data_VY1 # _chem_comp.id VY1 _chem_comp.name "(3S)-3-[4-(2-aminopyrimidin-5-yl)-2-(morpholin-4-yl)-5,6-dihydro-7H-pyrrolo[2,3-d]pyrimidin-7-yl]-N-methylpyrrolidine-1-sulfonamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C19 H27 N9 O3 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2020-09-21 _chem_comp.pdbx_modified_date 2021-01-01 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 461.541 _chem_comp.one_letter_code ? _chem_comp.three_letter_code VY1 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7K6O _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal VY1 C22 C1 C 0 1 Y N N -15.078 7.543 24.442 -3.813 2.164 -0.777 C22 VY1 1 VY1 C27 C2 C 0 1 Y N N -16.224 5.791 25.607 -4.934 0.200 0.026 C27 VY1 2 VY1 C21 C3 C 0 1 Y N N -16.017 7.164 25.415 -3.741 0.891 -0.204 C21 VY1 3 VY1 C15 C4 C 0 1 Y N N -18.069 8.049 26.490 -1.441 1.058 0.744 C15 VY1 4 VY1 C20 C5 C 0 1 Y N N -16.720 8.155 26.213 -2.434 0.290 0.151 C20 VY1 5 VY1 C16 C6 C 0 1 Y N N -18.654 9.064 27.288 -0.220 0.467 1.062 C16 VY1 6 VY1 C18 C7 C 0 1 Y N N -16.647 10.163 27.398 -1.022 -1.535 0.225 C18 VY1 7 VY1 C24 C8 C 0 1 Y N N -14.712 5.321 23.928 -6.107 1.983 -0.837 C24 VY1 8 VY1 C14 C9 C 0 1 N N N -19.096 7.067 26.073 -1.381 2.509 1.166 C14 VY1 9 VY1 C8 C10 C 0 1 N N N -22.391 9.423 27.879 2.658 2.821 1.319 C8 VY1 10 VY1 C13 C11 C 0 1 N N N -20.413 7.702 26.587 -0.155 2.537 2.109 C13 VY1 11 VY1 C7 C12 C 0 1 N N N -23.021 10.451 28.823 3.942 2.625 0.486 C7 VY1 12 VY1 C29 C13 C 0 1 N N N -16.444 12.250 28.748 -0.427 -3.600 1.181 C29 VY1 13 VY1 C33 C14 C 0 1 N N N -14.443 11.289 27.681 -1.987 -3.487 -0.665 C33 VY1 14 VY1 C11 C15 C 0 1 N N N -20.629 10.623 29.089 2.607 0.649 0.293 C11 VY1 15 VY1 C30 C16 C 0 1 N N N -15.878 13.643 28.409 -0.139 -5.063 0.834 C30 VY1 16 VY1 C32 C17 C 0 1 N N N -13.980 12.731 27.401 -1.683 -4.953 -0.994 C32 VY1 17 VY1 C9 C18 C 0 1 N N S -20.930 9.899 27.749 1.666 1.821 0.669 C9 VY1 18 VY1 C1 C19 C 0 1 N N N -20.754 14.341 29.704 5.638 -1.362 0.562 C1 VY1 19 VY1 N23 N1 N 0 1 Y N N -14.416 6.661 23.677 -4.997 2.668 -1.075 N23 VY1 20 VY1 N26 N2 N 0 1 Y N N -15.600 4.842 24.889 -6.079 0.769 -0.304 N26 VY1 21 VY1 N19 N3 N 0 1 Y N N -15.972 9.204 26.664 -2.190 -1.000 -0.094 N19 VY1 22 VY1 N17 N4 N 0 1 Y N N -17.999 10.149 27.760 -0.054 -0.829 0.789 N17 VY1 23 VY1 N12 N5 N 0 1 N N N -20.010 8.756 27.574 0.646 1.388 1.634 N12 VY1 24 VY1 N28 N6 N 0 1 N N N -15.919 11.298 27.750 -0.805 -2.876 -0.041 N28 VY1 25 VY1 N6 N7 N 0 1 N N N -21.937 10.833 29.760 3.861 1.295 -0.134 N6 VY1 26 VY1 N25 N8 N 0 1 N N N -14.071 4.387 23.162 -7.326 2.543 -1.168 N25 VY1 27 VY1 N2 N9 N 0 1 N N N -21.925 13.463 29.667 6.074 -0.191 -0.201 N2 VY1 28 VY1 O4 O1 O 0 1 N N N -21.163 12.254 31.698 4.312 -0.346 -1.922 O4 VY1 29 VY1 O5 O2 O 0 1 N N N -23.551 12.226 31.050 5.705 1.720 -1.719 O5 VY1 30 VY1 O31 O3 O 0 1 N N N -14.478 13.617 28.366 -1.287 -5.633 0.200 O31 VY1 31 VY1 S3 S1 S 0 1 N N N -22.172 12.206 30.700 4.992 0.632 -1.147 S3 VY1 32 VY1 H48 H1 H 0 1 N N N -14.879 8.595 24.303 -2.913 2.730 -0.970 H48 VY1 33 VY1 H51 H2 H 0 1 N N N -16.921 5.480 26.371 -4.919 -0.786 0.467 H51 VY1 34 VY1 H47 H3 H 0 1 N N N -19.113 6.953 24.979 -1.220 3.156 0.304 H47 VY1 35 VY1 H46 H4 H 0 1 N N N -18.920 6.087 26.542 -2.287 2.794 1.701 H46 VY1 36 VY1 H40 H5 H 0 1 N N N -22.894 9.428 26.901 2.833 2.565 2.364 H40 VY1 37 VY1 H41 H6 H 0 1 N N N -22.438 8.412 28.311 2.292 3.844 1.230 H41 VY1 38 VY1 H45 H7 H 0 1 N N N -20.970 8.153 25.753 0.399 3.469 1.995 H45 VY1 39 VY1 H44 H8 H 0 1 N N N -21.038 6.941 27.076 -0.461 2.393 3.146 H44 VY1 40 VY1 H39 H9 H 0 1 N N N -23.371 11.329 28.260 4.002 3.392 -0.287 H39 VY1 41 VY1 H38 H10 H 0 1 N N N -23.865 10.006 29.370 4.816 2.680 1.134 H38 VY1 42 VY1 H52 H11 H 0 1 N N N -17.543 12.271 28.704 -1.245 -3.552 1.901 H52 VY1 43 VY1 H53 H12 H 0 1 N N N -16.123 11.950 29.757 0.465 -3.146 1.613 H53 VY1 44 VY1 H59 H13 H 0 1 N N N -14.110 10.624 26.871 -2.234 -2.951 -1.581 H59 VY1 45 VY1 H58 H14 H 0 1 N N N -14.025 10.940 28.637 -2.830 -3.436 0.025 H58 VY1 46 VY1 H43 H15 H 0 1 N N N -19.975 10.001 29.718 2.784 0.012 1.160 H43 VY1 47 VY1 H42 H16 H 0 1 N N N -20.141 11.590 28.897 2.182 0.066 -0.524 H42 VY1 48 VY1 H54 H17 H 0 1 N N N -16.201 14.360 29.178 0.714 -5.114 0.156 H54 VY1 49 VY1 H55 H18 H 0 1 N N N -16.263 13.959 27.428 0.087 -5.616 1.745 H55 VY1 50 VY1 H57 H19 H 0 1 N N N -12.881 12.765 27.416 -2.575 -5.426 -1.404 H57 VY1 51 VY1 H56 H20 H 0 1 N N N -14.343 13.039 26.409 -0.875 -5.002 -1.724 H56 VY1 52 VY1 H10 H21 H 0 1 N N N -20.839 10.608 26.913 1.203 2.250 -0.220 H10 VY1 53 VY1 H36 H22 H 0 1 N N N -20.836 15.096 28.908 4.850 -1.071 1.257 H36 VY1 54 VY1 H34 H23 H 0 1 N N N -20.703 14.843 30.682 5.257 -2.120 -0.122 H34 VY1 55 VY1 H35 H24 H 0 1 N N N -19.843 13.744 29.550 6.482 -1.768 1.120 H35 VY1 56 VY1 H49 H25 H 0 1 N N N -13.464 4.847 22.514 -8.146 2.050 -1.010 H49 VY1 57 VY1 H50 H26 H 0 1 N N N -13.534 3.784 23.752 -7.361 3.431 -1.559 H50 VY1 58 VY1 H37 H27 H 0 1 N N N -22.717 14.064 29.778 6.997 0.104 -0.152 H37 VY1 59 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal VY1 N25 C24 SING N N 1 VY1 N23 C24 DOUB Y N 2 VY1 N23 C22 SING Y N 3 VY1 C24 N26 SING Y N 4 VY1 C22 C21 DOUB Y N 5 VY1 N26 C27 DOUB Y N 6 VY1 C21 C27 SING Y N 7 VY1 C21 C20 SING N N 8 VY1 C14 C15 SING N N 9 VY1 C14 C13 SING N N 10 VY1 C20 C15 DOUB Y N 11 VY1 C20 N19 SING Y N 12 VY1 C15 C16 SING Y N 13 VY1 C13 N12 SING N N 14 VY1 N19 C18 DOUB Y N 15 VY1 C16 N12 SING N N 16 VY1 C16 N17 DOUB Y N 17 VY1 C18 N28 SING N N 18 VY1 C18 N17 SING Y N 19 VY1 C32 C33 SING N N 20 VY1 C32 O31 SING N N 21 VY1 N12 C9 SING N N 22 VY1 C33 N28 SING N N 23 VY1 C9 C8 SING N N 24 VY1 C9 C11 SING N N 25 VY1 N28 C29 SING N N 26 VY1 C8 C7 SING N N 27 VY1 O31 C30 SING N N 28 VY1 C30 C29 SING N N 29 VY1 C7 N6 SING N N 30 VY1 C11 N6 SING N N 31 VY1 N2 C1 SING N N 32 VY1 N2 S3 SING N N 33 VY1 N6 S3 SING N N 34 VY1 S3 O5 DOUB N N 35 VY1 S3 O4 DOUB N N 36 VY1 C22 H48 SING N N 37 VY1 C27 H51 SING N N 38 VY1 C14 H47 SING N N 39 VY1 C14 H46 SING N N 40 VY1 C8 H40 SING N N 41 VY1 C8 H41 SING N N 42 VY1 C13 H45 SING N N 43 VY1 C13 H44 SING N N 44 VY1 C7 H39 SING N N 45 VY1 C7 H38 SING N N 46 VY1 C29 H52 SING N N 47 VY1 C29 H53 SING N N 48 VY1 C33 H59 SING N N 49 VY1 C33 H58 SING N N 50 VY1 C11 H43 SING N N 51 VY1 C11 H42 SING N N 52 VY1 C30 H54 SING N N 53 VY1 C30 H55 SING N N 54 VY1 C32 H57 SING N N 55 VY1 C32 H56 SING N N 56 VY1 C9 H10 SING N N 57 VY1 C1 H36 SING N N 58 VY1 C1 H34 SING N N 59 VY1 C1 H35 SING N N 60 VY1 N25 H49 SING N N 61 VY1 N25 H50 SING N N 62 VY1 N2 H37 SING N N 63 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor VY1 SMILES ACDLabs 12.01 "c1c(cnc(n1)N)c5c2c(N(CC2)C3CCN(C3)S(NC)(=O)=O)nc(N4CCOCC4)n5" VY1 InChI InChI 1.03 "InChI=1S/C19H27N9O3S/c1-21-32(29,30)27-4-2-14(12-27)28-5-3-15-16(13-10-22-18(20)23-11-13)24-19(25-17(15)28)26-6-8-31-9-7-26/h10-11,14,21H,2-9,12H2,1H3,(H2,20,22,23)/t14-/m0/s1" VY1 InChIKey InChI 1.03 GDUURIYHJNAYDO-AWEZNQCLSA-N VY1 SMILES_CANONICAL CACTVS 3.385 "CN[S](=O)(=O)N1CC[C@@H](C1)N2CCc3c2nc(nc3c4cnc(N)nc4)N5CCOCC5" VY1 SMILES CACTVS 3.385 "CN[S](=O)(=O)N1CC[CH](C1)N2CCc3c2nc(nc3c4cnc(N)nc4)N5CCOCC5" VY1 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CNS(=O)(=O)N1CC[C@@H](C1)N2CCc3c2nc(nc3c4cnc(nc4)N)N5CCOCC5" VY1 SMILES "OpenEye OEToolkits" 2.0.7 "CNS(=O)(=O)N1CCC(C1)N2CCc3c2nc(nc3c4cnc(nc4)N)N5CCOCC5" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier VY1 "SYSTEMATIC NAME" ACDLabs 12.01 "(3S)-3-[4-(2-aminopyrimidin-5-yl)-2-(morpholin-4-yl)-5,6-dihydro-7H-pyrrolo[2,3-d]pyrimidin-7-yl]-N-methylpyrrolidine-1-sulfonamide" VY1 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(3~{S})-3-[4-(2-azanylpyrimidin-5-yl)-2-morpholin-4-yl-5,6-dihydropyrrolo[2,3-d]pyrimidin-7-yl]-~{N}-methyl-pyrrolidine-1-sulfonamide" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site VY1 "Create component" 2020-09-21 RCSB VY1 "Initial release" 2021-01-06 RCSB ##