data_VXY # _chem_comp.id VXY _chem_comp.name "2,2-difluoroethyl (3S)-3-{[2'-amino-5-fluoro-2-(morpholin-4-yl)[4,5'-bipyrimidin]-6-yl]amino}-3-(hydroxymethyl)pyrrolidine-1-carboxylate" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C20 H25 F3 N8 O4" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2020-09-21 _chem_comp.pdbx_modified_date 2021-01-01 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 498.459 _chem_comp.one_letter_code ? _chem_comp.three_letter_code VXY _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7K6M _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal VXY C4 C1 C 0 1 Y N N -16.817 6.123 27.838 4.837 1.786 1.270 C4 VXY 1 VXY C6 C2 C 0 1 Y N N -15.534 7.984 27.059 4.092 2.806 -0.771 C6 VXY 2 VXY C5 C3 C 0 1 Y N N -16.532 7.495 27.927 3.951 1.799 0.188 C5 VXY 3 VXY C28 C4 C 0 1 Y N N -18.503 8.229 29.319 1.648 1.100 -0.478 C28 VXY 4 VXY C8 C5 C 0 1 Y N N -17.194 8.407 28.849 2.891 0.771 0.061 C8 VXY 5 VXY C12 C6 C 0 1 Y N N -19.091 9.267 30.109 0.683 0.098 -0.578 C12 VXY 6 VXY C10 C7 C 0 1 Y N N -17.086 10.440 29.989 2.171 -1.405 0.350 C10 VXY 7 VXY C2 C8 C 0 1 Y N N -15.249 5.878 26.155 5.863 3.664 0.424 C2 VXY 8 VXY C21 C9 C 0 1 N N N -21.737 12.562 33.835 -5.038 0.485 -0.793 C21 VXY 9 VXY C17 C10 C 0 1 N N N -22.571 9.857 31.479 -1.956 -1.332 0.041 C17 VXY 10 VXY C18 C11 C 0 1 N N N -23.006 10.956 32.454 -3.058 -0.349 0.508 C18 VXY 11 VXY C31 C12 C 0 1 N N N -16.814 12.458 31.394 2.223 -3.664 -0.308 C31 VXY 12 VXY C35 C13 C 0 1 N N N -14.881 11.539 30.141 3.806 -2.802 1.305 C35 VXY 13 VXY C20 C14 C 0 1 N N N -20.559 11.064 32.182 -2.864 -0.152 -1.868 C20 VXY 14 VXY C32 C15 C 0 1 N N N -16.132 13.833 31.287 2.471 -5.079 0.220 C32 VXY 15 VXY C34 C16 C 0 1 N N N -14.321 12.973 30.104 4.040 -4.228 1.818 C34 VXY 16 VXY C14 C17 C 0 1 N N S -21.175 10.308 30.975 -1.534 -0.705 -1.315 C14 VXY 17 VXY C15 C18 C 0 1 N N N -21.335 11.291 29.785 -0.961 -1.773 -2.249 C15 VXY 18 VXY C24 C19 C 0 1 N N N -20.339 14.040 35.058 -7.126 1.102 0.183 C24 VXY 19 VXY C25 C20 C 0 1 N N N -19.486 15.095 34.272 -7.793 1.181 1.558 C25 VXY 20 VXY N3 N1 N 0 1 Y N N -16.224 5.295 26.960 5.765 2.722 1.351 N3 VXY 21 VXY N7 N2 N 0 1 Y N N -14.875 7.222 26.174 5.049 3.704 -0.622 N7 VXY 22 VXY N9 N3 N 0 1 Y N N -16.461 9.498 29.201 3.112 -0.482 0.461 N9 VXY 23 VXY N11 N4 N 0 1 Y N N -18.387 10.384 30.460 0.979 -1.129 -0.157 N11 VXY 24 VXY N30 N5 N 0 1 N N N -16.360 11.618 30.257 2.439 -2.695 0.776 N30 VXY 25 VXY N19 N6 N 0 1 N N N -21.734 11.507 32.954 -3.769 0.036 -0.725 N19 VXY 26 VXY N1 N7 N 0 1 N N N -14.592 5.057 25.281 6.853 4.622 0.542 N1 VXY 27 VXY N13 N8 N 0 1 N N N -20.388 9.132 30.587 -0.568 0.377 -1.107 N13 VXY 28 VXY O22 O1 O 0 1 N N N -22.733 13.078 34.335 -5.523 0.773 -1.869 O22 VXY 29 VXY O33 O2 O 0 1 N N N -14.738 13.693 31.232 3.794 -5.156 0.758 O33 VXY 30 VXY O16 O3 O 0 1 N N N -21.898 10.545 28.742 -0.471 -1.151 -3.439 O16 VXY 31 VXY O23 O4 O 0 1 N N N -20.469 12.953 34.179 -5.767 0.613 0.331 O23 VXY 32 VXY F29 F1 F 0 1 N N N -19.216 7.152 29.015 1.383 2.359 -0.890 F29 VXY 33 VXY F26 F2 F 0 1 N N N -18.170 14.940 34.516 -7.816 -0.091 2.139 F26 VXY 34 VXY F27 F3 F 0 1 N N N -19.592 14.872 32.947 -7.070 2.055 2.377 F27 VXY 35 VXY H38 H1 H 0 1 N N N -17.553 5.710 28.512 4.760 1.023 2.031 H38 VXY 36 VXY H39 H2 H 0 1 N N N -15.286 9.034 27.110 3.427 2.850 -1.621 H39 VXY 37 VXY H44 H3 H 0 1 N N N -23.279 9.779 30.641 -1.121 -1.345 0.742 H44 VXY 38 VXY H45 H4 H 0 1 N N N -22.503 8.887 31.993 -2.361 -2.334 -0.101 H45 VXY 39 VXY H47 H5 H 0 1 N N N -23.591 11.730 31.936 -3.739 -0.843 1.200 H47 VXY 40 VXY H46 H6 H 0 1 N N N -23.602 10.536 33.278 -2.610 0.528 0.977 H46 VXY 41 VXY H53 H7 H 0 1 N N N -17.906 12.581 31.352 2.912 -3.454 -1.126 H53 VXY 42 VXY H54 H8 H 0 1 N N N -16.536 11.979 32.344 1.197 -3.585 -0.668 H54 VXY 43 VXY H60 H9 H 0 1 N N N -14.608 11.009 29.216 3.936 -2.094 2.124 H60 VXY 44 VXY H59 H10 H 0 1 N N N -14.468 11.001 31.007 4.521 -2.578 0.514 H59 VXY 45 VXY H49 H11 H 0 1 N N N -19.925 10.395 32.782 -2.690 0.803 -2.364 H49 VXY 46 VXY H48 H12 H 0 1 N N N -19.965 11.925 31.843 -3.299 -0.861 -2.573 H48 VXY 47 VXY H55 H13 H 0 1 N N N -16.400 14.438 32.166 1.747 -5.308 1.002 H55 VXY 48 VXY H56 H14 H 0 1 N N N -16.480 14.339 30.374 2.367 -5.796 -0.595 H56 VXY 49 VXY H58 H15 H 0 1 N N N -13.222 12.932 30.087 5.070 -4.328 2.159 H58 VXY 50 VXY H57 H16 H 0 1 N N N -14.683 13.480 29.197 3.361 -4.433 2.645 H57 VXY 51 VXY H42 H17 H 0 1 N N N -20.355 11.690 29.484 -0.144 -2.293 -1.749 H42 VXY 52 VXY H41 H18 H 0 1 N N N -22.000 12.122 30.063 -1.742 -2.487 -2.508 H41 VXY 53 VXY H50 H19 H 0 1 N N N -21.327 14.453 35.312 -7.690 0.421 -0.455 H50 VXY 54 VXY H51 H20 H 0 1 N N N -19.822 13.733 35.979 -7.108 2.094 -0.270 H51 VXY 55 VXY H52 H21 H 0 1 N N N -19.835 16.102 34.545 -8.813 1.548 1.446 H52 VXY 56 VXY H37 H22 H 0 1 N N N -13.914 5.586 24.771 6.944 5.311 -0.135 H37 VXY 57 VXY H36 H23 H 0 1 N N N -14.133 4.328 25.789 7.455 4.606 1.302 H36 VXY 58 VXY H40 H24 H 0 1 N N N -20.908 8.665 29.872 -0.804 1.288 -1.340 H40 VXY 59 VXY H43 H25 H 0 1 N N N -22.018 11.103 27.982 -0.092 -1.769 -4.079 H43 VXY 60 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal VXY N1 C2 SING N N 1 VXY C2 N7 DOUB Y N 2 VXY C2 N3 SING Y N 3 VXY N7 C6 SING Y N 4 VXY N3 C4 DOUB Y N 5 VXY C6 C5 DOUB Y N 6 VXY C4 C5 SING Y N 7 VXY C5 C8 SING N N 8 VXY O16 C15 SING N N 9 VXY C8 N9 DOUB Y N 10 VXY C8 C28 SING Y N 11 VXY F29 C28 SING N N 12 VXY N9 C10 SING Y N 13 VXY C28 C12 DOUB Y N 14 VXY C15 C14 SING N N 15 VXY C10 N30 SING N N 16 VXY C10 N11 DOUB Y N 17 VXY C34 C35 SING N N 18 VXY C34 O33 SING N N 19 VXY C12 N11 SING Y N 20 VXY C12 N13 SING N N 21 VXY C35 N30 SING N N 22 VXY N30 C31 SING N N 23 VXY N13 C14 SING N N 24 VXY C14 C17 SING N N 25 VXY C14 C20 SING N N 26 VXY O33 C32 SING N N 27 VXY C32 C31 SING N N 28 VXY C17 C18 SING N N 29 VXY C20 N19 SING N N 30 VXY C18 N19 SING N N 31 VXY F27 C25 SING N N 32 VXY N19 C21 SING N N 33 VXY C21 O23 SING N N 34 VXY C21 O22 DOUB N N 35 VXY O23 C24 SING N N 36 VXY C25 F26 SING N N 37 VXY C25 C24 SING N N 38 VXY C4 H38 SING N N 39 VXY C6 H39 SING N N 40 VXY C17 H44 SING N N 41 VXY C17 H45 SING N N 42 VXY C18 H47 SING N N 43 VXY C18 H46 SING N N 44 VXY C31 H53 SING N N 45 VXY C31 H54 SING N N 46 VXY C35 H60 SING N N 47 VXY C35 H59 SING N N 48 VXY C20 H49 SING N N 49 VXY C20 H48 SING N N 50 VXY C32 H55 SING N N 51 VXY C32 H56 SING N N 52 VXY C34 H58 SING N N 53 VXY C34 H57 SING N N 54 VXY C15 H42 SING N N 55 VXY C15 H41 SING N N 56 VXY C24 H50 SING N N 57 VXY C24 H51 SING N N 58 VXY C25 H52 SING N N 59 VXY N1 H37 SING N N 60 VXY N1 H36 SING N N 61 VXY N13 H40 SING N N 62 VXY O16 H43 SING N N 63 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor VXY SMILES ACDLabs 12.01 "c1c(cnc(n1)N)c3c(c(nc(N2CCOCC2)n3)NC4(CCN(C(OCC(F)F)=O)C4)CO)F" VXY InChI InChI 1.03 "InChI=1S/C20H25F3N8O4/c21-13(22)9-35-19(33)31-2-1-20(10-31,11-32)29-16-14(23)15(12-7-25-17(24)26-8-12)27-18(28-16)30-3-5-34-6-4-30/h7-8,13,32H,1-6,9-11H2,(H2,24,25,26)(H,27,28,29)/t20-/m0/s1" VXY InChIKey InChI 1.03 RTOREZYNLPQUKM-FQEVSTJZSA-N VXY SMILES_CANONICAL CACTVS 3.385 "Nc1ncc(cn1)c2nc(nc(N[C@@]3(CO)CCN(C3)C(=O)OCC(F)F)c2F)N4CCOCC4" VXY SMILES CACTVS 3.385 "Nc1ncc(cn1)c2nc(nc(N[C]3(CO)CCN(C3)C(=O)OCC(F)F)c2F)N4CCOCC4" VXY SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1c(cnc(n1)N)c2c(c(nc(n2)N3CCOCC3)N[C@]4(CCN(C4)C(=O)OCC(F)F)CO)F" VXY SMILES "OpenEye OEToolkits" 2.0.7 "c1c(cnc(n1)N)c2c(c(nc(n2)N3CCOCC3)NC4(CCN(C4)C(=O)OCC(F)F)CO)F" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier VXY "SYSTEMATIC NAME" ACDLabs 12.01 "2,2-difluoroethyl (3S)-3-{[2'-amino-5-fluoro-2-(morpholin-4-yl)[4,5'-bipyrimidin]-6-yl]amino}-3-(hydroxymethyl)pyrrolidine-1-carboxylate" VXY "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "2,2-bis(fluoranyl)ethyl (3~{S})-3-[[6-(2-azanylpyrimidin-5-yl)-5-fluoranyl-2-morpholin-4-yl-pyrimidin-4-yl]amino]-3-(hydroxymethyl)pyrrolidine-1-carboxylate" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site VXY "Create component" 2020-09-21 RCSB VXY "Initial release" 2021-01-06 RCSB ##