data_VY0 # _chem_comp.id VY0 _chem_comp.name "macrocyclic inhibitor" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C17 H19 N7 O" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-09-20 _chem_comp.pdbx_modified_date 2023-11-03 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 337.379 _chem_comp.one_letter_code ? _chem_comp.three_letter_code VY0 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8QLQ _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal VY0 C10 C1 C 0 1 Y N N N N N 1.537 -22.420 -22.190 5.254 1.441 -0.013 C10 VY0 1 VY0 C7 C2 C 0 1 Y N N N N N 3.758 -19.593 -23.333 1.639 0.664 -0.072 C7 VY0 2 VY0 C5 C3 C 0 1 N N N N N N 4.284 -15.611 -22.463 -0.790 -2.534 -0.416 C5 VY0 3 VY0 C6 C4 C 0 1 Y N N N N N 3.059 -17.736 -22.169 1.456 -1.644 -0.023 C6 VY0 4 VY0 C1 C5 C 0 1 N N N N N N 6.198 -15.306 -26.090 -3.121 -0.943 -0.060 C1 VY0 5 VY0 C2 C6 C 0 1 N N N N N N 6.372 -14.640 -24.724 -3.685 -2.228 0.553 C2 VY0 6 VY0 C3 C7 C 0 1 N N N N N N 5.117 -13.937 -24.212 -3.102 -3.443 -0.169 C3 VY0 7 VY0 C4 C8 C 0 1 N N N N N N 3.984 -14.871 -23.758 -1.638 -3.622 0.245 C4 VY0 8 VY0 C11 C9 C 0 1 Y N N N N N 0.780 -21.755 -21.241 5.791 0.162 0.100 C11 VY0 9 VY0 C12 C10 C 0 1 Y N N N N N 0.993 -20.427 -20.982 4.986 -0.938 0.146 C12 VY0 10 VY0 C13 C11 C 0 1 Y N N N N N 1.992 -19.713 -21.683 3.595 -0.782 0.065 C13 VY0 11 VY0 C14 C12 C 0 1 Y N N N N N 5.568 -19.590 -25.013 -0.287 2.120 -0.031 C14 VY0 12 VY0 C15 C13 C 0 1 Y N N N N N 5.796 -18.212 -25.188 -1.309 1.181 -0.105 C15 VY0 13 VY0 C16 C14 C 0 1 Y N N N N N 6.869 -18.144 -26.047 -2.510 1.847 0.007 C16 VY0 14 VY0 C8 C15 C 0 1 Y N N N N N 2.774 -20.392 -22.647 3.053 0.521 -0.027 C8 VY0 15 VY0 C9 C16 C 0 1 Y N N N N N 2.516 -21.766 -22.881 3.904 1.630 -0.073 C9 VY0 16 VY0 N1 N1 N 0 1 N N N N N N 3.151 -16.396 -21.997 0.630 -2.761 -0.093 N1 VY0 17 VY0 N2 N2 N 0 1 Y N N N N N 3.869 -18.281 -23.090 0.902 -0.433 -0.086 N2 VY0 18 VY0 N3 N3 N 0 1 Y N N N N N 2.139 -18.375 -21.428 2.756 -1.828 0.073 N3 VY0 19 VY0 N4 N4 N 0 1 N N N N N N 4.612 -20.183 -24.210 1.115 1.951 -0.108 N4 VY0 20 VY0 O O1 O 0 1 N N N N N N 8.811 -17.506 -27.235 -4.776 2.165 -0.017 O VY0 21 VY0 C C17 C 0 1 N N N N N N 7.776 -17.142 -26.681 -3.879 1.344 -0.054 C VY0 22 VY0 N5 N5 N 0 1 Y N N N N N 7.213 -19.422 -26.336 -2.208 3.179 0.176 N5 VY0 23 VY0 N6 N6 N 0 1 Y N N N N N 6.421 -20.337 -25.715 -0.822 3.316 0.146 N6 VY0 24 VY0 N N7 N 0 1 N N N N N N 7.449 -15.842 -26.616 -4.237 0.037 -0.150 N VY0 25 VY0 H14 H1 H 0 1 N N N N N N 1.351 -23.466 -22.386 5.914 2.295 -0.049 H14 VY0 26 VY0 H10 H2 H 0 1 N N N N N N 5.136 -16.286 -22.631 -0.928 -2.571 -1.497 H10 VY0 27 VY0 H11 H3 H 0 1 N N N N N N 4.546 -14.875 -21.688 -1.096 -1.556 -0.043 H11 VY0 28 VY0 H3 H4 H 0 1 N N N N N N 5.809 -14.560 -26.799 -2.329 -0.546 0.575 H3 VY0 29 VY0 H2 H5 H 0 1 N N N N N N 5.476 -16.130 -25.991 -2.728 -1.150 -1.056 H2 VY0 30 VY0 H5 H6 H 0 1 N N N N N N 6.657 -15.414 -23.996 -3.420 -2.272 1.610 H5 VY0 31 VY0 H4 H7 H 0 1 N N N N N N 7.178 -13.896 -24.802 -4.770 -2.232 0.452 H4 VY0 32 VY0 H7 H8 H 0 1 N N N N N N 5.404 -13.309 -23.356 -3.668 -4.334 0.102 H7 VY0 33 VY0 H6 H9 H 0 1 N N N N N N 4.730 -13.300 -25.021 -3.159 -3.288 -1.246 H6 VY0 34 VY0 H9 H10 H 0 1 N N N N N N 3.075 -14.269 -23.611 -1.286 -4.602 -0.075 H9 VY0 35 VY0 H8 H11 H 0 1 N N N N N N 3.808 -15.614 -24.550 -1.554 -3.540 1.329 H8 VY0 36 VY0 H15 H12 H 0 1 N N N N N N 0.013 -22.289 -20.699 6.863 0.038 0.151 H15 VY0 37 VY0 H16 H13 H 0 1 N N N N N N 0.394 -19.922 -20.238 5.417 -1.923 0.244 H16 VY0 38 VY0 H18 H14 H 0 1 N N N N N N 5.250 -17.391 -24.747 -1.184 0.116 -0.228 H18 VY0 39 VY0 H13 H15 H 0 1 N N N N N N 3.101 -22.302 -23.614 3.496 2.626 -0.163 H13 VY0 40 VY0 H12 H16 H 0 1 N N N N N N 3.096 -16.241 -21.011 0.975 -3.654 0.064 H12 VY0 41 VY0 H17 H17 H 0 1 N N N N N N 4.539 -21.178 -24.284 1.701 2.720 -0.184 H17 VY0 42 VY0 H H18 H 0 1 N N N N N N 7.970 -19.667 -26.942 -2.849 3.898 0.295 H VY0 43 VY0 H1 H19 H 0 1 N N N N N N 8.120 -15.184 -26.957 -5.159 -0.239 -0.270 H1 VY0 44 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal VY0 C O DOUB N N 1 VY0 C N SING N N 2 VY0 N C1 SING N N 3 VY0 C1 C2 SING N N 4 VY0 C2 C3 SING N N 5 VY0 C3 C4 SING N N 6 VY0 C4 C5 SING N N 7 VY0 C5 N1 SING N N 8 VY0 N1 C6 SING N N 9 VY0 C6 N2 DOUB Y N 10 VY0 N2 C7 SING Y N 11 VY0 C8 C7 DOUB Y N 12 VY0 C8 C9 SING Y N 13 VY0 C9 C10 DOUB Y N 14 VY0 C10 C11 SING Y N 15 VY0 C11 C12 DOUB Y N 16 VY0 C12 C13 SING Y N 17 VY0 C13 C8 SING Y N 18 VY0 N3 C13 DOUB Y N 19 VY0 C6 N3 SING Y N 20 VY0 C7 N4 SING N N 21 VY0 N4 C14 SING N N 22 VY0 C14 C15 SING Y N 23 VY0 C15 C16 DOUB Y N 24 VY0 C16 C SING N N 25 VY0 N5 C16 SING Y N 26 VY0 N6 N5 SING Y N 27 VY0 C14 N6 DOUB Y N 28 VY0 C10 H14 SING N N 29 VY0 C5 H10 SING N N 30 VY0 C5 H11 SING N N 31 VY0 C1 H3 SING N N 32 VY0 C1 H2 SING N N 33 VY0 C2 H5 SING N N 34 VY0 C2 H4 SING N N 35 VY0 C3 H7 SING N N 36 VY0 C3 H6 SING N N 37 VY0 C4 H9 SING N N 38 VY0 C4 H8 SING N N 39 VY0 C11 H15 SING N N 40 VY0 C12 H16 SING N N 41 VY0 C15 H18 SING N N 42 VY0 C9 H13 SING N N 43 VY0 N1 H12 SING N N 44 VY0 N4 H17 SING N N 45 VY0 N5 H SING N N 46 VY0 N H1 SING N N 47 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor VY0 InChI InChI 1.06 "InChI=1S/C17H19N7O/c25-16-13-10-14(24-23-13)21-15-11-6-2-3-7-12(11)20-17(22-15)19-9-5-1-4-8-18-16/h2-3,6-7,10H,1,4-5,8-9H2,(H,18,25)(H3,19,20,21,22,23,24)" VY0 InChIKey InChI 1.06 XBWKVZHZUZNMJE-UHFFFAOYSA-N VY0 SMILES_CANONICAL CACTVS 3.385 "O=C1NCCCCCNc2nc(Nc3cc1[nH]n3)c4ccccc4n2" VY0 SMILES CACTVS 3.385 "O=C1NCCCCCNc2nc(Nc3cc1[nH]n3)c4ccccc4n2" VY0 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1ccc2c(c1)c3nc(n2)NCCCCCNC(=O)c4cc(n[nH]4)N3" VY0 SMILES "OpenEye OEToolkits" 2.0.7 "c1ccc2c(c1)c3nc(n2)NCCCCCNC(=O)c4cc(n[nH]4)N3" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site VY0 "Create component" 2023-09-20 PDBE VY0 "Initial release" 2023-11-08 RCSB #