data_VY8 # _chem_comp.id VY8 _chem_comp.name "1-[2-(dimethylamino)ethyl]-3-(2-methoxyphenyl)thiourea" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C12 H19 N3 O S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-04-13 _chem_comp.pdbx_modified_date 2024-04-19 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 253.364 _chem_comp.one_letter_code ? _chem_comp.three_letter_code VY8 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8ORC _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal VY8 C10 C1 C 0 1 Y N N N N N 27.004 19.513 13.005 -2.043 0.110 -0.425 C10 VY8 1 VY8 C13 C2 C 0 1 N N N N N N 27.381 18.528 16.502 -4.281 -2.663 0.453 C13 VY8 2 VY8 C15 C3 C 0 1 Y N N N N N 24.666 20.660 14.087 -4.473 1.387 -0.056 C15 VY8 3 VY8 C17 C4 C 0 1 Y N N N N N 26.163 20.328 12.246 -2.139 1.484 -0.591 C17 VY8 4 VY8 C11 C5 C 0 1 Y N N N N N 26.644 19.288 14.350 -3.172 -0.626 -0.072 C11 VY8 5 VY8 C14 C6 C 0 1 Y N N N N N 25.480 19.853 14.875 -4.385 0.017 0.111 C14 VY8 6 VY8 C16 C7 C 0 1 Y N N N N N 25.013 20.895 12.766 -3.353 2.118 -0.407 C16 VY8 7 VY8 C02 C8 C 0 1 N N N N N N 29.400 19.590 12.401 0.313 -0.007 -0.104 C02 VY8 8 VY8 C04 C9 C 0 1 N N N N N N 30.736 21.686 12.948 2.733 0.010 0.177 C04 VY8 9 VY8 C05 C10 C 0 1 N N N N N N 30.790 22.687 11.742 3.939 -0.809 -0.287 C05 VY8 10 VY8 C07 C11 C 0 1 N N N N N N 30.004 21.840 9.534 6.317 -1.120 0.047 C07 VY8 11 VY8 C08 C12 C 0 1 N N N N N N 32.302 22.614 9.748 5.421 1.106 -0.280 C08 VY8 12 VY8 N03 N1 N 0 1 N N N N N N 29.477 20.881 12.940 1.507 -0.566 -0.381 N03 VY8 13 VY8 N06 N2 N 0 1 N N N N N N 31.160 21.945 10.486 5.169 -0.232 0.272 N06 VY8 14 VY8 N09 N3 N 0 1 N N N N N N 28.177 18.945 12.447 -0.815 -0.536 -0.617 N09 VY8 15 VY8 O12 O1 O 0 1 N N N N N N 27.466 18.473 15.103 -3.083 -1.973 0.091 O12 VY8 16 VY8 S01 S1 S 0 1 N N N N N N 30.765 18.900 11.728 0.229 1.378 0.900 S01 VY8 17 VY8 H133 H1 H 0 0 N N N N N N 28.099 17.820 16.942 -4.072 -3.728 0.552 H133 VY8 18 VY8 H131 H2 H 0 0 N N N N N N 27.615 19.547 16.844 -4.650 -2.276 1.403 H131 VY8 19 VY8 H132 H3 H 0 0 N N N N N N 26.362 18.260 16.818 -5.036 -2.511 -0.319 H132 VY8 20 VY8 H151 H4 H 0 0 N N N N N N 23.771 21.100 14.501 -5.420 1.887 0.087 H151 VY8 21 VY8 H171 H5 H 0 0 N N N N N N 26.419 20.523 11.215 -1.266 2.057 -0.865 H171 VY8 22 VY8 H141 H6 H 0 0 N N N N N N 25.209 19.662 15.903 -5.261 -0.551 0.385 H141 VY8 23 VY8 H161 H7 H 0 0 N N N N N N 24.388 21.519 12.144 -3.427 3.188 -0.537 H161 VY8 24 VY8 H041 H8 H 0 0 N N N N N N 31.596 21.004 12.884 2.680 -0.008 1.266 H041 VY8 25 VY8 H042 H9 H 0 0 N N N N N N 30.789 22.256 13.887 2.840 1.039 -0.165 H042 VY8 26 VY8 H052 H10 H 0 0 N N N N N N 31.543 23.463 11.944 3.833 -1.839 0.055 H052 VY8 27 VY8 H051 H11 H 0 0 N N N N N N 29.804 23.157 11.612 3.992 -0.792 -1.376 H051 VY8 28 VY8 H071 H12 H 0 0 N N N N N N 29.155 21.357 10.039 7.214 -0.668 0.471 H071 VY8 29 VY8 H073 H13 H 0 0 N N N N N N 29.709 22.847 9.203 6.133 -2.081 0.526 H073 VY8 30 VY8 H072 H14 H 0 0 N N N N N N 30.301 21.239 8.662 6.457 -1.268 -1.024 H072 VY8 31 VY8 H083 H15 H 0 0 N N N N N N 33.169 22.707 10.419 5.597 1.028 -1.353 H083 VY8 32 VY8 H081 H16 H 0 0 N N N N N N 32.579 22.007 8.874 4.555 1.742 -0.100 H081 VY8 33 VY8 H082 H17 H 0 0 N N N N N N 31.987 23.614 9.415 6.297 1.539 0.202 H082 VY8 34 VY8 H031 H18 H 0 0 N N N N N N 28.652 21.282 13.338 1.555 -1.351 -0.949 H031 VY8 35 VY8 H091 H20 H 0 0 N N N N N N 28.117 18.023 12.064 -0.776 -1.365 -1.120 H091 VY8 36 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal VY8 C07 N06 SING N N 1 VY8 C08 N06 SING N N 2 VY8 N06 C05 SING N N 3 VY8 S01 C02 DOUB N N 4 VY8 C05 C04 SING N N 5 VY8 C17 C16 DOUB Y N 6 VY8 C17 C10 SING Y N 7 VY8 C02 N09 SING N N 8 VY8 C02 N03 SING N N 9 VY8 N09 C10 SING N N 10 VY8 C16 C15 SING Y N 11 VY8 N03 C04 SING N N 12 VY8 C10 C11 DOUB Y N 13 VY8 C15 C14 DOUB Y N 14 VY8 C11 C14 SING Y N 15 VY8 C11 O12 SING N N 16 VY8 O12 C13 SING N N 17 VY8 C13 H133 SING N N 18 VY8 C13 H131 SING N N 19 VY8 C13 H132 SING N N 20 VY8 C15 H151 SING N N 21 VY8 C17 H171 SING N N 22 VY8 C14 H141 SING N N 23 VY8 C16 H161 SING N N 24 VY8 C04 H041 SING N N 25 VY8 C04 H042 SING N N 26 VY8 C05 H052 SING N N 27 VY8 C05 H051 SING N N 28 VY8 C07 H071 SING N N 29 VY8 C07 H073 SING N N 30 VY8 C07 H072 SING N N 31 VY8 C08 H083 SING N N 32 VY8 C08 H081 SING N N 33 VY8 C08 H082 SING N N 34 VY8 N03 H031 SING N N 35 VY8 N09 H091 SING N N 36 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor VY8 InChI InChI 1.06 "InChI=1S/C12H19N3OS/c1-15(2)9-8-13-12(17)14-10-6-4-5-7-11(10)16-3/h4-7H,8-9H2,1-3H3,(H2,13,14,17)" VY8 InChIKey InChI 1.06 WGGARZSAXKSVFS-UHFFFAOYSA-N VY8 SMILES_CANONICAL CACTVS 3.385 "COc1ccccc1NC(=S)NCCN(C)C" VY8 SMILES CACTVS 3.385 "COc1ccccc1NC(=S)NCCN(C)C" VY8 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CN(C)CCNC(=S)Nc1ccccc1OC" VY8 SMILES "OpenEye OEToolkits" 2.0.7 "CN(C)CCNC(=S)Nc1ccccc1OC" # _pdbx_chem_comp_identifier.comp_id VY8 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "1-[2-(dimethylamino)ethyl]-3-(2-methoxyphenyl)thiourea" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site VY8 "Create component" 2023-04-13 PDBE VY8 "Initial release" 2024-04-24 RCSB #