data_VYC # _chem_comp.id VYC _chem_comp.name "5-[[5-[[2-chloranyl-3-(2-fluorophenyl)phenyl]methoxy]-2-[(~{E})-2-hydroxyethyliminomethyl]phenoxy]methyl]pyridine-3-carbonitrile" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C29 H25 Cl F N3 O3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-04-13 _chem_comp.pdbx_modified_date 2023-07-28 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 517.979 _chem_comp.one_letter_code ? _chem_comp.three_letter_code VYC _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8OR1 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal VYC C15 C1 C 0 1 Y N N -31.680 39.958 -13.845 7.054 0.687 -0.173 C15 VYC 1 VYC C16 C2 C 0 1 Y N N -32.337 40.454 -12.724 7.485 -0.257 -1.106 C16 VYC 2 VYC C17 C3 C 0 1 Y N N -32.418 39.780 -11.523 8.800 -0.684 -1.095 C17 VYC 3 VYC C18 C4 C 0 1 Y N N -31.823 38.544 -11.422 9.686 -0.176 -0.162 C18 VYC 4 VYC C19 C5 C 0 1 Y N N -31.161 38.002 -12.499 9.262 0.759 0.764 C19 VYC 5 VYC C20 C6 C 0 1 Y N N -31.088 38.698 -13.695 7.952 1.193 0.763 C20 VYC 6 VYC C21 C7 C 0 1 Y N N -32.792 39.078 -21.593 -1.435 0.310 0.534 C21 VYC 7 VYC C22 C8 C 0 1 Y N N -32.450 38.254 -22.657 -2.575 -0.435 0.794 C22 VYC 8 VYC C23 C9 C 0 1 N N N -34.693 37.784 -23.515 -3.836 1.541 0.400 C23 VYC 9 VYC C24 C10 C 0 1 Y N N -35.534 36.587 -23.867 -5.267 2.015 0.383 C24 VYC 10 VYC C25 C11 C 0 1 Y N N -36.370 36.600 -24.974 -6.012 1.948 -0.781 C25 VYC 11 VYC C26 C12 C 0 1 Y N N -37.146 35.482 -25.288 -7.337 2.400 -0.748 C26 VYC 12 VYC C27 C13 C 0 1 Y N N -37.051 34.364 -24.449 -7.850 2.897 0.452 C27 VYC 13 VYC C28 C14 C 0 1 Y N N -35.519 35.429 -23.103 -5.850 2.517 1.533 C28 VYC 14 VYC O1 O1 O 0 1 N N N -31.511 33.406 -24.307 -5.285 -5.030 -1.685 O1 VYC 15 VYC C1 C15 C 0 1 N N N -30.611 34.136 -25.126 -6.173 -4.161 -0.978 C1 VYC 16 VYC C2 C16 C 0 1 N N N -31.264 35.342 -25.743 -5.547 -3.774 0.364 C2 VYC 17 VYC N1 N1 N 0 1 N N N -31.727 36.299 -24.695 -4.333 -2.981 0.127 N1 VYC 18 VYC C3 C17 C 0 1 N N N -30.758 37.391 -24.357 -3.704 -2.591 1.396 C3 VYC 19 VYC C4 C18 C 0 1 Y N N -31.160 38.275 -23.209 -2.465 -1.781 1.114 C4 VYC 20 VYC C5 C19 C 0 1 Y N N -30.232 39.172 -22.659 -1.221 -2.379 1.174 C5 VYC 21 VYC C6 C20 C 0 1 Y N N -30.568 40.006 -21.605 -0.083 -1.638 0.916 C6 VYC 22 VYC C7 C21 C 0 1 Y N N -31.846 39.959 -21.076 -0.187 -0.293 0.595 C7 VYC 23 VYC O2 O2 O 0 1 N N N -32.160 40.770 -20.024 0.932 0.433 0.335 O2 VYC 24 VYC C8 C22 C 0 1 N N N -32.569 40.129 -18.798 2.183 -0.252 0.417 C8 VYC 25 VYC C9 C23 C 0 1 Y N N -32.019 40.776 -17.552 3.302 0.706 0.099 C9 VYC 26 VYC C10 C24 C 0 1 Y N N -31.436 42.040 -17.579 3.017 2.025 -0.202 C10 VYC 27 VYC C11 C25 C 0 1 Y N N -30.940 42.625 -16.426 4.039 2.911 -0.494 C11 VYC 28 VYC C12 C26 C 0 1 Y N N -31.024 41.945 -15.222 5.351 2.482 -0.486 C12 VYC 29 VYC C13 C27 C 0 1 Y N N -31.598 40.678 -15.148 5.646 1.154 -0.183 C13 VYC 30 VYC C14 C28 C 0 1 Y N N -32.093 40.110 -16.324 4.612 0.267 0.116 C14 VYC 31 VYC CL1 CL1 CL 0 0 N N N -32.819 38.523 -16.257 4.970 -1.388 0.500 CL1 VYC 32 VYC F1 F1 F 0 1 N N N -32.934 41.670 -12.798 6.620 -0.754 -2.017 F1 VYC 33 VYC O3 O3 O 0 1 N N N -33.354 37.355 -23.198 -3.799 0.153 0.735 O3 VYC 34 VYC N2 N2 N 0 1 Y N N -36.252 34.336 -23.372 -7.100 2.941 1.533 N2 VYC 35 VYC C29 C29 C 0 1 N N N -38.021 35.463 -26.438 -8.152 2.354 -1.924 C29 VYC 36 VYC N3 N3 N 0 1 N N N -38.695 35.421 -27.362 -8.799 2.317 -2.858 N3 VYC 37 VYC H1 H1 H 0 1 N N N -32.937 40.213 -10.681 9.136 -1.415 -1.816 H1 VYC 38 VYC H2 H2 H 0 1 N N N -31.876 37.996 -10.493 10.712 -0.512 -0.157 H2 VYC 39 VYC H3 H3 H 0 1 N N N -30.697 37.031 -12.412 9.959 1.151 1.491 H3 VYC 40 VYC H4 H4 H 0 1 N N N -30.563 38.259 -14.530 7.624 1.924 1.487 H4 VYC 41 VYC H5 H5 H 0 1 N N N -33.785 39.036 -21.170 -1.518 1.356 0.280 H5 VYC 42 VYC H6 H6 H 0 1 N N N -34.664 38.475 -24.370 -3.393 1.689 -0.585 H6 VYC 43 VYC H7 H7 H 0 1 N N N -35.130 38.296 -22.645 -3.274 2.109 1.141 H7 VYC 44 VYC H8 H8 H 0 1 N N N -36.421 37.481 -25.597 -5.582 1.558 -1.692 H8 VYC 45 VYC H9 H9 H 0 1 N N N -37.644 33.491 -24.678 -8.870 3.250 0.493 H9 VYC 46 VYC H10 H10 H 0 1 N N N -34.876 35.405 -22.236 -5.272 2.566 2.443 H10 VYC 47 VYC H11 H11 H 0 1 N N N -31.064 32.654 -23.936 -5.618 -5.316 -2.546 H11 VYC 48 VYC H12 H12 H 0 1 N N N -30.248 33.478 -25.930 -6.349 -3.263 -1.569 H12 VYC 49 VYC H13 H13 H 0 1 N N N -29.761 34.468 -24.512 -7.119 -4.673 -0.803 H13 VYC 50 VYC H14 H14 H 0 1 N N N -30.538 35.848 -26.396 -6.260 -3.185 0.940 H14 VYC 51 VYC H15 H15 H 0 1 N N N -32.129 35.016 -26.339 -5.289 -4.677 0.918 H15 VYC 52 VYC H16 H16 H 0 1 N N N -29.794 36.924 -24.105 -4.404 -1.993 1.980 H16 VYC 53 VYC H17 H17 H 0 1 N N N -29.233 39.213 -23.067 -1.138 -3.426 1.424 H17 VYC 54 VYC H18 H18 H 0 1 N N N -29.837 40.689 -21.198 0.889 -2.108 0.964 H18 VYC 55 VYC H19 H19 H 0 1 N N N -33.667 40.155 -18.745 2.317 -0.646 1.424 H19 VYC 56 VYC H20 H20 H 0 1 N N N -32.227 39.084 -18.824 2.194 -1.074 -0.299 H20 VYC 57 VYC H21 H21 H 0 1 N N N -31.369 42.574 -18.516 1.992 2.366 -0.209 H21 VYC 58 VYC H22 H22 H 0 1 N N N -30.490 43.606 -16.465 3.810 3.939 -0.729 H22 VYC 59 VYC H23 H23 H 0 1 N N N -30.638 42.405 -14.325 6.148 3.174 -0.714 H23 VYC 60 VYC H24 H24 H 0 1 N N N -32.573 36.724 -25.016 -3.683 -3.482 -0.460 H24 VYC 61 VYC H25 H25 H 0 1 N N N -30.636 38.025 -25.248 -3.433 -3.485 1.958 H25 VYC 62 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal VYC N3 C29 TRIP N N 1 VYC C29 C26 SING N N 2 VYC C2 C1 SING N N 3 VYC C2 N1 SING N N 4 VYC C26 C25 DOUB Y N 5 VYC C26 C27 SING Y N 6 VYC C1 O1 SING N N 7 VYC C25 C24 SING Y N 8 VYC N1 C3 SING N N 9 VYC C27 N2 DOUB Y N 10 VYC C3 C4 SING N N 11 VYC C24 C23 SING N N 12 VYC C24 C28 DOUB Y N 13 VYC C23 O3 SING N N 14 VYC N2 C28 SING Y N 15 VYC C4 C5 DOUB Y N 16 VYC C4 C22 SING Y N 17 VYC O3 C22 SING N N 18 VYC C5 C6 SING Y N 19 VYC C22 C21 DOUB Y N 20 VYC C6 C7 DOUB Y N 21 VYC C21 C7 SING Y N 22 VYC C7 O2 SING N N 23 VYC O2 C8 SING N N 24 VYC C8 C9 SING N N 25 VYC C10 C9 DOUB Y N 26 VYC C10 C11 SING Y N 27 VYC C9 C14 SING Y N 28 VYC C11 C12 DOUB Y N 29 VYC C14 CL1 SING N N 30 VYC C14 C13 DOUB Y N 31 VYC C12 C13 SING Y N 32 VYC C13 C15 SING N N 33 VYC C15 C20 DOUB Y N 34 VYC C15 C16 SING Y N 35 VYC C20 C19 SING Y N 36 VYC F1 C16 SING N N 37 VYC C16 C17 DOUB Y N 38 VYC C19 C18 DOUB Y N 39 VYC C17 C18 SING Y N 40 VYC C17 H1 SING N N 41 VYC C18 H2 SING N N 42 VYC C19 H3 SING N N 43 VYC C20 H4 SING N N 44 VYC C21 H5 SING N N 45 VYC C23 H6 SING N N 46 VYC C23 H7 SING N N 47 VYC C25 H8 SING N N 48 VYC C27 H9 SING N N 49 VYC C28 H10 SING N N 50 VYC O1 H11 SING N N 51 VYC C1 H12 SING N N 52 VYC C1 H13 SING N N 53 VYC C2 H14 SING N N 54 VYC C2 H15 SING N N 55 VYC C3 H16 SING N N 56 VYC C5 H17 SING N N 57 VYC C6 H18 SING N N 58 VYC C8 H19 SING N N 59 VYC C8 H20 SING N N 60 VYC C10 H21 SING N N 61 VYC C11 H22 SING N N 62 VYC C12 H23 SING N N 63 VYC N1 H24 SING N N 64 VYC C3 H25 SING N N 65 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor VYC InChI InChI 1.06 "InChI=1S/C29H25ClFN3O3/c30-29-23(4-3-6-26(29)25-5-1-2-7-27(25)31)19-36-24-9-8-22(17-33-10-11-35)28(13-24)37-18-21-12-20(14-32)15-34-16-21/h1-9,12-13,15-16,33,35H,10-11,17-19H2" VYC InChIKey InChI 1.06 DSELNKYPNSPLEU-UHFFFAOYSA-N VYC SMILES_CANONICAL CACTVS 3.385 "OCCNCc1ccc(OCc2cccc(c2Cl)c3ccccc3F)cc1OCc4cncc(c4)C#N" VYC SMILES CACTVS 3.385 "OCCNCc1ccc(OCc2cccc(c2Cl)c3ccccc3F)cc1OCc4cncc(c4)C#N" VYC SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1ccc(c(c1)c2cccc(c2Cl)COc3ccc(c(c3)OCc4cc(cnc4)C#N)CNCCO)F" VYC SMILES "OpenEye OEToolkits" 2.0.7 "c1ccc(c(c1)c2cccc(c2Cl)COc3ccc(c(c3)OCc4cc(cnc4)C#N)CNCCO)F" # _pdbx_chem_comp_identifier.comp_id VYC _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "5-[[5-[[2-chloranyl-3-(2-fluorophenyl)phenyl]methoxy]-2-[(2-hydroxyethylamino)methyl]phenoxy]methyl]pyridine-3-carbonitrile" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site VYC "Create component" 2023-04-13 PDBE VYC "Modify formula" 2023-07-12 PDBE VYC "Initial release" 2023-08-02 RCSB #