 H21 H 0 1 N N N N N N 45.880 -10.047 22.833 -2.456 1.085 3.537 H21 VWB 50 VWB H22 H22 H 0 1 N N N N N N 46.718 -10.240 25.138 -3.651 -1.012 3.229 H22 VWB 51 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal VWB C10 C9 DOUB Y N 1 VWB C10 C11 SING Y N 2 VWB C9 C8 SING Y N 3 VWB C11 C12 DOUB Y N 4 VWB C7 C6 SING N N 5 VWB C7 O2 SING N N 6 VWB C8 O2 SING N N 7 VWB C8 C13 DOUB Y N 8 VWB O1 C1 DOUB N N 9 VWB C12 C13 SING Y N 10 VWB C6 C1 SING N N 11 VWB C13 O3 SING N N 12 VWB C1 N1 SING N N 13 VWB O3 C14 SING N N 14 VWB N1 C5 SING N N 15 VWB N1 C2 SING N N 16 VWB C15 C14 DOUB Y N 17 VWB C15 C16 SING Y N 18 VWB C5 C4 SING N N 19 VWB C14 C19 SING Y N 20 VWB C2 C3 SING N N 21 VWB C16 C17 DOUB Y N 22 VWB C3 C4 SING N N 23 VWB C19 C20 DOUB Y N 24 VWB C19 C18 SING Y N 25 VWB C20 C21 SING Y N 26 VWB C17 C18 SING Y N 27 VWB C18 C24 DOUB Y N 28 VWB C21 C22 DOUB Y N 29 VWB C24 C22 SING Y N 30 VWB C22 C23 SING N N 31 VWB C23 N2 TRIP N N 32 VWB C24 H1 SING N N 33 VWB C21 H2 SING N N 34 VWB C20 H3 SING N N 35 VWB C3 H4 SING N N 36 VWB C3 H5 SING N N 37 VWB C4 H6 SING N N 38 VWB C4 H7 SING N N 39 VWB C6 H8 SING N N 40 VWB C6 H9 SING N N 41 VWB C5 H10 SING N N 42 VWB C5 H11 SING N N 43 VWB C2 H12 SING N N 44 VWB C2 H13 SING N N 45 VWB C7 H14 SING N N 46 VWB C7 H15 SING N N 47 VWB C9 H16 SING N N 48 VWB C12 H17 SING N N 49 VWB C11 H18 SING N N 50 VWB C10 H19 SING N N 51 VWB C15 H20 SING N N 52 VWB C16 H21 SING N N 53 VWB C17 H22 SING N N 54 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor VWB SMILES ACDLabs 12.01 "O=C(CCOc1ccccc1Oc1cccc2cc(C#N)ccc21)N1CCCC1" VWB InChI InChI 1.06 "InChI=1S/C24H22N2O3/c25-17-18-10-11-20-19(16-18)6-5-9-21(20)29-23-8-2-1-7-22(23)28-15-12-24(27)26-13-3-4-14-26/h1-2,5-11,16H,3-4,12-15H2" VWB InChIKey InChI 1.06 UTKNCYCOFRHJAD-UHFFFAOYSA-N VWB SMILES_CANONICAL CACTVS 3.385 "O=C(CCOc1ccccc1Oc2cccc3cc(ccc23)C#N)N4CCCC4" VWB SMILES CACTVS 3.385 "O=C(CCOc1ccccc1Oc2cccc3cc(ccc23)C#N)N4CCCC4" VWB SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1ccc(c(c1)OCCC(=O)N2CCCC2)Oc3cccc4c3ccc(c4)C#N" VWB SMILES "OpenEye OEToolkits" 2.0.7 "c1ccc(c(c1)OCCC(=O)N2CCCC2)Oc3cccc4c3ccc(c4)C#N" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier VWB "SYSTEMATIC NAME" ACDLabs 12.01 "5-{2-[3-oxo-3-(pyrrolidin-1-yl)propoxy]phenoxy}naphthalene-2-carbonitrile" VWB "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "5-[2-(3-oxidanylidene-3-pyrrolidin-1-yl-propoxy)phenoxy]naphthalene-2-carbonitrile" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site VWB "Create component" 2023-09-19 RCSB VWB "Initial release" 2023-11-08 RCSB #