data_VWX # _chem_comp.id VWX _chem_comp.name "[[(2~{R},3~{R},4~{R},5~{R})-4-[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl]oxy-3-oxidanyl-5-(6-oxidanylidene-1~{H}-purin-9-yl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] phosphono hydrogen phosphate" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C20 H27 N9 O20 P4" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2022-09-02 _chem_comp.pdbx_modified_date 2024-01-12 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 837.372 _chem_comp.one_letter_code ? _chem_comp.three_letter_code VWX _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8ECC _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal VWX N1 N1 N 0 1 N N N N N N 1.505 5.261 23.768 10.876 3.543 -2.484 N1 VWX 1 VWX C1 C1 C 0 1 Y N N N N N 2.332 6.297 23.891 10.551 2.199 -2.539 C1 VWX 2 VWX N2 N2 N 0 1 Y N N N N N 3.644 6.072 24.153 11.210 1.373 -3.345 N2 VWX 3 VWX C2 C2 C 0 1 Y N N N N N 4.465 7.125 24.274 10.907 0.089 -3.405 C2 VWX 4 VWX N3 N3 N 0 1 Y N N N N N 4.187 8.423 24.171 9.948 -0.445 -2.678 N3 VWX 5 VWX C3 C3 C 0 1 Y N N N N N 2.882 8.611 23.913 9.235 0.303 -1.843 C3 VWX 6 VWX C4 C4 C 0 1 Y N N N N N 1.920 7.636 23.764 9.522 1.674 -1.739 C4 VWX 7 VWX N4 N4 N 0 1 Y N N N N N 0.684 8.217 23.507 8.667 2.193 -0.825 N4 VWX 8 VWX C5 C5 C 0 1 Y N N N N N 0.915 9.508 23.500 7.896 1.250 -0.369 C5 VWX 9 VWX N5 N5 N 0 1 Y N N N N N 2.228 9.805 23.757 8.201 0.066 -0.973 N5 VWX 10 VWX C6 C6 C 0 1 N N R N N N 2.837 11.119 23.800 7.554 -1.225 -0.726 C6 VWX 11 VWX O1 O1 O 0 1 N N N N N N 1.909 12.050 24.309 6.225 -1.028 -0.195 O1 VWX 12 VWX C7 C7 C 0 1 N N R N N N 2.043 13.316 23.612 5.888 -2.272 0.458 C7 VWX 13 VWX C8 C8 C 0 1 N N N N N N 0.712 13.673 22.998 4.766 -2.053 1.474 C8 VWX 14 VWX O2 O2 O 0 1 N N N N N N 0.099 12.462 22.498 3.565 -1.694 0.788 O2 VWX 15 VWX P1 P1 P 0 1 N N N N N N -1.379 12.484 21.870 2.179 -1.389 1.548 P1 VWX 16 VWX O3 O3 O 0 1 N N N N N N -2.151 13.646 22.435 2.344 -0.071 2.458 O3 VWX 17 VWX O4 O4 O 0 1 N N N N N N -1.953 11.111 22.070 1.823 -2.540 2.407 O4 VWX 18 VWX O5 O5 O 0 1 N N N N N N -1.119 12.712 20.297 1.014 -1.148 0.463 O5 VWX 19 VWX C9 C9 C 0 1 N N R N N N 0.117 12.189 19.786 -0.356 -0.957 0.821 C9 VWX 20 VWX C10 C10 C 0 1 N N R N N N 1.001 13.330 19.278 -1.264 -1.987 0.106 C10 VWX 21 VWX O6 O6 O 0 1 N N N N N N 0.286 14.552 19.132 -0.601 -2.526 -1.040 O6 VWX 22 VWX C11 C11 C 0 1 N N R N N N 1.536 12.850 17.917 -2.501 -1.172 -0.317 C11 VWX 23 VWX C12 C12 C 0 1 N N N N N N 3.039 12.821 17.772 -3.761 -1.781 0.301 C12 VWX 24 VWX O7 O7 O 0 1 N N N N N N 3.628 12.044 18.848 -4.913 -1.091 -0.188 O7 VWX 25 VWX P2 P2 P 0 1 N N N N N N 5.221 12.055 19.054 -6.415 -1.468 0.253 P2 VWX 26 VWX O8 O8 O 0 1 N N N N N N 5.662 13.423 19.457 -6.662 -2.903 -0.014 O8 VWX 27 VWX O9 O9 O 0 1 N N N N N N 5.608 10.895 19.910 -6.602 -1.174 1.825 O9 VWX 28 VWX O10 O10 O 0 1 N N N N N N 5.777 11.771 17.576 -7.461 -0.578 -0.587 O10 VWX 29 VWX P3 P3 P 0 1 N N N N N N 7.192 11.233 17.047 -9.046 -0.668 -0.852 P3 VWX 30 VWX O11 O11 O 0 1 N N N N N N 8.240 11.521 18.072 -9.349 -1.851 -1.900 O11 VWX 31 VWX O12 O12 O 0 1 N N N N N N 7.039 9.841 16.525 -9.744 -0.948 0.423 O12 VWX 32 VWX O13 O13 O 0 1 N N N N N N 7.420 12.219 15.810 -9.570 0.730 -1.454 O13 VWX 33 VWX P4 P4 P 0 1 N N N N N N 7.451 13.824 15.709 -11.014 1.435 -1.551 P4 VWX 34 VWX O14 O14 O 0 1 N N N N N N 6.088 14.212 15.183 -10.827 2.993 -1.913 O14 VWX 35 VWX O15 O15 O 0 1 N N N N N N 7.705 14.317 17.113 -11.885 0.718 -2.700 O15 VWX 36 VWX O16 O16 O 0 1 N N N N N N 8.575 14.171 14.764 -11.712 1.311 -0.252 O16 VWX 37 VWX O17 O17 O 0 1 N N N N N N 1.012 11.512 17.719 -2.315 0.169 0.167 O17 VWX 38 VWX C13 C13 C 0 1 N N R N N N -0.108 11.321 18.549 -0.891 0.388 0.267 C13 VWX 39 VWX N6 N6 N 0 1 Y N N N N N -0.237 9.895 18.852 -0.601 1.482 1.196 N6 VWX 40 VWX C14 C14 C 0 1 Y N N N N N -1.392 9.157 18.760 -1.404 1.914 2.209 C14 VWX 41 VWX N7 N7 N 0 1 Y N N N N N -1.236 7.899 19.100 -0.834 2.903 2.833 N7 VWX 42 VWX C15 C15 C 0 1 Y N N N N N 0.108 7.800 19.439 0.364 3.164 2.259 C15 VWX 43 VWX C16 C16 C 0 1 N N N N N N 0.859 6.671 19.890 1.396 4.103 2.506 C16 VWX 44 VWX O18 O18 O 0 1 N N N N N N 0.462 5.525 20.071 1.303 4.913 3.412 O18 VWX 45 VWX N8 N8 N 0 1 N N N N N N 2.198 7.025 20.123 2.488 4.076 1.709 N8 VWX 46 VWX C17 C17 C 0 1 N N N N N N 2.717 8.253 19.952 2.581 3.170 0.703 C17 VWX 47 VWX N9 N9 N 0 1 N N N N N N 2.044 9.299 19.541 1.641 2.299 0.463 N9 VWX 48 VWX C18 C18 C 0 1 Y N N N N N 0.733 9.025 19.295 0.528 2.255 1.210 C18 VWX 49 VWX C19 C19 C 0 1 N N S N N N 3.204 13.120 22.626 7.187 -2.707 1.172 C19 VWX 50 VWX O19 O19 O 0 1 N N N N N N 4.451 13.505 23.185 7.342 -4.126 1.107 O19 VWX 51 VWX C20 C20 C 0 1 N N R N N N 3.212 11.608 22.408 8.308 -2.003 0.375 C20 VWX 52 VWX O20 O20 O 0 1 N N N N N N 4.474 11.103 22.033 9.190 -2.965 -0.206 O20 VWX 53 VWX H1 H1 H 0 1 N N N N N N 2.014 4.410 23.897 11.591 3.892 -3.038 H1 VWX 54 VWX H2 H2 H 0 1 N N N N N N 0.784 5.326 24.458 10.385 4.137 -1.894 H2 VWX 55 VWX H3 H3 H 0 1 N N N N N N 5.497 6.887 24.485 11.468 -0.547 -4.074 H3 VWX 56 VWX H4 H4 H 0 1 N N N N N N 0.156 10.253 23.313 7.121 1.386 0.371 H4 VWX 57 VWX H5 H5 H 0 1 N N N N N N 3.741 11.094 24.426 7.512 -1.810 -1.645 H5 VWX 58 VWX H6 H6 H 0 1 N N N N N N 2.324 14.102 24.328 5.591 -3.019 -0.279 H6 VWX 59 VWX H7 H7 H 0 1 N N N N N N 0.863 14.382 22.170 4.602 -2.971 2.038 H7 VWX 60 VWX H8 H8 H 0 1 N N N N N N 0.063 14.131 23.759 5.047 -1.252 2.158 H8 VWX 61 VWX H9 H9 H 0 1 N N N N N N -2.937 13.327 22.862 2.578 0.724 1.960 H9 VWX 62 VWX H10 H10 H 0 1 N N N N N N 0.654 11.614 20.554 -0.485 -1.010 1.903 H10 VWX 63 VWX H11 H11 H 0 1 N N N N N N 1.848 13.460 19.967 -1.549 -2.786 0.791 H11 VWX 64 VWX H12 H12 H 0 1 N N N N N N -0.037 14.834 19.980 -1.125 -3.178 -1.526 H12 VWX 65 VWX H13 H13 H 0 1 N N N N N N 1.128 13.514 17.140 -2.587 -1.165 -1.403 H13 VWX 66 VWX H14 H14 H 0 1 N N N N N N 3.303 12.364 16.807 -3.826 -2.835 0.029 H14 VWX 67 VWX H15 H15 H 0 1 N N N N N N 3.428 13.849 17.810 -3.716 -1.688 1.386 H15 VWX 68 VWX H16 H16 H 0 1 N N N N N N 6.119 11.203 20.649 -6.455 -0.251 2.073 H16 VWX 69 VWX H17 H17 H 0 1 N N N N N N 8.711 10.722 18.277 -8.923 -1.734 -2.760 H17 VWX 70 VWX H18 H18 H 0 1 N N N N N N 6.181 14.616 14.328 -11.658 3.482 -1.988 H18 VWX 71 VWX H19 H19 H 0 1 N N N N N N 8.542 14.764 17.145 -11.487 0.761 -3.580 H19 VWX 72 VWX H20 H20 H 0 1 N N N N N N -1.019 11.669 18.041 -0.465 0.596 -0.715 H20 VWX 73 VWX H21 H21 H 0 1 N N N N N N -2.336 9.572 18.439 -2.369 1.497 2.457 H21 VWX 74 VWX H22 H22 H 0 1 N N N N N N 2.815 6.305 20.442 3.208 4.708 1.856 H22 VWX 75 VWX H23 H23 H 0 1 N N N N N N 3.766 8.387 20.170 3.464 3.169 0.081 H23 VWX 76 VWX H24 H24 H 0 1 N N N N N N 2.995 13.643 21.681 7.183 -2.371 2.209 H24 VWX 77 VWX H25 H25 H 0 1 N N N N N N 4.459 14.444 23.326 8.142 -4.454 1.541 H25 VWX 78 VWX H26 H26 H 0 1 N N N N N N 2.430 11.328 21.686 8.859 -1.316 1.018 H26 VWX 79 VWX H27 H27 H 0 1 N N N N N N 4.416 10.162 21.912 9.644 -3.522 0.441 H27 VWX 80 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal VWX O16 P4 DOUB N N 1 VWX O14 P4 SING N N 2 VWX P4 O13 SING N N 3 VWX P4 O15 SING N N 4 VWX O13 P3 SING N N 5 VWX O12 P3 DOUB N N 6 VWX P3 O10 SING N N 7 VWX P3 O11 SING N N 8 VWX O10 P2 SING N N 9 VWX O17 C11 SING N N 10 VWX O17 C13 SING N N 11 VWX C12 C11 SING N N 12 VWX C12 O7 SING N N 13 VWX C11 C10 SING N N 14 VWX C13 N6 SING N N 15 VWX C13 C9 SING N N 16 VWX C14 N6 SING Y N 17 VWX C14 N7 DOUB Y N 18 VWX O7 P2 SING N N 19 VWX N6 C18 SING Y N 20 VWX P2 O8 DOUB N N 21 VWX P2 O9 SING N N 22 VWX N7 C15 SING Y N 23 VWX O6 C10 SING N N 24 VWX C10 C9 SING N N 25 VWX C18 C15 DOUB Y N 26 VWX C18 N9 SING N N 27 VWX C15 C16 SING N N 28 VWX N9 C17 DOUB N N 29 VWX C9 O5 SING N N 30 VWX C16 O18 DOUB N N 31 VWX C16 N8 SING N N 32 VWX C17 N8 SING N N 33 VWX O5 P1 SING N N 34 VWX P1 O4 DOUB N N 35 VWX P1 O3 SING N N 36 VWX P1 O2 SING N N 37 VWX O20 C20 SING N N 38 VWX C20 C19 SING N N 39 VWX C20 C6 SING N N 40 VWX O2 C8 SING N N 41 VWX C19 O19 SING N N 42 VWX C19 C7 SING N N 43 VWX C8 C7 SING N N 44 VWX C5 N4 DOUB Y N 45 VWX C5 N5 SING Y N 46 VWX N4 C4 SING Y N 47 VWX C7 O1 SING N N 48 VWX N5 C6 SING N N 49 VWX N5 C3 SING Y N 50 VWX C4 C1 DOUB Y N 51 VWX C4 C3 SING Y N 52 VWX N1 C1 SING N N 53 VWX C6 O1 SING N N 54 VWX C1 N2 SING Y N 55 VWX C3 N3 DOUB Y N 56 VWX N2 C2 DOUB Y N 57 VWX N3 C2 SING Y N 58 VWX N1 H1 SING N N 59 VWX N1 H2 SING N N 60 VWX C2 H3 SING N N 61 VWX C5 H4 SING N N 62 VWX C6 H5 SING N N 63 VWX C7 H6 SING N N 64 VWX C8 H7 SING N N 65 VWX C8 H8 SING N N 66 VWX O3 H9 SING N N 67 VWX C9 H10 SING N N 68 VWX C10 H11 SING N N 69 VWX O6 H12 SING N N 70 VWX C11 H13 SING N N 71 VWX C12 H14 SING N N 72 VWX C12 H15 SING N N 73 VWX O9 H16 SING N N 74 VWX O11 H17 SING N N 75 VWX O14 H18 SING N N 76 VWX O15 H19 SING N N 77 VWX C13 H20 SING N N 78 VWX C14 H21 SING N N 79 VWX N8 H22 SING N N 80 VWX C17 H23 SING N N 81 VWX C19 H24 SING N N 82 VWX O19 H25 SING N N 83 VWX C20 H26 SING N N 84 VWX O20 H27 SING N N 85 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor VWX InChI InChI 1.06 "InChI=1S/C20H27N9O20P4/c21-15-9-16(23-3-22-15)28(5-26-9)19-13(32)11(30)7(45-19)1-43-51(37,38)47-14-12(31)8(2-44-52(39,40)49-53(41,42)48-50(34,35)36)46-20(14)29-6-27-10-17(29)24-4-25-18(10)33/h3-8,11-14,19-20,30-32H,1-2H2,(H,37,38)(H,39,40)(H,41,42)(H2,21,22,23)(H,24,25,33)(H2,34,35,36)/t7-,8-,11-,12-,13-,14-,19-,20-/m1/s1" VWX InChIKey InChI 1.06 SWVKSPSEHJCWAI-XPWFQUROSA-N VWX SMILES_CANONICAL CACTVS 3.385 "Nc1ncnc2n(cnc12)[C@@H]3O[C@H](CO[P](O)(=O)O[C@@H]4[C@H](O)[C@@H](CO[P](O)(=O)O[P](O)(=O)O[P](O)(O)=O)O[C@H]4n5cnc6C(=O)NC=Nc56)[C@@H](O)[C@H]3O" VWX SMILES CACTVS 3.385 "Nc1ncnc2n(cnc12)[CH]3O[CH](CO[P](O)(=O)O[CH]4[CH](O)[CH](CO[P](O)(=O)O[P](O)(=O)O[P](O)(O)=O)O[CH]4n5cnc6C(=O)NC=Nc56)[CH](O)[CH]3O" VWX SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1nc(c2c(n1)n(cn2)[C@H]3[C@@H]([C@@H]([C@H](O3)COP(=O)(O)O[C@@H]4[C@@H]([C@H](O[C@H]4n5cnc6c5N=CNC6=O)COP(=O)(O)OP(=O)(O)OP(=O)(O)O)O)O)O)N" VWX SMILES "OpenEye OEToolkits" 2.0.7 "c1nc(c2c(n1)n(cn2)C3C(C(C(O3)COP(=O)(O)OC4C(C(OC4n5cnc6c5N=CNC6=O)COP(=O)(O)OP(=O)(O)OP(=O)(O)O)O)O)O)N" # _pdbx_chem_comp_identifier.comp_id VWX _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "[[(2~{R},3~{R},4~{R},5~{R})-4-[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl]oxy-3-oxidanyl-5-(6-oxidanylidene-1~{H}-purin-9-yl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] phosphono hydrogen phosphate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site VWX "Create component" 2022-09-02 RCSB VWX "Initial release" 2024-01-17 RCSB #