data_VYH # _chem_comp.id VYH _chem_comp.name "8-(4-azanylbutyl)-6-[2-chloranyl-4-(6-methylpyridin-2-yl)phenyl]-2-(3-morpholin-4-ylpropylamino)pyrido[2,3-d]pyrimidin-7-one" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C30 H36 Cl N7 O2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-09-20 _chem_comp.pdbx_modified_date 2023-11-03 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 562.106 _chem_comp.one_letter_code ? _chem_comp.three_letter_code VYH _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8QLS _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal VYH N1 N1 N 0 1 N N N N N N -34.573 -2.578 20.303 4.232 -0.392 0.405 N1 VYH 1 VYH C4 C1 C 0 1 Y N N N N N -29.440 -7.646 9.820 -8.377 -0.340 -1.243 C4 VYH 2 VYH C5 C2 C 0 1 Y N N N N N -29.871 -6.330 9.927 -7.680 -0.980 -0.219 C5 VYH 3 VYH C6 C3 C 0 1 Y N N N N N -30.481 -5.804 11.174 -6.216 -0.789 -0.094 C6 VYH 4 VYH C7 C4 C 0 1 Y N N N N N -29.828 -4.853 11.951 -5.514 -1.427 0.928 C7 VYH 5 VYH C8 C5 C 0 1 Y N N N N N -30.386 -4.383 13.127 -4.153 -1.250 1.045 C8 VYH 6 VYH C10 C6 C 0 1 N N N N N N -32.226 -4.273 14.788 -2.013 -0.243 0.264 C10 VYH 7 VYH C13 C7 C 0 1 Y N N N N N -33.198 -5.099 18.314 1.163 -2.016 -0.357 C13 VYH 8 VYH C15 C8 C 0 1 N N N N N N -34.965 -1.178 20.310 5.177 -1.442 0.016 C15 VYH 9 VYH C17 C9 C 0 1 N N N N N N -36.365 0.560 21.464 7.594 -2.053 -0.147 C17 VYH 10 VYH N N2 N 0 1 Y N N N N N -33.735 -4.495 19.378 2.451 -1.764 -0.212 N VYH 11 VYH C11 C10 C 0 1 N N N N N N -32.411 -5.007 15.910 -1.152 -1.238 -0.115 C11 VYH 12 VYH C1 C11 C 0 1 Y N N N N N -29.239 -5.871 7.748 -9.619 -1.955 0.569 C1 VYH 13 VYH C18 C12 C 0 1 N N N N N N -38.078 2.136 22.113 9.305 -0.471 -0.810 C18 VYH 14 VYH O1 O1 O 0 1 N N N N N N -32.469 -2.151 13.783 -2.231 1.899 1.142 O1 VYH 15 VYH C2 C13 C 0 1 Y N N N N N -28.785 -7.178 7.574 -10.373 -1.344 -0.415 C2 VYH 16 VYH C16 C14 C 0 1 N N N N N N -35.967 -0.901 21.406 6.608 -0.956 0.259 C16 VYH 17 VYH C9 C15 C 0 1 Y N N N N N -31.630 -4.841 13.555 -3.476 -0.432 0.139 C9 VYH 18 VYH C12 C16 C 0 1 Y N N N N N -32.950 -4.436 17.107 0.240 -1.028 0.016 C12 VYH 19 VYH C14 C17 C 0 1 Y N N N N N -34.018 -3.190 19.240 2.874 -0.603 0.275 C14 VYH 20 VYH C C18 C 0 1 N N N N N N -29.185 -4.870 6.637 -10.297 -2.845 1.579 C VYH 21 VYH O O2 O 0 1 N N N N N N -38.755 2.340 24.428 11.637 -1.069 -0.615 O VYH 22 VYH C3 C19 C 0 1 Y N N N N N -28.893 -8.071 8.623 -9.744 -0.525 -1.344 C3 VYH 23 VYH C19 C20 C 0 1 N N N N N N -39.202 2.401 23.081 10.720 0.021 -0.492 C19 VYH 24 VYH C20 C21 C 0 1 N N N N N N -38.205 1.056 24.693 11.339 -2.172 0.244 C20 VYH 25 VYH C21 C22 C 0 1 N N N N N N -37.046 0.759 23.781 9.931 -2.687 -0.066 C21 VYH 26 VYH C22 C23 C 0 1 Y N N N N N -33.299 -3.064 17.092 0.728 0.194 0.529 C22 VYH 27 VYH C23 C24 C 0 1 N N N N N N -33.512 -0.915 15.896 0.383 2.447 1.436 C23 VYH 28 VYH C24 C25 C 0 1 N N N N N N -32.466 -0.008 16.512 0.608 3.430 0.286 C24 VYH 29 VYH C25 C26 C 0 1 N N N N N N -31.222 0.071 15.621 1.156 4.746 0.840 C25 VYH 30 VYH C26 C27 C 0 1 N N N N N N -30.098 0.864 16.243 1.381 5.729 -0.311 C26 VYH 31 VYH C27 C28 C 0 1 N N N N N N -32.600 -2.863 14.768 -1.473 1.010 0.798 C27 VYH 32 VYH C28 C29 C 0 1 Y N N N N N -32.291 -5.776 12.762 -4.178 0.206 -0.885 C28 VYH 33 VYH C29 C30 C 0 1 Y N N N N N -31.732 -6.256 11.593 -5.539 0.024 -1.004 C29 VYH 34 VYH N2 N3 N 0 1 N N N N N N -37.483 0.823 22.380 8.968 -1.587 0.086 N2 VYH 35 VYH N3 N4 N 0 1 Y N N N N N -33.822 -2.433 18.147 2.041 0.359 0.640 N3 VYH 36 VYH N4 N5 N 0 1 N N N N N N -33.118 -2.328 15.934 -0.142 1.186 0.905 N4 VYH 37 VYH N5 N6 N 0 1 N N N N N N -28.954 1.005 15.314 1.907 6.994 0.222 N5 VYH 38 VYH N6 N7 N 0 1 Y N N N N N -29.772 -5.449 8.910 -8.318 -1.759 0.646 N6 VYH 39 VYH CL CL1 CL 0 0 N N N N N N -33.863 -6.354 13.215 -3.337 1.224 -2.013 CL VYH 40 VYH H10 H1 H 0 1 N N N N N N -35.403 -3.095 20.513 4.561 0.449 0.759 H10 VYH 41 VYH H5 H2 H 0 1 N N N N N N -29.530 -8.324 10.655 -7.857 0.294 -1.946 H5 VYH 42 VYH H6 H3 H 0 1 N N N N N N -28.868 -4.475 11.631 -6.038 -2.059 1.630 H6 VYH 43 VYH H7 H4 H 0 1 N N N N N N -29.852 -3.654 13.719 -3.610 -1.744 1.837 H7 VYH 44 VYH H9 H5 H 0 1 N N N N N N -32.944 -6.146 18.389 0.827 -2.963 -0.754 H9 VYH 45 VYH H12 H6 H 0 1 N N N N N N -34.073 -0.556 20.473 4.991 -2.337 0.609 H12 VYH 46 VYH H11 H7 H 0 1 N N N N N N -35.416 -0.926 19.339 5.047 -1.674 -1.041 H11 VYH 47 VYH H16 H8 H 0 1 N N N N N N -35.496 1.146 21.798 7.408 -2.948 0.446 H16 VYH 48 VYH H15 H9 H 0 1 N N N N N N -36.658 0.882 20.454 7.464 -2.284 -1.205 H15 VYH 49 VYH H8 H10 H 0 1 N N N N N N -32.144 -6.054 15.902 -1.530 -2.171 -0.508 H8 VYH 50 VYH H18 H11 H 0 1 N N N N N N -37.309 2.914 22.227 8.595 0.342 -0.662 H18 VYH 51 VYH H17 H12 H 0 1 N N N N N N -38.470 2.156 21.086 9.261 -0.809 -1.845 H17 VYH 52 VYH H3 H13 H 0 1 N N N N N N -28.355 -7.488 6.633 -11.438 -1.511 -0.469 H3 VYH 53 VYH H13 H14 H 0 1 N N N N N N -36.867 -1.506 21.224 6.793 -0.062 -0.334 H13 VYH 54 VYH H14 H15 H 0 1 N N N N N N -35.523 -1.186 22.371 6.737 -0.725 1.316 H14 VYH 55 VYH H1 H16 H 0 1 N N N N N N -29.612 -3.916 6.981 -10.314 -3.869 1.207 H1 VYH 56 VYH H H17 H 0 1 N N N N N N -28.139 -4.715 6.333 -9.749 -2.809 2.521 H VYH 57 VYH H2 H18 H 0 1 N N N N N N -29.764 -5.243 5.779 -11.318 -2.500 1.740 H2 VYH 58 VYH H4 H19 H 0 1 N N N N N N -28.554 -9.090 8.509 -10.311 -0.042 -2.126 H4 VYH 59 VYH H20 H20 H 0 1 N N N N N N -39.613 3.403 22.886 10.996 0.810 -1.192 H20 VYH 60 VYH H19 H21 H 0 1 N N N N N N -39.988 1.646 22.931 10.750 0.410 0.526 H19 VYH 61 VYH H22 H22 H 0 1 N N N N N N -37.858 1.023 25.736 12.063 -2.970 0.077 H22 VYH 62 VYH H21 H23 H 0 1 N N N N N N -38.984 0.294 24.542 11.387 -1.848 1.283 H21 VYH 63 VYH H24 H24 H 0 1 N N N N N N -36.250 1.500 23.949 9.897 -3.061 -1.089 H24 VYH 64 VYH H23 H25 H 0 1 N N N N N N -36.661 -0.248 23.997 9.677 -3.491 0.625 H23 VYH 65 VYH H26 H26 H 0 1 N N N N N N -33.664 -0.618 14.848 1.328 2.261 1.946 H26 VYH 66 VYH H25 H27 H 0 1 N N N N N N -34.454 -0.796 16.451 -0.333 2.870 2.141 H25 VYH 67 VYH H27 H28 H 0 1 N N N N N N -32.889 1.001 16.632 1.324 3.006 -0.419 H27 VYH 68 VYH H28 H29 H 0 1 N N N N N N -32.179 -0.405 17.497 -0.337 3.615 -0.224 H28 VYH 69 VYH H30 H30 H 0 1 N N N N N N -30.864 -0.951 15.428 0.440 5.170 1.544 H30 VYH 70 VYH H29 H31 H 0 1 N N N N N N -31.502 0.547 14.670 2.101 4.561 1.350 H29 VYH 71 VYH H31 H32 H 0 1 N N N N N N -30.470 1.865 16.506 2.097 5.306 -1.015 H31 VYH 72 VYH H32 H33 H 0 1 N N N N N N -29.758 0.348 17.153 0.436 5.915 -0.821 H32 VYH 73 VYH H35 H34 H 0 1 N N N N N N -32.266 -6.984 11.001 -6.082 0.515 -1.798 H35 VYH 74 VYH H33 H36 H 0 1 N N N N N N -28.229 1.534 15.755 2.065 7.660 -0.519 H33 VYH 75 VYH H34 H37 H 0 1 N N N N N N -28.606 0.099 15.073 1.292 7.374 0.925 H34 VYH 76 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal VYH C C1 SING N N 1 VYH C1 C2 DOUB Y N 2 VYH C2 C3 SING Y N 3 VYH C3 C4 DOUB Y N 4 VYH C4 C5 SING Y N 5 VYH C5 C6 SING N N 6 VYH C6 C7 DOUB Y N 7 VYH C7 C8 SING Y N 8 VYH C8 C9 DOUB Y N 9 VYH C10 C9 SING N N 10 VYH C10 C11 DOUB N N 11 VYH C11 C12 SING N N 12 VYH C12 C13 DOUB Y N 13 VYH C13 N SING Y N 14 VYH N C14 DOUB Y N 15 VYH N1 C14 SING N N 16 VYH C15 N1 SING N N 17 VYH C16 C15 SING N N 18 VYH C17 C16 SING N N 19 VYH N2 C17 SING N N 20 VYH N2 C18 SING N N 21 VYH C18 C19 SING N N 22 VYH C19 O SING N N 23 VYH O C20 SING N N 24 VYH C20 C21 SING N N 25 VYH C21 N2 SING N N 26 VYH C14 N3 SING Y N 27 VYH N3 C22 DOUB Y N 28 VYH C12 C22 SING Y N 29 VYH C22 N4 SING N N 30 VYH C23 N4 SING N N 31 VYH C24 C23 SING N N 32 VYH C25 C24 SING N N 33 VYH C26 C25 SING N N 34 VYH N5 C26 SING N N 35 VYH N4 C27 SING N N 36 VYH C27 C10 SING N N 37 VYH O1 C27 DOUB N N 38 VYH C9 C28 SING Y N 39 VYH C28 CL SING N N 40 VYH C29 C28 DOUB Y N 41 VYH C6 C29 SING Y N 42 VYH N6 C5 DOUB Y N 43 VYH C1 N6 SING Y N 44 VYH N1 H10 SING N N 45 VYH C4 H5 SING N N 46 VYH C7 H6 SING N N 47 VYH C8 H7 SING N N 48 VYH C13 H9 SING N N 49 VYH C15 H12 SING N N 50 VYH C15 H11 SING N N 51 VYH C17 H16 SING N N 52 VYH C17 H15 SING N N 53 VYH C11 H8 SING N N 54 VYH C18 H18 SING N N 55 VYH C18 H17 SING N N 56 VYH C2 H3 SING N N 57 VYH C16 H13 SING N N 58 VYH C16 H14 SING N N 59 VYH C H1 SING N N 60 VYH C H SING N N 61 VYH C H2 SING N N 62 VYH C3 H4 SING N N 63 VYH C19 H20 SING N N 64 VYH C19 H19 SING N N 65 VYH C20 H22 SING N N 66 VYH C20 H21 SING N N 67 VYH C21 H24 SING N N 68 VYH C21 H23 SING N N 69 VYH C23 H26 SING N N 70 VYH C23 H25 SING N N 71 VYH C24 H27 SING N N 72 VYH C24 H28 SING N N 73 VYH C25 H30 SING N N 74 VYH C25 H29 SING N N 75 VYH C26 H31 SING N N 76 VYH C26 H32 SING N N 77 VYH C29 H35 SING N N 78 VYH N5 H33 SING N N 79 VYH N5 H34 SING N N 80 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor VYH InChI InChI 1.06 "InChI=1S/C30H36ClN7O2/c1-21-6-4-7-27(35-21)22-8-9-24(26(31)19-22)25-18-23-20-34-30(33-11-5-12-37-14-16-40-17-15-37)36-28(23)38(29(25)39)13-3-2-10-32/h4,6-9,18-20H,2-3,5,10-17,32H2,1H3,(H,33,34,36)" VYH InChIKey InChI 1.06 LPNYPGSVVFRVQQ-UHFFFAOYSA-N VYH SMILES_CANONICAL CACTVS 3.385 "Cc1cccc(n1)c2ccc(c(Cl)c2)C3=Cc4cnc(NCCCN5CCOCC5)nc4N(CCCCN)C3=O" VYH SMILES CACTVS 3.385 "Cc1cccc(n1)c2ccc(c(Cl)c2)C3=Cc4cnc(NCCCN5CCOCC5)nc4N(CCCCN)C3=O" VYH SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "Cc1cccc(n1)c2ccc(c(c2)Cl)C3=Cc4cnc(nc4N(C3=O)CCCCN)NCCCN5CCOCC5" VYH SMILES "OpenEye OEToolkits" 2.0.7 "Cc1cccc(n1)c2ccc(c(c2)Cl)C3=Cc4cnc(nc4N(C3=O)CCCCN)NCCCN5CCOCC5" # _pdbx_chem_comp_identifier.comp_id VYH _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "8-(4-azanylbutyl)-6-[2-chloranyl-4-(6-methylpyridin-2-yl)phenyl]-2-(3-morpholin-4-ylpropylamino)pyrido[2,3-d]pyrimidin-7-one" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site VYH "Create component" 2023-09-20 PDBE VYH "Initial release" 2023-11-08 RCSB #