data_VX9 # _chem_comp.id VX9 _chem_comp.name "4-[[(2~{S},4~{a}~{R},6~{S},8~{a}~{S})-6-[(4~{S},5~{R})-4-[(2~{S})-butan-2-yl]-5,9-dimethyl-decyl]-4~{a}-methyl-2,3,4,5,6,7,8,8~{a}-octahydro-1~{H}-naphthalen-2-yl]oxy]-4-oxidanylidene-butanoic acid" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C31 H56 O4" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-09-02 _chem_comp.pdbx_modified_date 2024-04-05 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 492.774 _chem_comp.one_letter_code ? _chem_comp.three_letter_code VX9 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8INZ _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal VX9 CAA C1 C 0 1 N N N N N N 177.915 159.242 160.154 -5.569 -5.459 -1.401 CAA VX9 1 VX9 CAB C2 C 0 1 N N N N N N 178.550 159.064 161.560 -5.896 -5.270 0.082 CAB VX9 2 VX9 CAC C3 C 0 1 N N N N N N 178.109 157.706 162.237 -5.382 -6.473 0.876 CAC VX9 3 VX9 CAD C4 C 0 1 N N N N N N 178.147 160.272 162.473 -5.222 -3.995 0.594 CAD VX9 4 VX9 CAE C5 C 0 1 N N N N N N 176.615 160.193 162.870 -5.826 -2.780 -0.112 CAE VX9 5 VX9 CAF C6 C 0 1 N N N N N N 176.453 160.139 164.437 -5.152 -1.505 0.400 CAF VX9 6 VX9 CAG C7 C 0 1 N N R N N N 175.359 161.101 164.949 -5.756 -0.290 -0.307 CAG VX9 7 VX9 CAH C8 C 0 1 N N N N N N 174.355 160.261 165.686 -7.229 -0.153 0.083 CAH VX9 8 VX9 CAI C9 C 0 1 N N S N N N 176.008 162.123 165.928 -4.999 0.972 0.112 CAI VX9 9 VX9 CAJ C10 C 0 1 N N N N N N 177.557 162.553 165.634 -3.542 0.867 -0.343 CAJ VX9 10 VX9 CAK C11 C 0 1 N N N N N N 177.706 164.070 166.270 -2.752 2.061 0.196 CAK VX9 11 VX9 CAL C12 C 0 1 N N N N N N 176.585 164.159 167.032 -1.324 2.017 -0.352 CAL VX9 12 VX9 CAM C13 C 0 1 N N S N N N 175.326 163.292 166.275 -5.648 2.196 -0.537 CAM VX9 13 VX9 CAN C14 C 0 1 N N N N N N 175.339 163.925 164.812 -6.052 1.857 -1.974 CAN VX9 14 VX9 CAO C15 C 0 1 N N N N N N 173.892 163.875 166.011 -6.891 2.597 0.261 CAO VX9 15 VX9 CAP C16 C 0 1 N N N N N N 173.625 165.273 166.630 -6.469 3.092 1.646 CAP VX9 16 VX9 CAQ C17 C 0 1 N N N N N N 174.679 165.767 167.906 0.729 3.408 -0.654 CAQ VX9 17 VX9 CAR C18 C 0 1 N N S N N N 176.211 165.610 167.573 -0.534 3.211 0.186 CAR VX9 18 VX9 CAS C19 C 0 1 N N N N N N 176.890 166.803 166.803 -0.142 2.949 1.642 CAS VX9 19 VX9 CAT C20 C 0 1 N N N N N N 176.410 168.177 167.324 0.723 1.689 1.718 CAT VX9 20 VX9 CAU C21 C 0 1 N N S N N N 175.585 168.140 168.665 1.986 1.886 0.878 CAU VX9 21 VX9 CAV C22 C 0 1 N N N N N N 175.204 169.532 169.311 2.851 0.626 0.954 CAV VX9 22 VX9 CAW C23 C 0 1 N N R N N N 174.405 167.115 168.693 1.594 2.148 -0.578 CAW VX9 23 VX9 CAX C24 C 0 1 N N N N N N 173.588 167.850 167.540 0.804 0.954 -1.117 CAX VX9 24 VX9 CAY C25 C 0 1 N N N N N N 173.021 167.463 169.360 2.858 2.345 -1.418 CAY VX9 25 VX9 CAZ C26 C 0 1 N N N N N N 173.078 168.637 170.410 3.722 1.085 -1.342 CAZ VX9 26 VX9 CBA C27 C 0 1 N N S N N N 174.473 169.264 170.680 4.114 0.823 0.113 CBA VX9 27 VX9 CBC C28 C 0 1 N N N N N N 175.160 170.419 172.566 6.262 -0.208 0.072 CBC VX9 28 VX9 CBE C29 C 0 1 N N N N N N 174.600 170.868 173.936 7.178 -1.404 0.137 CBE VX9 29 VX9 CBF C30 C 0 1 N N N N N N 174.992 172.304 174.301 8.628 -0.944 -0.018 CBF VX9 30 VX9 CBG C31 C 0 1 N N N N N N 176.510 172.517 174.278 9.544 -2.139 0.047 CBG VX9 31 VX9 OBB O1 O 0 1 N N N N N N 174.321 170.435 171.410 4.935 -0.373 0.186 OBB VX9 32 VX9 OBD O2 O 0 1 N N N N N N 176.297 170.033 172.459 6.723 0.898 -0.083 OBD VX9 33 VX9 OBH O3 O 0 1 N N N N N N 177.054 173.244 173.413 9.083 -3.245 0.202 OBH VX9 34 VX9 OBI O4 O 0 1 N N N N N N 177.268 171.959 175.109 10.871 -1.975 -0.067 OBI VX9 35 VX9 H1 H1 H 0 1 N N N N N N 178.247 160.197 159.719 -4.490 -5.543 -1.527 H1 VX9 36 VX9 H2 H2 H 0 1 N N N N N N 178.230 158.414 159.502 -6.049 -6.367 -1.765 H2 VX9 37 VX9 H3 H3 H 0 1 N N N N N N 176.819 159.242 160.244 -5.936 -4.602 -1.966 H3 VX9 38 VX9 H4 H4 H 0 1 N N N N N N 179.645 159.058 161.453 -6.976 -5.186 0.208 H4 VX9 39 VX9 H5 H5 H 0 1 N N N N N N 178.579 157.620 163.228 -4.302 -6.557 0.749 H5 VX9 40 VX9 H6 H6 H 0 1 N N N N N N 177.015 157.690 162.348 -5.615 -6.338 1.932 H6 VX9 41 VX9 H7 H7 H 0 1 N N N N N N 178.426 156.862 161.606 -5.862 -7.381 0.511 H7 VX9 42 VX9 H8 H8 H 0 1 N N N N N N 178.758 160.252 163.388 -5.381 -3.907 1.669 H8 VX9 43 VX9 H9 H9 H 0 1 N N N N N N 178.331 161.211 161.930 -4.153 -4.041 0.387 H9 VX9 44 VX9 H10 H10 H 0 1 N N N N N N 176.094 161.081 162.483 -5.668 -2.868 -1.187 H10 VX9 45 VX9 H11 H11 H 0 1 N N N N N N 176.173 159.287 162.429 -6.895 -2.734 0.094 H11 VX9 46 VX9 H12 H12 H 0 1 N N N N N N 176.186 159.113 164.729 -5.311 -1.417 1.474 H12 VX9 47 VX9 H13 H13 H 0 1 N N N N N N 177.411 160.415 164.901 -4.083 -1.551 0.193 H13 VX9 48 VX9 H14 H14 H 0 1 N N N N N N 174.888 161.629 164.106 -5.677 -0.420 -1.386 H14 VX9 49 VX9 H15 H15 H 0 1 N N N N N N 173.551 160.904 166.072 -7.696 0.621 -0.525 H15 VX9 50 VX9 H16 H16 H 0 1 N N N N N N 173.929 159.513 165.001 -7.739 -1.102 -0.083 H16 VX9 51 VX9 H17 H17 H 0 1 N N N N N N 174.850 159.750 166.525 -7.303 0.118 1.136 H17 VX9 52 VX9 H18 H18 H 0 1 N N N N N N 176.090 161.556 166.867 -5.034 1.074 1.196 H18 VX9 53 VX9 H19 H19 H 0 1 N N N N N N 178.252 161.857 166.127 -3.108 -0.058 0.038 H19 VX9 54 VX9 H20 H20 H 0 1 N N N N N N 177.756 162.566 164.552 -3.500 0.865 -1.432 H20 VX9 55 VX9 H21 H21 H 0 1 N N N N N N 178.615 164.161 166.882 -3.233 2.987 -0.119 H21 VX9 56 VX9 H22 H22 H 0 1 N N N N N N 177.717 164.837 165.481 -2.724 2.017 1.284 H22 VX9 57 VX9 H23 H23 H 0 1 N N N N N N 175.740 163.799 166.427 -0.842 1.091 -0.038 H23 VX9 58 VX9 H24 H24 H 0 1 N N N N N N 176.719 163.501 167.903 -1.351 2.060 -1.441 H24 VX9 59 VX9 H25 H25 H 0 1 N N N N N N 175.884 163.932 166.975 -4.938 3.023 -0.545 H25 VX9 60 VX9 H26 H26 H 0 1 N N N N N N 174.832 164.901 164.830 -6.830 1.094 -1.962 H26 VX9 61 VX9 H27 H27 H 0 1 N N N N N N 176.379 164.058 164.479 -6.430 2.753 -2.466 H27 VX9 62 VX9 H28 H28 H 0 1 N N N N N N 174.815 163.253 164.117 -5.184 1.483 -2.516 H28 VX9 63 VX9 H29 H29 H 0 1 N N N N N N 173.750 163.952 164.923 -7.418 3.393 -0.265 H29 VX9 64 VX9 H30 H30 H 0 1 N N N N N N 173.156 163.172 166.428 -7.548 1.734 0.368 H30 VX9 65 VX9 H31 H31 H 0 1 N N N N N N 172.600 165.591 166.390 -5.870 2.326 2.139 H31 VX9 66 VX9 H32 H32 H 0 1 N N N N N N 173.746 165.220 167.722 -5.880 4.003 1.542 H32 VX9 67 VX9 H33 H33 H 0 1 N N N N N N 174.340 165.999 166.217 -7.357 3.299 2.243 H33 VX9 68 VX9 H34 H34 H 0 1 N N N N N N 174.106 165.775 166.967 0.450 3.595 -1.691 H34 VX9 69 VX9 H35 H35 H 0 1 N N N N N N 174.356 164.917 168.525 1.292 4.259 -0.271 H35 VX9 70 VX9 H36 H36 H 0 1 N N N N N N 176.690 165.640 168.563 -1.150 4.109 0.132 H36 VX9 71 VX9 H37 H37 H 0 1 N N N N N N 177.980 166.735 166.933 0.421 3.800 2.026 H37 VX9 72 VX9 H38 H38 H 0 1 N N N N N N 176.643 166.722 165.734 -1.042 2.809 2.241 H38 VX9 73 VX9 H39 H39 H 0 1 N N N N N N 177.297 168.806 167.488 1.002 1.502 2.755 H39 VX9 74 VX9 H40 H40 H 0 1 N N N N N N 175.776 168.632 166.548 0.160 0.838 1.334 H40 VX9 75 VX9 H41 H41 H 0 1 N N N N N N 176.301 167.719 169.386 2.549 2.737 1.261 H41 VX9 76 VX9 H42 H42 H 0 1 N N N N N N 176.116 170.122 169.486 3.130 0.439 1.991 H42 VX9 77 VX9 H43 H43 H 0 1 N N N N N N 174.535 170.084 168.635 2.288 -0.225 0.570 H43 VX9 78 VX9 H44 H44 H 0 1 N N N N N N 173.284 168.849 167.885 0.009 1.310 -1.771 H44 VX9 79 VX9 H45 H45 H 0 1 N N N N N N 174.222 167.948 166.647 1.472 0.300 -1.678 H45 VX9 80 VX9 H46 H46 H 0 1 N N N N N N 172.693 167.260 167.292 0.369 0.401 -0.284 H46 VX9 81 VX9 H47 H47 H 0 1 N N N N N N 172.318 167.748 168.564 2.578 2.532 -2.455 H47 VX9 82 VX9 H48 H48 H 0 1 N N N N N N 172.650 166.562 169.871 3.420 3.196 -1.035 H48 VX9 83 VX9 H49 H49 H 0 1 N N N N N N 172.416 169.439 170.050 3.159 0.234 -1.726 H49 VX9 84 VX9 H50 H50 H 0 1 N N N N N N 172.697 168.248 171.366 4.622 1.225 -1.941 H50 VX9 85 VX9 H51 H51 H 0 1 N N N N N N 175.072 168.535 171.246 4.677 1.674 0.497 H51 VX9 86 VX9 H52 H52 H 0 1 N N N N N N 173.502 170.801 173.905 7.056 -1.903 1.099 H52 VX9 87 VX9 H53 H53 H 0 1 N N N N N N 174.987 170.191 174.712 6.928 -2.097 -0.666 H53 VX9 88 VX9 H54 H54 H 0 1 N N N N N N 174.527 172.992 173.579 8.750 -0.445 -0.980 H54 VX9 89 VX9 H55 H55 H 0 1 N N N N N N 174.619 172.526 175.312 8.878 -0.251 0.785 H55 VX9 90 VX9 H56 H56 H 0 1 N N N N N N 178.169 172.198 174.927 11.418 -2.771 -0.019 H56 VX9 91 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal VX9 CAA CAB SING N N 1 VX9 CAB CAC SING N N 2 VX9 CAB CAD SING N N 3 VX9 CAD CAE SING N N 4 VX9 CAE CAF SING N N 5 VX9 CAF CAG SING N N 6 VX9 CAG CAH SING N N 7 VX9 CAG CAI SING N N 8 VX9 CAI CAJ SING N N 9 VX9 CAI CAM SING N N 10 VX9 CAJ CAK SING N N 11 VX9 CAK CAL SING N N 12 VX9 CAL CAR SING N N 13 VX9 CAM CAN SING N N 14 VX9 CAM CAO SING N N 15 VX9 CAO CAP SING N N 16 VX9 CAQ CAR SING N N 17 VX9 CAQ CAW SING N N 18 VX9 CAR CAS SING N N 19 VX9 CAS CAT SING N N 20 VX9 CAT CAU SING N N 21 VX9 CAU CAV SING N N 22 VX9 CAU CAW SING N N 23 VX9 CAV CBA SING N N 24 VX9 CAW CAX SING N N 25 VX9 CAW CAY SING N N 26 VX9 CAY CAZ SING N N 27 VX9 CAZ CBA SING N N 28 VX9 CBA OBB SING N N 29 VX9 CBC CBE SING N N 30 VX9 CBC OBB SING N N 31 VX9 CBC OBD DOUB N N 32 VX9 CBE CBF SING N N 33 VX9 CBF CBG SING N N 34 VX9 CBG OBH DOUB N N 35 VX9 CBG OBI SING N N 36 VX9 CAA H1 SING N N 37 VX9 CAA H2 SING N N 38 VX9 CAA H3 SING N N 39 VX9 CAB H4 SING N N 40 VX9 CAC H5 SING N N 41 VX9 CAC H6 SING N N 42 VX9 CAC H7 SING N N 43 VX9 CAD H8 SING N N 44 VX9 CAD H9 SING N N 45 VX9 CAE H10 SING N N 46 VX9 CAE H11 SING N N 47 VX9 CAF H12 SING N N 48 VX9 CAF H13 SING N N 49 VX9 CAG H14 SING N N 50 VX9 CAH H15 SING N N 51 VX9 CAH H16 SING N N 52 VX9 CAH H17 SING N N 53 VX9 CAI H18 SING N N 54 VX9 CAJ H19 SING N N 55 VX9 CAJ H20 SING N N 56 VX9 CAK H21 SING N N 57 VX9 CAK H22 SING N N 58 VX9 CAL H23 SING N N 59 VX9 CAL H24 SING N N 60 VX9 CAM H25 SING N N 61 VX9 CAN H26 SING N N 62 VX9 CAN H27 SING N N 63 VX9 CAN H28 SING N N 64 VX9 CAO H29 SING N N 65 VX9 CAO H30 SING N N 66 VX9 CAP H31 SING N N 67 VX9 CAP H32 SING N N 68 VX9 CAP H33 SING N N 69 VX9 CAQ H34 SING N N 70 VX9 CAQ H35 SING N N 71 VX9 CAR H36 SING N N 72 VX9 CAS H37 SING N N 73 VX9 CAS H38 SING N N 74 VX9 CAT H39 SING N N 75 VX9 CAT H40 SING N N 76 VX9 CAU H41 SING N N 77 VX9 CAV H42 SING N N 78 VX9 CAV H43 SING N N 79 VX9 CAX H44 SING N N 80 VX9 CAX H45 SING N N 81 VX9 CAX H46 SING N N 82 VX9 CAY H47 SING N N 83 VX9 CAY H48 SING N N 84 VX9 CAZ H49 SING N N 85 VX9 CAZ H50 SING N N 86 VX9 CBA H51 SING N N 87 VX9 CBE H52 SING N N 88 VX9 CBE H53 SING N N 89 VX9 CBF H54 SING N N 90 VX9 CBF H55 SING N N 91 VX9 OBI H56 SING N N 92 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor VX9 InChI InChI 1.06 "InChI=1S/C31H56O4/c1-7-23(4)28(24(5)11-8-10-22(2)3)13-9-12-25-14-15-26-20-27(18-19-31(26,6)21-25)35-30(34)17-16-29(32)33/h22-28H,7-21H2,1-6H3,(H,32,33)/t23-,24+,25-,26-,27-,28-,31+/m0/s1" VX9 InChIKey InChI 1.06 CAWMEKGHGQMGSF-ZGQNKYPXSA-N VX9 SMILES_CANONICAL CACTVS 3.385 "CC[C@H](C)[C@H](CCC[C@H]1CC[C@H]2C[C@H](CC[C@]2(C)C1)OC(=O)CCC(O)=O)[C@H](C)CCCC(C)C" VX9 SMILES CACTVS 3.385 "CC[CH](C)[CH](CCC[CH]1CC[CH]2C[CH](CC[C]2(C)C1)OC(=O)CCC(O)=O)[CH](C)CCCC(C)C" VX9 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC[C@H](C)[C@H](CCC[C@H]1CC[C@H]2C[C@H](CC[C@@]2(C1)C)OC(=O)CCC(=O)O)[C@H](C)CCCC(C)C" VX9 SMILES "OpenEye OEToolkits" 2.0.7 "CCC(C)C(CCCC1CCC2CC(CCC2(C1)C)OC(=O)CCC(=O)O)C(C)CCCC(C)C" # _pdbx_chem_comp_identifier.comp_id VX9 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "4-[[(2~{S},4~{a}~{R},6~{S},8~{a}~{S})-6-[(4~{S},5~{R})-4-[(2~{S})-butan-2-yl]-5,9-dimethyl-decyl]-4~{a}-methyl-2,3,4,5,6,7,8,8~{a}-octahydro-1~{H}-naphthalen-2-yl]oxy]-4-oxidanylidene-butanoic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site VX9 "Create component" 2023-09-02 PDBJ VX9 "Initial release" 2024-04-10 RCSB #