data_VY7 # _chem_comp.id VY7 _chem_comp.name "1-{2-[2-(2,4-diamino-5,7-dihydro-6H-pyrrolo[3,4-d]pyrimidin-6-yl)-2-oxoethoxy]phenyl}piperidine-4-carboxylic acid" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C20 H24 N6 O4" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2020-09-21 _chem_comp.pdbx_modified_date 2021-03-12 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 412.442 _chem_comp.one_letter_code ? _chem_comp.three_letter_code VY7 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7K69 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal VY7 C11 C1 C 0 1 N N N -2.035 -2.809 18.428 0.596 1.098 0.003 C11 VY7 1 VY7 C13 C2 C 0 1 Y N N -3.511 -3.890 19.910 -1.598 2.015 -0.004 C13 VY7 2 VY7 C14 C3 C 0 1 Y N N -2.666 -3.664 20.969 -1.013 3.271 -0.008 C14 VY7 3 VY7 C15 C4 C 0 1 Y N N -2.787 -4.420 22.120 -1.806 4.404 -0.016 C15 VY7 4 VY7 C16 C5 C 0 1 Y N N -3.763 -5.397 22.179 -3.184 4.287 -0.020 C16 VY7 5 VY7 C17 C6 C 0 1 Y N N -4.611 -5.614 21.107 -3.776 3.038 -0.017 C17 VY7 6 VY7 C02 C7 C 0 1 Y N N -1.188 0.830 13.277 7.267 0.163 0.024 C02 VY7 7 VY7 C04 C8 C 0 1 Y N N -1.590 -0.715 14.851 4.965 0.284 0.016 C04 VY7 8 VY7 C05 C9 C 0 1 Y N N -1.136 -1.725 14.060 4.901 -1.092 0.016 C05 VY7 9 VY7 C06 C10 C 0 1 N N N -1.230 -3.054 14.755 3.457 -1.517 0.012 C06 VY7 10 VY7 C08 C11 C 0 1 N N N -2.052 -1.226 16.183 3.563 0.836 0.012 C08 VY7 11 VY7 C09 C12 C 0 1 N N N -1.608 -3.483 17.144 1.290 -0.240 0.005 C09 VY7 12 VY7 C18 C13 C 0 1 Y N N -4.500 -4.863 19.939 -2.986 1.897 -0.009 C18 VY7 13 VY7 C20 C14 C 0 1 N N N -6.786 -5.010 19.033 -4.342 0.405 -1.242 C20 VY7 14 VY7 C21 C15 C 0 1 N N N -7.638 -4.772 17.781 -4.857 -1.036 -1.269 C21 VY7 15 VY7 C22 C16 C 0 1 N N N -7.129 -5.618 16.616 -5.749 -1.277 -0.049 C22 VY7 16 VY7 C23 C17 C 0 1 N N N -5.639 -5.369 16.347 -4.949 -0.987 1.224 C23 VY7 17 VY7 C24 C18 C 0 1 N N N -4.831 -5.705 17.609 -4.432 0.452 1.179 C24 VY7 18 VY7 C25 C19 C 0 1 N N N -8.037 -5.342 15.357 -6.213 -2.711 -0.038 C25 VY7 19 VY7 C28 C20 C 0 1 Y N N -0.671 -1.363 12.798 6.093 -1.820 0.009 C28 VY7 20 VY7 N01 N1 N 0 1 N N N -1.232 2.132 12.924 8.486 0.819 0.029 N01 VY7 21 VY7 N03 N2 N 0 1 Y N N -1.635 0.551 14.499 6.151 0.877 0.021 N03 VY7 22 VY7 N07 N3 N 0 1 N N N -1.630 -2.625 16.109 2.636 -0.301 0.009 N07 VY7 23 VY7 N19 N4 N 0 1 N N N -5.315 -5.002 18.815 -3.583 0.631 -0.006 N19 VY7 24 VY7 N29 N5 N 0 1 N N N -0.184 -2.282 11.921 6.072 -3.205 -0.004 N29 VY7 25 VY7 N30 N6 N 0 1 Y N N -0.703 -0.075 12.418 7.247 -1.161 0.019 N30 VY7 26 VY7 O10 O1 O 0 1 N N N -1.250 -4.642 17.034 0.637 -1.262 0.002 O10 VY7 27 VY7 O12 O2 O 0 1 N N N -3.377 -3.106 18.760 -0.819 0.900 -0.002 O12 VY7 28 VY7 O26 O3 O 0 1 N N N -7.673 -4.426 14.595 -5.865 -3.464 -0.917 O26 VY7 29 VY7 O27 O4 O 0 1 N N N -9.043 -6.083 15.279 -7.011 -3.151 0.947 O27 VY7 30 VY7 H1 H1 H 0 1 N N N -1.383 -3.153 19.244 0.882 1.657 0.894 H1 VY7 31 VY7 H2 H2 H 0 1 N N N -1.931 -1.720 18.310 0.888 1.657 -0.886 H2 VY7 32 VY7 H3 H3 H 0 1 N N N -1.908 -2.897 20.903 0.063 3.365 -0.004 H3 VY7 33 VY7 H4 H4 H 0 1 N N N -2.129 -4.250 22.960 -1.348 5.382 -0.018 H4 VY7 34 VY7 H5 H5 H 0 1 N N N -3.865 -5.997 23.071 -3.799 5.175 -0.026 H5 VY7 35 VY7 H6 H6 H 0 1 N N N -5.371 -6.378 21.177 -4.852 2.950 -0.020 H6 VY7 36 VY7 H7 H7 H 0 1 N N N -1.991 -3.700 14.293 3.248 -2.106 -0.881 H7 VY7 37 VY7 H8 H8 H 0 1 N N N -0.262 -3.576 14.764 3.242 -2.106 0.903 H8 VY7 38 VY7 H9 H9 H 0 1 N N N -1.557 -0.698 17.012 3.402 1.442 0.904 H9 VY7 39 VY7 H10 H10 H 0 1 N N N -3.143 -1.139 16.292 3.408 1.443 -0.880 H10 VY7 40 VY7 H11 H11 H 0 1 N N N -7.025 -4.221 19.761 -3.695 0.575 -2.102 H11 VY7 41 VY7 H12 H12 H 0 1 N N N -7.062 -5.990 19.450 -5.187 1.093 -1.281 H12 VY7 42 VY7 H13 H13 H 0 1 N N N -7.586 -3.708 17.505 -5.434 -1.199 -2.180 H13 VY7 43 VY7 H14 H14 H 0 1 N N N -8.682 -5.044 17.997 -4.013 -1.725 -1.245 H14 VY7 44 VY7 H15 H15 H 0 1 N N N -7.252 -6.677 16.885 -6.615 -0.615 -0.094 H15 VY7 45 VY7 H16 H16 H 0 1 N N N -5.304 -6.007 15.516 -5.592 -1.116 2.095 H16 VY7 46 VY7 H17 H17 H 0 1 N N N -5.485 -4.312 16.083 -4.106 -1.675 1.288 H17 VY7 47 VY7 H18 H18 H 0 1 N N N -4.895 -6.789 17.787 -5.275 1.140 1.129 H18 VY7 48 VY7 H19 H19 H 0 1 N N N -3.782 -5.423 17.438 -3.849 0.657 2.077 H19 VY7 49 VY7 H20 H20 H 0 1 N N N -0.867 2.240 11.999 8.515 1.788 0.029 H20 VY7 50 VY7 H21 H21 H 0 1 N N N -2.179 2.452 12.948 9.311 0.309 0.031 H21 VY7 51 VY7 H22 H22 H 0 1 N N N 0.092 -1.824 11.076 5.225 -3.678 -0.009 H22 VY7 52 VY7 H23 H23 H 0 1 N N N 0.608 -2.741 12.325 6.905 -3.703 -0.009 H23 VY7 53 VY7 H24 H24 H 0 1 N N N -9.547 -5.853 14.507 -7.282 -4.079 0.910 H24 VY7 54 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal VY7 N29 C28 SING N N 1 VY7 N30 C28 DOUB Y N 2 VY7 N30 C02 SING Y N 3 VY7 C28 C05 SING Y N 4 VY7 N01 C02 SING N N 5 VY7 C02 N03 DOUB Y N 6 VY7 C05 C06 SING N N 7 VY7 C05 C04 DOUB Y N 8 VY7 N03 C04 SING Y N 9 VY7 O26 C25 DOUB N N 10 VY7 C06 N07 SING N N 11 VY7 C04 C08 SING N N 12 VY7 O27 C25 SING N N 13 VY7 C25 C22 SING N N 14 VY7 N07 C08 SING N N 15 VY7 N07 C09 SING N N 16 VY7 C23 C22 SING N N 17 VY7 C23 C24 SING N N 18 VY7 C22 C21 SING N N 19 VY7 O10 C09 DOUB N N 20 VY7 C09 C11 SING N N 21 VY7 C24 N19 SING N N 22 VY7 C21 C20 SING N N 23 VY7 C11 O12 SING N N 24 VY7 O12 C13 SING N N 25 VY7 N19 C20 SING N N 26 VY7 N19 C18 SING N N 27 VY7 C13 C18 DOUB Y N 28 VY7 C13 C14 SING Y N 29 VY7 C18 C17 SING Y N 30 VY7 C14 C15 DOUB Y N 31 VY7 C17 C16 DOUB Y N 32 VY7 C15 C16 SING Y N 33 VY7 C11 H1 SING N N 34 VY7 C11 H2 SING N N 35 VY7 C14 H3 SING N N 36 VY7 C15 H4 SING N N 37 VY7 C16 H5 SING N N 38 VY7 C17 H6 SING N N 39 VY7 C06 H7 SING N N 40 VY7 C06 H8 SING N N 41 VY7 C08 H9 SING N N 42 VY7 C08 H10 SING N N 43 VY7 C20 H11 SING N N 44 VY7 C20 H12 SING N N 45 VY7 C21 H13 SING N N 46 VY7 C21 H14 SING N N 47 VY7 C22 H15 SING N N 48 VY7 C23 H16 SING N N 49 VY7 C23 H17 SING N N 50 VY7 C24 H18 SING N N 51 VY7 C24 H19 SING N N 52 VY7 N01 H20 SING N N 53 VY7 N01 H21 SING N N 54 VY7 N29 H22 SING N N 55 VY7 N29 H23 SING N N 56 VY7 O27 H24 SING N N 57 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor VY7 SMILES ACDLabs 12.01 "C(Oc1c(cccc1)N2CCC(CC2)C(=O)O)C(N3Cc4c(C3)nc(N)nc4N)=O" VY7 InChI InChI 1.03 "InChI=1S/C20H24N6O4/c21-18-13-9-26(10-14(13)23-20(22)24-18)17(27)11-30-16-4-2-1-3-15(16)25-7-5-12(6-8-25)19(28)29/h1-4,12H,5-11H2,(H,28,29)(H4,21,22,23,24)" VY7 InChIKey InChI 1.03 GJSALIBRKRZNLE-UHFFFAOYSA-N VY7 SMILES_CANONICAL CACTVS 3.385 "Nc1nc(N)c2CN(Cc2n1)C(=O)COc3ccccc3N4CCC(CC4)C(O)=O" VY7 SMILES CACTVS 3.385 "Nc1nc(N)c2CN(Cc2n1)C(=O)COc3ccccc3N4CCC(CC4)C(O)=O" VY7 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1ccc(c(c1)N2CCC(CC2)C(=O)O)OCC(=O)N3Cc4c(nc(nc4N)N)C3" VY7 SMILES "OpenEye OEToolkits" 2.0.7 "c1ccc(c(c1)N2CCC(CC2)C(=O)O)OCC(=O)N3Cc4c(nc(nc4N)N)C3" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier VY7 "SYSTEMATIC NAME" ACDLabs 12.01 "1-{2-[2-(2,4-diamino-5,7-dihydro-6H-pyrrolo[3,4-d]pyrimidin-6-yl)-2-oxoethoxy]phenyl}piperidine-4-carboxylic acid" VY7 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "1-[2-[2-[2,4-bis(azanyl)-5,7-dihydropyrrolo[3,4-d]pyrimidin-6-yl]-2-oxidanylidene-ethoxy]phenyl]piperidine-4-carboxylic acid" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site VY7 "Create component" 2020-09-21 RCSB VY7 "Initial release" 2021-03-17 RCSB ##