data_VWP # _chem_comp.id VWP _chem_comp.name "N~2~-{(2S)-1-[(naphthalen-1-yl)acetyl]-2,5-dihydro-1H-pyrrole-2-carbonyl}-L-lysyl-L-argininamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C29 H40 N8 O4" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2020-09-17 _chem_comp.pdbx_modified_date 2021-04-09 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 564.679 _chem_comp.one_letter_code ? _chem_comp.three_letter_code VWP _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7K3D _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal VWP C5 C1 C 0 1 N N S -15.731 -24.837 -18.471 1.748 2.431 -1.666 C5 VWP 1 VWP C6 C2 C 0 1 N N N -15.196 -25.709 -17.682 1.091 2.966 -2.911 C6 VWP 2 VWP C7 C3 C 0 1 N N N -16.060 -27.005 -17.773 1.768 2.607 -3.966 C7 VWP 3 VWP C8 C4 C 0 1 N N N -17.105 -26.761 -18.868 2.963 1.786 -3.559 C8 VWP 4 VWP C10 C5 C 0 1 N N S -13.386 -22.709 -20.830 -1.297 1.110 0.241 C10 VWP 5 VWP N12 N1 N 0 1 N N N -14.333 -22.963 -19.734 -0.373 1.997 -0.469 N12 VWP 6 VWP C15 C6 C 0 1 N N N -15.779 -22.424 -24.381 2.237 -0.347 3.458 C15 VWP 7 VWP C17 C7 C 0 1 N N N -14.266 -21.150 -22.736 0.470 0.381 1.849 C17 VWP 8 VWP C20 C8 C 0 1 N N N -10.646 -19.257 -21.385 -5.331 2.535 1.655 C20 VWP 9 VWP C24 C9 C 0 1 N N N -7.573 -20.099 -20.986 -5.927 -0.621 -0.426 C24 VWP 10 VWP C1 C10 C 0 1 N N N -17.632 -24.878 -20.474 3.822 1.036 -1.306 C1 VWP 11 VWP C11 C11 C 0 1 N N N -12.507 -21.503 -20.524 -2.701 1.645 0.119 C11 VWP 12 VWP C16 C12 C 0 1 N N N -15.475 -21.084 -23.730 0.863 0.311 3.326 C16 VWP 13 VWP C18 C13 C 0 1 N N N -14.117 -22.595 -22.177 -0.905 1.040 1.718 C18 VWP 14 VWP C19 C14 C 0 1 N N S -10.156 -20.501 -20.737 -5.090 1.508 0.579 C19 VWP 15 VWP C23 C15 C 0 1 N N N -6.272 -20.517 -21.786 -6.926 -1.768 -0.269 C23 VWP 16 VWP C27 C16 C 0 1 N N N -5.101 -21.912 -20.278 -7.568 -3.826 -1.454 C27 VWP 17 VWP C29 C17 C 0 1 N N N -8.819 -20.971 -21.385 -6.089 0.360 0.737 C29 VWP 18 VWP C3 C18 C 0 1 N N N -14.727 -24.371 -19.579 0.797 1.518 -0.936 C3 VWP 19 VWP C31 C19 C 0 1 N N N -18.737 -25.650 -21.248 4.993 0.315 -1.922 C31 VWP 20 VWP C32 C20 C 0 1 Y N N -18.298 -25.846 -22.712 5.821 -0.319 -0.834 C32 VWP 21 VWP C33 C21 C 0 1 Y N N -17.335 -26.788 -23.062 6.905 0.333 -0.330 C33 VWP 22 VWP C34 C22 C 0 1 Y N N -16.954 -26.934 -24.409 7.682 -0.237 0.675 C34 VWP 23 VWP C35 C23 C 0 1 Y N N -17.531 -26.144 -25.370 7.380 -1.463 1.184 C35 VWP 24 VWP C36 C24 C 0 1 Y N N -18.527 -25.163 -24.992 6.269 -2.166 0.690 C36 VWP 25 VWP C37 C25 C 0 1 Y N N -18.888 -25.031 -23.695 5.475 -1.584 -0.330 C37 VWP 26 VWP C38 C26 C 0 1 Y N N -19.138 -24.334 -25.972 5.925 -3.434 1.191 C38 VWP 27 VWP C39 C27 C 0 1 Y N N -20.104 -23.386 -25.586 4.842 -4.086 0.688 C39 VWP 28 VWP C40 C28 C 0 1 Y N N -20.464 -23.257 -24.257 4.064 -3.515 -0.318 C40 VWP 29 VWP C41 C29 C 0 1 Y N N -19.876 -24.063 -23.299 4.363 -2.288 -0.824 C41 VWP 30 VWP N14 N2 N 0 1 N N N -16.739 -22.264 -25.451 2.615 -0.414 4.876 N14 VWP 31 VWP N2 N3 N 0 1 N N N -11.259 -19.339 -22.680 -6.525 3.153 1.741 N2 VWP 32 VWP N21 N4 N 0 1 N N N -11.144 -21.574 -20.963 -3.725 0.988 0.697 N21 VWP 33 VWP N25 N5 N 0 1 N N N -4.827 -20.869 -19.589 -8.510 -4.063 -0.481 N25 VWP 34 VWP N26 N6 N 0 1 N N N -4.679 -23.051 -19.890 -7.431 -4.661 -2.445 N26 VWP 35 VWP N28 N7 N 0 1 N N N -5.772 -21.820 -21.320 -6.772 -2.707 -1.382 N28 VWP 36 VWP N4 N8 N 0 1 N N N -16.907 -25.557 -19.316 2.938 1.681 -2.093 N4 VWP 37 VWP O13 O1 O 0 1 N N N -12.935 -20.564 -19.916 -2.908 2.667 -0.500 O13 VWP 38 VWP O22 O2 O 0 1 N N N -10.541 -18.223 -20.841 -4.450 2.806 2.443 O22 VWP 39 VWP O30 O3 O 0 1 N N N -17.337 -23.762 -20.796 3.673 1.034 -0.102 O30 VWP 40 VWP O9 O4 O 0 1 N N N -14.288 -25.188 -20.359 1.084 0.351 -0.769 O9 VWP 41 VWP H1 H1 H 0 1 N N N -16.146 -23.959 -17.954 2.042 3.256 -1.017 H1 VWP 42 VWP H2 H2 H 0 1 N N N -14.315 -25.567 -17.073 0.190 3.561 -2.927 H2 VWP 43 VWP H3 H3 H 0 1 N N N -15.944 -27.900 -17.180 1.509 2.861 -4.983 H3 VWP 44 VWP H4 H4 H 0 1 N N N -18.119 -26.847 -18.450 2.899 0.793 -4.003 H4 VWP 45 VWP H5 H5 H 0 1 N N N -16.980 -27.492 -19.680 3.880 2.279 -3.883 H5 VWP 46 VWP H6 H6 H 0 1 N N N -12.720 -23.581 -20.903 -1.250 0.112 -0.196 H6 VWP 47 VWP H7 H7 H 0 1 N N N -14.681 -22.236 -19.142 -0.603 2.930 -0.603 H7 VWP 48 VWP H8 H8 H 0 1 N N N -16.191 -23.108 -23.625 2.199 -1.355 3.044 H8 VWP 49 VWP H9 H9 H 0 1 N N N -14.849 -22.847 -24.790 2.976 0.241 2.913 H9 VWP 50 VWP H10 H10 H 0 1 N N N -13.344 -20.867 -23.264 1.208 0.969 1.304 H10 VWP 51 VWP H11 H11 H 0 1 N N N -14.440 -20.453 -21.903 0.431 -0.627 1.436 H11 VWP 52 VWP H12 H12 H 0 1 N N N -7.383 -20.224 -19.910 -4.913 -1.020 -0.427 H12 VWP 53 VWP H13 H13 H 0 1 N N N -7.796 -19.043 -21.199 -6.115 -0.103 -1.367 H13 VWP 54 VWP H14 H14 H 0 1 N N N -15.241 -20.355 -24.520 0.124 -0.277 3.871 H14 VWP 55 VWP H15 H15 H 0 1 N N N -16.366 -20.752 -23.177 0.901 1.319 3.740 H15 VWP 56 VWP H16 H16 H 0 1 N N N -15.125 -23.016 -22.052 -0.866 2.047 2.131 H16 VWP 57 VWP H17 H17 H 0 1 N N N -13.560 -23.189 -22.917 -1.643 0.451 2.262 H17 VWP 58 VWP H18 H18 H 0 1 N N N -10.003 -20.338 -19.660 -5.219 1.970 -0.400 H18 VWP 59 VWP H19 H19 H 0 1 N N N -5.493 -19.755 -21.633 -6.739 -2.286 0.672 H19 VWP 60 VWP H20 H20 H 0 1 N N N -6.513 -20.585 -22.857 -7.941 -1.370 -0.268 H20 VWP 61 VWP H21 H21 H 0 1 N N N -8.932 -20.932 -22.478 -7.103 0.759 0.738 H21 VWP 62 VWP H22 H22 H 0 1 N N N -8.629 -22.009 -21.073 -5.901 -0.158 1.677 H22 VWP 63 VWP H23 H23 H 0 1 N N N -19.674 -25.075 -21.220 4.629 -0.458 -2.599 H23 VWP 64 VWP H24 H24 H 0 1 N N N -18.896 -26.632 -20.778 5.606 1.025 -2.477 H24 VWP 65 VWP H25 H25 H 0 1 N N N -16.881 -27.406 -22.301 7.166 1.307 -0.717 H25 VWP 66 VWP H26 H26 H 0 1 N N N -16.209 -27.666 -24.685 8.537 0.301 1.057 H26 VWP 67 VWP H27 H27 H 0 1 N N N -17.244 -26.253 -26.405 7.994 -1.894 1.961 H27 VWP 68 VWP H28 H28 H 0 1 N N N -18.861 -24.432 -27.011 6.519 -3.889 1.971 H28 VWP 69 VWP H29 H29 H 0 1 N N N -20.566 -22.756 -26.331 4.580 -5.060 1.075 H29 VWP 70 VWP H30 H30 H 0 1 N N N -21.205 -22.526 -23.967 3.210 -4.054 -0.700 H30 VWP 71 VWP H31 H31 H 0 1 N N N -20.157 -23.966 -22.261 3.750 -1.857 -1.601 H31 VWP 72 VWP H32 H32 H 0 1 N N N -16.927 -23.154 -25.867 3.520 -0.846 4.990 H32 VWP 73 VWP H33 H33 H 0 1 N N N -17.587 -21.882 -25.083 2.595 0.501 5.299 H33 VWP 74 VWP H35 H35 H 0 1 N N N -11.600 -18.511 -23.125 -6.681 3.814 2.433 H35 VWP 75 VWP H36 H36 H 0 1 N N N -11.345 -20.224 -23.137 -7.230 2.936 1.111 H36 VWP 76 VWP H37 H37 H 0 1 N N N -10.846 -22.396 -21.449 -3.559 0.170 1.192 H37 VWP 77 VWP H38 H38 H 0 1 N N N -4.285 -20.950 -18.752 -9.072 -4.852 -0.532 H38 VWP 78 VWP H39 H39 H 0 1 N N N -5.155 -19.972 -19.887 -8.612 -3.441 0.256 H39 VWP 79 VWP H40 H40 H 0 1 N N N -4.153 -22.987 -19.042 -7.992 -5.450 -2.496 H40 VWP 80 VWP H41 H41 H 0 1 N N N -5.975 -22.644 -21.850 -6.107 -2.540 -2.069 H41 VWP 81 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal VWP C38 C39 DOUB Y N 1 VWP C38 C36 SING Y N 2 VWP C39 C40 SING Y N 3 VWP N14 C15 SING N N 4 VWP C35 C36 DOUB Y N 5 VWP C35 C34 SING Y N 6 VWP C36 C37 SING Y N 7 VWP C34 C33 DOUB Y N 8 VWP C15 C16 SING N N 9 VWP C40 C41 DOUB Y N 10 VWP C16 C17 SING N N 11 VWP C37 C41 SING Y N 12 VWP C37 C32 DOUB Y N 13 VWP C33 C32 SING Y N 14 VWP C17 C18 SING N N 15 VWP C32 C31 SING N N 16 VWP N2 C20 SING N N 17 VWP C18 C10 SING N N 18 VWP C23 N28 SING N N 19 VWP C23 C24 SING N N 20 VWP C29 C24 SING N N 21 VWP C29 C19 SING N N 22 VWP C20 O22 DOUB N N 23 VWP C20 C19 SING N N 24 VWP N28 C27 SING N N 25 VWP C31 C1 SING N N 26 VWP N21 C19 SING N N 27 VWP N21 C11 SING N N 28 VWP C10 C11 SING N N 29 VWP C10 N12 SING N N 30 VWP O30 C1 DOUB N N 31 VWP C11 O13 DOUB N N 32 VWP C1 N4 SING N N 33 VWP O9 C3 DOUB N N 34 VWP C27 N26 DOUB N N 35 VWP C27 N25 SING N N 36 VWP N12 C3 SING N N 37 VWP C3 C5 SING N N 38 VWP N4 C8 SING N N 39 VWP N4 C5 SING N N 40 VWP C8 C7 SING N N 41 VWP C5 C6 SING N N 42 VWP C7 C6 DOUB N N 43 VWP C5 H1 SING N N 44 VWP C6 H2 SING N N 45 VWP C7 H3 SING N N 46 VWP C8 H4 SING N N 47 VWP C8 H5 SING N N 48 VWP C10 H6 SING N N 49 VWP N12 H7 SING N N 50 VWP C15 H8 SING N N 51 VWP C15 H9 SING N N 52 VWP C17 H10 SING N N 53 VWP C17 H11 SING N N 54 VWP C24 H12 SING N N 55 VWP C24 H13 SING N N 56 VWP C16 H14 SING N N 57 VWP C16 H15 SING N N 58 VWP C18 H16 SING N N 59 VWP C18 H17 SING N N 60 VWP C19 H18 SING N N 61 VWP C23 H19 SING N N 62 VWP C23 H20 SING N N 63 VWP C29 H21 SING N N 64 VWP C29 H22 SING N N 65 VWP C31 H23 SING N N 66 VWP C31 H24 SING N N 67 VWP C33 H25 SING N N 68 VWP C34 H26 SING N N 69 VWP C35 H27 SING N N 70 VWP C38 H28 SING N N 71 VWP C39 H29 SING N N 72 VWP C40 H30 SING N N 73 VWP C41 H31 SING N N 74 VWP N14 H32 SING N N 75 VWP N14 H33 SING N N 76 VWP N2 H35 SING N N 77 VWP N2 H36 SING N N 78 VWP N21 H37 SING N N 79 VWP N25 H38 SING N N 80 VWP N25 H39 SING N N 81 VWP N26 H40 SING N N 82 VWP N28 H41 SING N N 83 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor VWP SMILES ACDLabs 12.01 "C1(C=CCN1C(Cc2cccc3c2cccc3)=O)C(NC(C(=O)NC(C(=O)N)CCCNC(=N)\N)CCCCN)=O" VWP InChI InChI 1.03 "InChI=1S/C29H40N8O4/c30-15-4-3-12-23(27(40)35-22(26(31)39)13-6-16-34-29(32)33)36-28(41)24-14-7-17-37(24)25(38)18-20-10-5-9-19-8-1-2-11-21(19)20/h1-2,5,7-11,14,22-24H,3-4,6,12-13,15-18,30H2,(H2,31,39)(H,35,40)(H,36,41)(H4,32,33,34)/t22-,23-,24-/m0/s1" VWP InChIKey InChI 1.03 FRFITSHXIRHPKA-HJOGWXRNSA-N VWP SMILES_CANONICAL CACTVS 3.385 "NCCCC[C@H](NC(=O)[C@@H]1C=CCN1C(=O)Cc2cccc3ccccc23)C(=O)N[C@@H](CCCNC(N)=N)C(N)=O" VWP SMILES CACTVS 3.385 "NCCCC[CH](NC(=O)[CH]1C=CCN1C(=O)Cc2cccc3ccccc23)C(=O)N[CH](CCCNC(N)=N)C(N)=O" VWP SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "[H]/N=C(/N)\NCCC[C@@H](C(=O)N)NC(=O)[C@H](CCCCN)NC(=O)[C@@H]1C=CCN1C(=O)Cc2cccc3c2cccc3" VWP SMILES "OpenEye OEToolkits" 2.0.7 "c1ccc2c(c1)cccc2CC(=O)N3CC=CC3C(=O)NC(CCCCN)C(=O)NC(CCCNC(=N)N)C(=O)N" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier VWP "SYSTEMATIC NAME" ACDLabs 12.01 "N~2~-{(2S)-1-[(naphthalen-1-yl)acetyl]-2,5-dihydro-1H-pyrrole-2-carbonyl}-L-lysyl-L-argininamide" VWP "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(2~{S})-~{N}-[(2~{S})-6-azanyl-1-[[(2~{S})-1-azanyl-5-carbamimidamido-1-oxidanylidene-pentan-2-yl]amino]-1-oxidanylidene-hexan-2-yl]-1-(2-naphthalen-1-ylethanoyl)-2,5-dihydropyrrole-2-carboxamide" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site VWP "Create component" 2020-09-17 RCSB VWP "Initial release" 2021-04-14 RCSB ##