data_VYG # _chem_comp.id VYG _chem_comp.name "6-ethyl-5-[3-({3-[4-(trifluoromethyl)piperidin-1-yl]pyridin-2-yl}oxy)propoxy]pyrimidine-2,4-diamine" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C20 H27 F3 N6 O2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2020-09-21 _chem_comp.pdbx_modified_date 2021-03-12 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 440.463 _chem_comp.one_letter_code ? _chem_comp.three_letter_code VYG _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7K6A _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal VYG C1 C1 C 0 1 N N N -1.466 -0.738 16.253 -5.147 0.917 2.286 C1 VYG 1 VYG C2 C2 C 0 1 Y N N -1.119 -0.330 14.834 -5.791 0.739 0.935 C2 VYG 2 VYG C3 C3 C 0 1 Y N N -1.076 1.313 13.216 -7.687 0.503 -0.356 C3 VYG 3 VYG C4 C4 C 0 1 Y N N -0.255 -0.708 12.644 -5.652 0.486 -1.439 C4 VYG 4 VYG C5 C5 C 0 1 Y N N -0.558 -1.189 13.937 -5.011 0.651 -0.205 C5 VYG 5 VYG C6 C6 C 0 1 N N N -1.238 -3.509 13.882 -2.942 -0.512 -0.039 C6 VYG 6 VYG C7 C7 C 0 1 N N N -0.561 -4.840 14.236 -1.437 -0.235 -0.043 C7 VYG 7 VYG N1 N1 N 0 1 N N N -1.346 2.595 12.866 -9.069 0.424 -0.426 N1 VYG 8 VYG C8 C8 C 0 1 N N N -0.287 -4.917 15.743 -0.675 -1.559 0.053 C8 VYG 9 VYG C9 C9 C 0 1 Y N N -1.582 -4.571 17.778 1.555 -2.376 0.130 C9 VYG 10 VYG C10 C10 C 0 1 Y N N -0.482 -4.401 19.774 1.806 -4.665 0.275 C10 VYG 11 VYG C11 C11 C 0 1 Y N N -1.653 -4.147 20.443 3.183 -4.557 0.281 C11 VYG 12 VYG N2 N2 N 0 1 Y N N -0.517 0.542 12.282 -6.979 0.420 -1.472 N2 VYG 13 VYG C12 C12 C 0 1 Y N N -2.848 -4.095 19.721 3.767 -3.301 0.207 C12 VYG 14 VYG C13 C13 C 0 1 Y N N -2.850 -4.297 18.349 2.937 -2.189 0.130 C13 VYG 15 VYG C14 C14 C 0 1 N N N -5.194 -3.644 18.139 4.245 -0.726 -1.188 C14 VYG 16 VYG C15 C15 C 0 1 N N N -6.288 -3.482 17.070 4.700 0.731 -1.307 C15 VYG 17 VYG C16 C16 C 0 1 N N N -6.641 -4.842 16.433 5.566 1.091 -0.096 C16 VYG 18 VYG C17 C17 C 0 1 N N N -7.716 -4.732 15.401 5.974 2.563 -0.179 C17 VYG 19 VYG C18 C18 C 0 1 N N N -5.378 -5.404 15.771 4.762 0.853 1.185 C18 VYG 20 VYG C19 C19 C 0 1 N N N -4.346 -5.571 16.898 4.306 -0.607 1.232 C19 VYG 21 VYG O1 O1 O 0 1 N N N -1.553 -4.771 16.424 0.730 -1.300 0.049 O1 VYG 22 VYG N3 N3 N 0 1 N N N 0.300 -1.530 11.726 -4.913 0.393 -2.610 N3 VYG 23 VYG N N4 N 0 1 Y N N -1.362 0.936 14.461 -7.110 0.659 0.825 N VYG 24 VYG C C20 C 0 1 N N N -3.002 -0.816 16.408 -5.063 2.408 2.618 C VYG 25 VYG O O2 O 0 1 N N N -0.232 -2.508 14.244 -3.654 0.724 -0.129 O VYG 26 VYG F F1 F 0 1 N N N -8.009 -5.921 14.826 6.765 2.890 0.927 F VYG 27 VYG F1 F2 F 0 1 N N N -7.394 -3.882 14.401 6.703 2.779 -1.354 F1 VYG 28 VYG F2 F3 F 0 1 N N N -8.846 -4.251 15.949 4.828 3.365 -0.187 F2 VYG 29 VYG N4 N5 N 0 1 Y N N -0.470 -4.630 18.444 1.041 -3.591 0.201 N4 VYG 30 VYG N5 N6 N 0 1 N N N -4.008 -4.286 17.561 3.480 -0.901 0.054 N5 VYG 31 VYG H1 H1 H 0 1 N N N -1.026 -1.723 16.469 -5.745 0.409 3.043 H1 VYG 32 VYG H2 H2 H 0 1 N N N -1.064 0.006 16.957 -4.144 0.491 2.270 H2 VYG 33 VYG H3 H3 H 0 1 N N N -1.473 -3.460 12.808 -3.198 -1.142 -0.891 H3 VYG 34 VYG H4 H4 H 0 1 N N N -2.160 -3.369 14.466 -3.215 -1.022 0.885 H4 VYG 35 VYG H5 H5 H 0 1 N N N -1.221 -5.671 13.945 -1.164 0.274 -0.967 H5 VYG 36 VYG H6 H6 H 0 1 N N N 0.391 -4.919 13.690 -1.181 0.394 0.808 H6 VYG 37 VYG H7 H7 H 0 1 N N N -1.065 2.749 11.919 -9.600 0.484 0.384 H7 VYG 38 VYG H8 H8 H 0 1 N N N -2.328 2.765 12.954 -9.505 0.310 -1.285 H8 VYG 39 VYG H9 H9 H 0 1 N N N 0.164 -5.889 15.993 -0.948 -2.069 0.977 H9 VYG 40 VYG H10 H10 H 0 1 N N N 0.396 -4.108 16.042 -0.932 -2.189 -0.799 H10 VYG 41 VYG H11 H11 H 0 1 N N N 0.448 -4.418 20.323 1.349 -5.641 0.333 H11 VYG 42 VYG H12 H12 H 0 1 N N N -1.651 -3.990 21.511 3.799 -5.442 0.343 H12 VYG 43 VYG H13 H13 H 0 1 N N N -3.777 -3.896 20.235 4.841 -3.190 0.209 H13 VYG 44 VYG H14 H14 H 0 1 N N N -4.917 -2.653 18.528 3.617 -0.981 -2.041 H14 VYG 45 VYG H15 H15 H 0 1 N N N -5.579 -4.266 18.961 5.118 -1.378 -1.172 H15 VYG 46 VYG H16 H16 H 0 1 N N N -5.927 -2.800 16.286 5.281 0.857 -2.220 H16 VYG 47 VYG H17 H17 H 0 1 N N N -7.189 -3.059 17.538 3.827 1.383 -1.337 H17 VYG 48 VYG H18 H18 H 0 1 N N N -6.965 -5.532 17.226 6.458 0.465 -0.088 H18 VYG 49 VYG H19 H19 H 0 1 N N N -5.592 -6.376 15.302 5.387 1.066 2.052 H19 VYG 50 VYG H20 H20 H 0 1 N N N -5.002 -4.705 15.010 3.890 1.507 1.195 H20 VYG 51 VYG H21 H21 H 0 1 N N N -4.757 -6.259 17.652 5.178 -1.260 1.236 H21 VYG 52 VYG H22 H22 H 0 1 N N N -3.427 -6.000 16.473 3.721 -0.776 2.136 H22 VYG 53 VYG H23 H23 H 0 1 N N N 0.432 -1.032 10.869 -3.945 0.441 -2.578 H23 VYG 54 VYG H24 H24 H 0 1 N N N 1.184 -1.856 12.062 -5.365 0.278 -3.461 H24 VYG 55 VYG H25 H25 H 0 1 N N N -3.253 -1.112 17.437 -6.059 2.848 2.572 H25 VYG 56 VYG H26 H26 H 0 1 N N N -3.443 0.168 16.192 -4.656 2.534 3.622 H26 VYG 57 VYG H27 H27 H 0 1 N N N -3.404 -1.560 15.705 -4.413 2.905 1.898 H27 VYG 58 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal VYG N3 C4 SING N N 1 VYG N2 C4 DOUB Y N 2 VYG N2 C3 SING Y N 3 VYG C4 C5 SING Y N 4 VYG N1 C3 SING N N 5 VYG C3 N DOUB Y N 6 VYG C6 C7 SING N N 7 VYG C6 O SING N N 8 VYG C5 O SING N N 9 VYG C5 C2 DOUB Y N 10 VYG C7 C8 SING N N 11 VYG F1 C17 SING N N 12 VYG N C2 SING Y N 13 VYG F C17 SING N N 14 VYG C2 C1 SING N N 15 VYG C17 F2 SING N N 16 VYG C17 C16 SING N N 17 VYG C8 O1 SING N N 18 VYG C18 C16 SING N N 19 VYG C18 C19 SING N N 20 VYG C1 C SING N N 21 VYG O1 C9 SING N N 22 VYG C16 C15 SING N N 23 VYG C19 N5 SING N N 24 VYG C15 C14 SING N N 25 VYG N5 C14 SING N N 26 VYG N5 C13 SING N N 27 VYG C9 C13 DOUB Y N 28 VYG C9 N4 SING Y N 29 VYG C13 C12 SING Y N 30 VYG N4 C10 DOUB Y N 31 VYG C12 C11 DOUB Y N 32 VYG C10 C11 SING Y N 33 VYG C1 H1 SING N N 34 VYG C1 H2 SING N N 35 VYG C6 H3 SING N N 36 VYG C6 H4 SING N N 37 VYG C7 H5 SING N N 38 VYG C7 H6 SING N N 39 VYG N1 H7 SING N N 40 VYG N1 H8 SING N N 41 VYG C8 H9 SING N N 42 VYG C8 H10 SING N N 43 VYG C10 H11 SING N N 44 VYG C11 H12 SING N N 45 VYG C12 H13 SING N N 46 VYG C14 H14 SING N N 47 VYG C14 H15 SING N N 48 VYG C15 H16 SING N N 49 VYG C15 H17 SING N N 50 VYG C16 H18 SING N N 51 VYG C18 H19 SING N N 52 VYG C18 H20 SING N N 53 VYG C19 H21 SING N N 54 VYG C19 H22 SING N N 55 VYG N3 H23 SING N N 56 VYG N3 H24 SING N N 57 VYG C H25 SING N N 58 VYG C H26 SING N N 59 VYG C H27 SING N N 60 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor VYG SMILES ACDLabs 12.01 "C(C)c1c(c(nc(n1)N)N)OCCCOc2c(cccn2)N3CCC(C(F)(F)F)CC3" VYG InChI InChI 1.03 "InChI=1S/C20H27F3N6O2/c1-2-14-16(17(24)28-19(25)27-14)30-11-4-12-31-18-15(5-3-8-26-18)29-9-6-13(7-10-29)20(21,22)23/h3,5,8,13H,2,4,6-7,9-12H2,1H3,(H4,24,25,27,28)" VYG InChIKey InChI 1.03 KHPDUBAKUFVHPS-UHFFFAOYSA-N VYG SMILES_CANONICAL CACTVS 3.385 "CCc1nc(N)nc(N)c1OCCCOc2ncccc2N3CCC(CC3)C(F)(F)F" VYG SMILES CACTVS 3.385 "CCc1nc(N)nc(N)c1OCCCOc2ncccc2N3CCC(CC3)C(F)(F)F" VYG SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CCc1c(c(nc(n1)N)N)OCCCOc2c(cccn2)N3CCC(CC3)C(F)(F)F" VYG SMILES "OpenEye OEToolkits" 2.0.7 "CCc1c(c(nc(n1)N)N)OCCCOc2c(cccn2)N3CCC(CC3)C(F)(F)F" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier VYG "SYSTEMATIC NAME" ACDLabs 12.01 "6-ethyl-5-[3-({3-[4-(trifluoromethyl)piperidin-1-yl]pyridin-2-yl}oxy)propoxy]pyrimidine-2,4-diamine" VYG "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "6-ethyl-5-[3-[3-[4-(trifluoromethyl)piperidin-1-yl]pyridin-2-yl]oxypropoxy]pyrimidine-2,4-diamine" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site VYG "Create component" 2020-09-21 RCSB VYG "Initial release" 2021-03-17 RCSB ##