data_VY4 # _chem_comp.id VY4 _chem_comp.name "tert-butyl (3S)-3-[4-(2-aminopyrimidin-5-yl)-2-(morpholin-4-yl)-5,6-dihydro-7H-pyrrolo[2,3-d]pyrimidin-7-yl]-3-methylpyrrolidine-1-carboxylate" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C24 H34 N8 O3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2020-09-21 _chem_comp.pdbx_modified_date 2021-01-01 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 482.579 _chem_comp.one_letter_code ? _chem_comp.three_letter_code VY4 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7K6N _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal VY4 C24 C1 C 0 1 Y N N -16.239 5.858 26.482 -4.677 1.723 0.230 C24 VY4 1 VY4 C29 C2 C 0 1 Y N N -14.679 7.489 25.693 -4.345 0.391 -1.740 C29 VY4 2 VY4 C23 C3 C 0 1 Y N N -15.808 7.190 26.476 -3.905 0.795 -0.476 C23 VY4 3 VY4 C17 C4 C 0 1 Y N N -17.825 8.177 27.545 -1.836 1.051 0.892 C17 VY4 4 VY4 C22 C5 C 0 1 Y N N -16.476 8.229 27.239 -2.651 0.254 0.101 C22 VY4 5 VY4 C18 C6 C 0 1 Y N N -18.366 9.248 28.301 -0.667 0.513 1.426 C18 VY4 6 VY4 C20 C7 C 0 1 Y N N -16.320 10.289 28.328 -1.167 -1.491 0.386 C20 VY4 7 VY4 C26 C8 C 0 1 Y N N -14.561 5.288 24.999 -6.174 1.771 -1.518 C26 VY4 8 VY4 C6 C9 C 0 1 N N N -21.430 12.820 31.164 4.009 0.913 -0.618 C6 VY4 9 VY4 C16 C10 C 0 1 N N N -18.886 7.195 27.216 -1.933 2.494 1.338 C16 VY4 10 VY4 C10 C11 C 0 1 N N N -22.005 9.691 29.279 1.987 -0.048 2.374 C10 VY4 11 VY4 C15 C12 C 0 1 N N N -20.157 7.808 27.855 -0.496 2.793 1.828 C15 VY4 12 VY4 C9 C13 C 0 1 N N N -22.553 10.894 30.063 3.250 -0.195 1.499 C9 VY4 13 VY4 C31 C14 C 0 1 N N N -16.008 12.315 29.731 -0.631 -3.560 1.369 C31 VY4 14 VY4 C35 C15 C 0 1 N N N -14.100 11.388 28.476 -1.821 -3.454 -0.735 C35 VY4 15 VY4 C13 C16 C 0 1 N N N -20.146 11.208 29.724 1.807 1.418 0.478 C13 VY4 16 VY4 C32 C17 C 0 1 N N N -15.406 13.713 29.495 -0.188 -4.987 1.034 C32 VY4 17 VY4 C34 C18 C 0 1 N N N -13.585 12.834 28.321 -1.367 -4.884 -1.048 C34 VY4 18 VY4 C11 C19 C 0 1 N N S -20.641 10.149 28.704 1.458 1.358 1.986 C11 VY4 19 VY4 C12 C20 C 0 1 N N N -20.818 10.804 27.331 2.193 2.453 2.763 C12 VY4 20 VY4 C1 C21 C 0 1 N N N -20.828 15.678 31.242 6.497 1.944 -1.694 C1 VY4 21 VY4 C3 C22 C 0 1 N N N -20.402 14.520 33.455 5.417 0.131 -3.031 C3 VY4 22 VY4 C4 C23 C 0 1 N N N -18.525 14.869 31.817 7.334 -0.404 -1.521 C4 VY4 23 VY4 C2 C24 C 0 1 N N N -20.032 14.606 31.978 6.090 0.469 -1.699 C2 VY4 24 VY4 N25 N1 N 0 1 Y N N -15.655 4.882 25.761 -5.790 2.178 -0.317 N25 VY4 25 VY4 N28 N2 N 0 1 Y N N -14.036 6.580 24.944 -5.467 0.897 -2.220 N28 VY4 26 VY4 N21 N3 N 0 1 Y N N -15.690 9.280 27.632 -2.287 -1.010 -0.131 N21 VY4 27 VY4 N19 N4 N 0 1 Y N N -17.662 10.327 28.708 -0.370 -0.757 1.146 N19 VY4 28 VY4 N14 N5 N 0 1 N N N -19.716 8.991 28.666 0.007 1.451 2.195 N14 VY4 29 VY4 N30 N6 N 0 1 N N N -15.572 11.438 28.621 -0.818 -2.804 0.122 N30 VY4 30 VY4 N8 N7 N 0 1 N N N -21.401 11.797 30.228 3.105 0.727 0.364 N8 VY4 31 VY4 N27 N8 N 0 1 N N N -13.941 4.337 24.237 -7.346 2.272 -2.054 N27 VY4 32 VY4 O7 O1 O 0 1 N N N -22.440 13.230 31.726 3.783 1.705 -1.511 O7 VY4 33 VY4 O33 O2 O 0 1 N N N -14.009 13.643 29.386 -1.159 -5.592 0.176 O33 VY4 34 VY4 O5 O3 O 0 1 N N N -20.187 13.341 31.354 5.163 0.219 -0.610 O5 VY4 35 VY4 H58 H1 H 0 1 N N N -17.087 5.599 27.099 -4.370 2.059 1.209 H58 VY4 36 VY4 H61 H2 H 0 1 N N N -14.310 8.504 25.694 -3.776 -0.324 -2.316 H61 VY4 37 VY4 H57 H3 H 0 1 N N N -19.003 7.093 26.127 -2.198 3.140 0.501 H57 VY4 38 VY4 H56 H4 H 0 1 N N N -18.661 6.211 27.654 -2.649 2.600 2.152 H56 VY4 39 VY4 H47 H5 H 0 1 N N N -22.692 9.419 28.464 1.255 -0.817 2.126 H47 VY4 40 VY4 H48 H6 H 0 1 N N N -21.869 8.828 29.947 2.243 -0.089 3.432 H48 VY4 41 VY4 H55 H7 H 0 1 N N N -20.857 8.129 27.070 0.103 3.226 1.027 H55 VY4 42 VY4 H54 H8 H 0 1 N N N -20.648 7.068 28.504 -0.514 3.451 2.697 H54 VY4 43 VY4 H46 H9 H 0 1 N N N -23.356 11.390 29.498 4.135 0.067 2.079 H46 VY4 44 VY4 H45 H10 H 0 1 N N N -22.937 10.574 31.043 3.332 -1.220 1.136 H45 VY4 45 VY4 H62 H11 H 0 1 N N N -17.106 12.379 29.747 -1.570 -3.590 1.921 H62 VY4 46 VY4 H63 H12 H 0 1 N N N -15.650 11.911 30.689 0.133 -3.075 1.977 H63 VY4 47 VY4 H69 H13 H 0 1 N N N -13.833 10.799 27.586 -1.926 -2.892 -1.663 H69 VY4 48 VY4 H68 H14 H 0 1 N N N -13.653 10.926 29.369 -2.780 -3.482 -0.216 H68 VY4 49 VY4 H53 H15 H 0 1 N N N -19.576 10.736 30.538 1.049 0.898 -0.108 H53 VY4 50 VY4 H52 H16 H 0 1 N N N -19.522 11.969 29.232 1.898 2.452 0.148 H52 VY4 51 VY4 H64 H17 H 0 1 N N N -15.669 14.366 30.340 0.777 -4.959 0.529 H64 VY4 52 VY4 H65 H18 H 0 1 N N N -15.820 14.131 28.565 -0.102 -5.566 1.953 H65 VY4 53 VY4 H67 H19 H 0 1 N N N -12.485 12.822 28.296 -2.134 -5.388 -1.636 H67 VY4 54 VY4 H66 H20 H 0 1 N N N -13.969 13.252 27.379 -0.435 -4.854 -1.614 H66 VY4 55 VY4 H51 H21 H 0 1 N N N -21.511 11.654 27.416 3.260 2.398 2.547 H51 VY4 56 VY4 H49 H22 H 0 1 N N N -19.843 11.161 26.967 1.811 3.429 2.463 H49 VY4 57 VY4 H50 H23 H 0 1 N N N -21.226 10.067 26.623 2.030 2.312 3.831 H50 VY4 58 VY4 H36 H24 H 0 1 N N N -20.691 16.647 31.745 7.193 2.132 -2.511 H36 VY4 59 VY4 H38 H25 H 0 1 N N N -20.472 15.750 30.204 5.611 2.566 -1.821 H38 VY4 60 VY4 H37 H26 H 0 1 N N N -21.895 15.410 31.246 6.977 2.185 -0.745 H37 VY4 61 VY4 H40 H27 H 0 1 N N N -19.802 13.735 33.939 6.113 0.319 -3.848 H40 VY4 62 VY4 H41 H28 H 0 1 N N N -20.201 15.486 33.940 5.127 -0.920 -3.034 H41 VY4 63 VY4 H39 H29 H 0 1 N N N -21.470 14.277 33.552 4.530 0.753 -3.158 H39 VY4 64 VY4 H43 H30 H 0 1 N N N -17.958 14.092 32.350 7.814 -0.163 -0.572 H43 VY4 65 VY4 H42 H31 H 0 1 N N N -18.261 14.848 30.749 7.044 -1.454 -1.525 H42 VY4 66 VY4 H44 H32 H 0 1 N N N -18.278 15.856 32.236 8.030 -0.216 -2.339 H44 VY4 67 VY4 H60 H33 H 0 1 N N N -13.176 4.751 23.744 -7.874 2.912 -1.552 H60 VY4 68 VY4 H59 H34 H 0 1 N N N -13.600 3.607 24.829 -7.640 1.983 -2.932 H59 VY4 69 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal VY4 N27 C26 SING N N 1 VY4 N28 C26 DOUB Y N 2 VY4 N28 C29 SING Y N 3 VY4 C26 N25 SING Y N 4 VY4 C29 C23 DOUB Y N 5 VY4 N25 C24 DOUB Y N 6 VY4 C23 C24 SING Y N 7 VY4 C23 C22 SING N N 8 VY4 C16 C17 SING N N 9 VY4 C16 C15 SING N N 10 VY4 C22 C17 DOUB Y N 11 VY4 C22 N21 SING Y N 12 VY4 C12 C11 SING N N 13 VY4 C17 C18 SING Y N 14 VY4 N21 C20 DOUB Y N 15 VY4 C15 N14 SING N N 16 VY4 C18 N14 SING N N 17 VY4 C18 N19 DOUB Y N 18 VY4 C34 C35 SING N N 19 VY4 C34 O33 SING N N 20 VY4 C20 N30 SING N N 21 VY4 C20 N19 SING Y N 22 VY4 C35 N30 SING N N 23 VY4 N30 C31 SING N N 24 VY4 N14 C11 SING N N 25 VY4 C11 C10 SING N N 26 VY4 C11 C13 SING N N 27 VY4 C10 C9 SING N N 28 VY4 O33 C32 SING N N 29 VY4 C32 C31 SING N N 30 VY4 C13 N8 SING N N 31 VY4 C9 N8 SING N N 32 VY4 N8 C6 SING N N 33 VY4 C6 O5 SING N N 34 VY4 C6 O7 DOUB N N 35 VY4 C1 C2 SING N N 36 VY4 O5 C2 SING N N 37 VY4 C4 C2 SING N N 38 VY4 C2 C3 SING N N 39 VY4 C24 H58 SING N N 40 VY4 C29 H61 SING N N 41 VY4 C16 H57 SING N N 42 VY4 C16 H56 SING N N 43 VY4 C10 H47 SING N N 44 VY4 C10 H48 SING N N 45 VY4 C15 H55 SING N N 46 VY4 C15 H54 SING N N 47 VY4 C9 H46 SING N N 48 VY4 C9 H45 SING N N 49 VY4 C31 H62 SING N N 50 VY4 C31 H63 SING N N 51 VY4 C35 H69 SING N N 52 VY4 C35 H68 SING N N 53 VY4 C13 H53 SING N N 54 VY4 C13 H52 SING N N 55 VY4 C32 H64 SING N N 56 VY4 C32 H65 SING N N 57 VY4 C34 H67 SING N N 58 VY4 C34 H66 SING N N 59 VY4 C12 H51 SING N N 60 VY4 C12 H49 SING N N 61 VY4 C12 H50 SING N N 62 VY4 C1 H36 SING N N 63 VY4 C1 H38 SING N N 64 VY4 C1 H37 SING N N 65 VY4 C3 H40 SING N N 66 VY4 C3 H41 SING N N 67 VY4 C3 H39 SING N N 68 VY4 C4 H43 SING N N 69 VY4 C4 H42 SING N N 70 VY4 C4 H44 SING N N 71 VY4 N27 H60 SING N N 72 VY4 N27 H59 SING N N 73 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor VY4 SMILES ACDLabs 12.01 "c1c(cnc(n1)N)c5c2c(N(CC2)C3(CCN(C(OC(C)(C)C)=O)C3)C)nc(N4CCOCC4)n5" VY4 InChI InChI 1.03 "InChI=1S/C24H34N8O3/c1-23(2,3)35-22(33)31-8-6-24(4,15-31)32-7-5-17-18(16-13-26-20(25)27-14-16)28-21(29-19(17)32)30-9-11-34-12-10-30/h13-14H,5-12,15H2,1-4H3,(H2,25,26,27)/t24-/m0/s1" VY4 InChIKey InChI 1.03 MEWKDLGRKBRJAF-DEOSSOPVSA-N VY4 SMILES_CANONICAL CACTVS 3.385 "CC(C)(C)OC(=O)N1CC[C@@](C)(C1)N2CCc3c2nc(nc3c4cnc(N)nc4)N5CCOCC5" VY4 SMILES CACTVS 3.385 "CC(C)(C)OC(=O)N1CC[C](C)(C1)N2CCc3c2nc(nc3c4cnc(N)nc4)N5CCOCC5" VY4 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C[C@@]1(CCN(C1)C(=O)OC(C)(C)C)N2CCc3c2nc(nc3c4cnc(nc4)N)N5CCOCC5" VY4 SMILES "OpenEye OEToolkits" 2.0.7 "CC1(CCN(C1)C(=O)OC(C)(C)C)N2CCc3c2nc(nc3c4cnc(nc4)N)N5CCOCC5" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier VY4 "SYSTEMATIC NAME" ACDLabs 12.01 "tert-butyl (3S)-3-[4-(2-aminopyrimidin-5-yl)-2-(morpholin-4-yl)-5,6-dihydro-7H-pyrrolo[2,3-d]pyrimidin-7-yl]-3-methylpyrrolidine-1-carboxylate" VY4 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "~{tert}-butyl (3~{S})-3-[4-(2-azanylpyrimidin-5-yl)-2-morpholin-4-yl-5,6-dihydropyrrolo[2,3-d]pyrimidin-7-yl]-3-methyl-pyrrolidine-1-carboxylate" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site VY4 "Create component" 2020-09-21 RCSB VY4 "Initial release" 2021-01-06 RCSB ##