data_VYN # _chem_comp.id VYN _chem_comp.name "8-(4-azanylbutyl)-2-[1,3-bis(oxidanyl)propan-2-ylamino]-6-[2-chloranyl-4-(6-methylpyridin-2-yl)phenyl]pyrido[2,3-d]pyrimidin-7-one" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C26 H29 Cl N6 O3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-09-20 _chem_comp.pdbx_modified_date 2023-11-03 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 509.000 _chem_comp.one_letter_code ? _chem_comp.three_letter_code VYN _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8QLR _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal VYN N1 N1 N 0 1 N N N N N N 42.400 14.326 42.709 5.511 -1.212 -0.338 N1 VYN 1 VYN C2 C1 C 0 1 Y N N N N N 37.376 19.822 55.441 -9.066 -0.386 0.976 C2 VYN 2 VYN N3 N2 N 0 1 N N N N N N 42.428 15.801 47.093 1.361 0.933 -0.551 N3 VYN 3 VYN C4 C2 C 0 1 Y N N N N N 36.877 19.264 53.177 -6.906 -0.332 1.979 C4 VYN 4 VYN C5 C3 C 0 1 Y N N N N N 38.184 18.812 53.043 -6.357 -0.357 0.698 C5 VYN 5 VYN C6 C4 C 0 1 Y N N N N N 38.696 18.271 51.758 -4.884 -0.343 0.530 C6 VYN 6 VYN C8 C5 C 0 1 Y N N N N N 40.067 18.498 49.781 -2.686 -0.284 1.494 C8 VYN 7 VYN C24 C6 C 0 1 Y N N N N N 38.905 16.452 50.195 -2.960 -0.354 -0.908 C24 VYN 8 VYN CL CL1 CL 0 0 N N N N N N 38.453 14.837 49.747 -2.269 -0.385 -2.500 CL VYN 9 VYN C25 C7 C 0 1 Y N N N N N 38.378 16.973 51.361 -4.329 -0.368 -0.750 C25 VYN 10 VYN C3 C8 C 0 1 Y N N N N N 36.477 19.783 54.394 -8.282 -0.346 2.121 C3 VYN 11 VYN N5 N3 N 0 1 Y N N N N N 39.072 18.840 54.060 -7.142 -0.400 -0.371 N5 VYN 12 VYN C1 C9 C 0 1 Y N N N N N 38.665 19.332 55.248 -8.455 -0.414 -0.264 C1 VYN 13 VYN C C10 C 0 1 N N N N N N 39.663 19.291 56.368 -9.302 -0.462 -1.509 C VYN 14 VYN C9 C11 C 0 1 Y N N N N N 39.766 17.191 49.391 -2.129 -0.315 0.215 C9 VYN 15 VYN C7 C12 C 0 1 Y N N N N N 39.539 19.022 50.947 -4.054 -0.298 1.650 C7 VYN 16 VYN C10 C13 C 0 1 N N N N N N 40.412 16.632 48.175 -0.658 -0.300 0.047 C10 VYN 17 VYN C23 C14 C 0 1 N N N N N N 41.828 16.277 48.251 0.023 0.919 -0.398 C23 VYN 18 VYN O2 O1 O 0 1 N N N N N N 42.494 16.363 49.269 -0.625 1.924 -0.631 O2 VYN 19 VYN C19 C15 C 0 1 N N N N N N 43.868 15.541 47.158 2.026 2.159 -0.997 C19 VYN 20 VYN C20 C16 C 0 1 N N N N N N 44.706 16.666 46.554 2.411 3.003 0.220 C20 VYN 21 VYN C21 C17 C 0 1 N N N N N N 44.740 17.917 47.446 3.106 4.283 -0.245 C21 VYN 22 VYN C22 C18 C 0 1 N N N N N N 45.606 19.022 46.865 3.490 5.127 0.972 C22 VYN 23 VYN N4 N4 N 0 1 N N N N N N 45.518 20.279 47.639 4.158 6.357 0.525 N4 VYN 24 VYN C18 C19 C 0 1 Y N N N N N 41.744 15.619 45.904 2.107 -0.188 -0.289 C18 VYN 25 VYN C12 C20 C 0 1 Y N N N N N 40.375 15.941 45.834 1.482 -1.378 0.142 C12 VYN 26 VYN C11 C21 C 0 1 N N N N N N 39.742 16.469 47.011 0.079 -1.425 0.306 C11 VYN 27 VYN N2 N5 N 0 1 Y N N N N N 42.433 15.128 44.867 3.428 -0.177 -0.433 N2 VYN 28 VYN C14 C22 C 0 1 Y N N N N N 41.737 14.929 43.740 4.141 -1.263 -0.176 C14 VYN 29 VYN N N6 N 0 1 Y N N N N N 40.433 15.181 43.551 3.587 -2.399 0.231 N VYN 30 VYN C13 C23 C 0 1 Y N N N N N 39.769 15.688 44.599 2.282 -2.501 0.401 C13 VYN 31 VYN C15 C24 C 0 1 N N N N N N 43.604 14.841 42.067 6.326 -2.399 -0.067 C15 VYN 32 VYN C17 C25 C 0 1 N N N N N N 44.016 13.850 40.988 7.626 -2.319 -0.870 C17 VYN 33 VYN O1 O2 O 0 1 N N N N N N 44.187 12.564 41.567 8.404 -1.214 -0.408 O1 VYN 34 VYN C16 C26 C 0 1 N N N N N N 44.765 14.871 43.044 6.652 -2.464 1.426 C16 VYN 35 VYN O O3 O 0 1 N N N N N N 45.838 15.623 42.504 7.475 -1.352 1.783 O VYN 36 VYN H1 H1 H 0 1 N N N N N N 41.726 14.237 41.976 5.934 -0.391 -0.635 H1 VYN 37 VYN H2 H2 H 0 1 N N N N N N 37.083 20.228 56.398 -10.143 -0.398 1.054 H2 VYN 38 VYN H3 H3 H 0 1 N N N N N N 36.188 19.211 52.347 -6.266 -0.302 2.849 H3 VYN 39 VYN H4 H4 H 0 1 N N N N N N 40.717 19.104 49.167 -2.044 -0.250 2.362 H4 VYN 40 VYN H5 H5 H 0 1 N N N N N N 37.717 16.372 51.968 -4.972 -0.399 -1.617 H5 VYN 41 VYN H6 H6 H 0 1 N N N N N N 35.471 20.154 54.525 -8.737 -0.327 3.101 H6 VYN 42 VYN H7 H7 H 0 1 N N N N N N 40.601 18.844 56.008 -9.492 -1.501 -1.779 H7 VYN 43 VYN H8 H8 H 0 1 N N N N N N 39.857 20.314 56.724 -10.248 0.045 -1.324 H8 VYN 44 VYN H9 H9 H 0 1 N N N N N N 39.262 18.685 57.194 -8.776 0.034 -2.325 H9 VYN 45 VYN H10 H10 H 0 1 N N N N N N 39.786 20.034 51.233 -4.485 -0.274 2.640 H10 VYN 46 VYN H11 H11 H 0 1 N N N N N N 44.081 14.612 46.609 2.924 1.902 -1.559 H11 VYN 47 VYN H12 H12 H 0 1 N N N N N N 44.155 15.418 48.213 1.350 2.729 -1.635 H12 VYN 48 VYN H13 H13 H 0 1 N N N N N N 45.735 16.304 46.415 1.513 3.260 0.782 H13 VYN 49 VYN H14 H14 H 0 1 N N N N N N 44.278 16.940 45.578 3.087 2.433 0.858 H14 VYN 50 VYN H15 H15 H 0 1 N N N N N N 43.714 18.296 47.561 4.004 4.026 -0.807 H15 VYN 51 VYN H16 H16 H 0 1 N N N N N N 45.140 17.637 48.432 2.430 4.853 -0.883 H16 VYN 52 VYN H17 H17 H 0 1 N N N N N N 46.653 18.684 46.860 2.592 5.384 1.534 H17 VYN 53 VYN H18 H18 H 0 1 N N N N N N 45.280 19.220 45.833 4.166 4.557 1.610 H18 VYN 54 VYN H19 H19 H 0 1 N N N N N N 46.103 20.972 47.218 3.575 6.870 -0.119 H19 VYN 55 VYN H20 H20 H 0 1 N N N N N N 44.571 20.601 47.645 4.421 6.931 1.312 H20 VYN 56 VYN H22 H22 H 0 1 N N N N N N 38.699 16.744 46.965 -0.405 -2.333 0.636 H22 VYN 57 VYN H23 H23 H 0 1 N N N N N N 38.719 15.911 44.485 1.840 -3.429 0.732 H23 VYN 58 VYN H24 H24 H 0 1 N N N N N N 43.436 15.838 41.633 5.773 -3.292 -0.358 H24 VYN 59 VYN H25 H25 H 0 1 N N N N N N 44.963 14.176 40.533 8.191 -3.242 -0.738 H25 VYN 60 VYN H26 H26 H 0 1 N N N N N N 43.235 13.803 40.215 7.393 -2.184 -1.926 H26 VYN 61 VYN H27 H27 H 0 1 N N N N N N 44.444 11.945 40.894 9.244 -1.102 -0.873 H27 VYN 62 VYN H28 H28 H 0 1 N N N N N N 44.435 15.333 43.986 5.727 -2.431 2.002 H28 VYN 63 VYN H29 H29 H 0 1 N N N N N N 45.103 13.843 43.238 7.181 -3.392 1.642 H29 VYN 64 VYN H30 H30 H 0 1 N N N N N N 46.559 15.636 43.122 7.721 -1.329 2.718 H30 VYN 65 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal VYN C17 O1 SING N N 1 VYN C17 C15 SING N N 2 VYN C15 N1 SING N N 3 VYN C15 C16 SING N N 4 VYN O C16 SING N N 5 VYN N1 C14 SING N N 6 VYN N C14 DOUB Y N 7 VYN N C13 SING Y N 8 VYN C14 N2 SING Y N 9 VYN C13 C12 DOUB Y N 10 VYN N2 C18 DOUB Y N 11 VYN C12 C18 SING Y N 12 VYN C12 C11 SING N N 13 VYN C18 N3 SING N N 14 VYN C20 C19 SING N N 15 VYN C20 C21 SING N N 16 VYN C22 C21 SING N N 17 VYN C22 N4 SING N N 18 VYN C11 C10 DOUB N N 19 VYN N3 C19 SING N N 20 VYN N3 C23 SING N N 21 VYN C10 C23 SING N N 22 VYN C10 C9 SING N N 23 VYN C23 O2 DOUB N N 24 VYN C9 C8 DOUB Y N 25 VYN C9 C24 SING Y N 26 VYN CL C24 SING N N 27 VYN C8 C7 SING Y N 28 VYN C24 C25 DOUB Y N 29 VYN C7 C6 DOUB Y N 30 VYN C25 C6 SING Y N 31 VYN C6 C5 SING N N 32 VYN C5 C4 DOUB Y N 33 VYN C5 N5 SING Y N 34 VYN C4 C3 SING Y N 35 VYN N5 C1 DOUB Y N 36 VYN C3 C2 DOUB Y N 37 VYN C1 C2 SING Y N 38 VYN C1 C SING N N 39 VYN N1 H1 SING N N 40 VYN C2 H2 SING N N 41 VYN C4 H3 SING N N 42 VYN C8 H4 SING N N 43 VYN C25 H5 SING N N 44 VYN C3 H6 SING N N 45 VYN C H7 SING N N 46 VYN C H8 SING N N 47 VYN C H9 SING N N 48 VYN C7 H10 SING N N 49 VYN C19 H11 SING N N 50 VYN C19 H12 SING N N 51 VYN C20 H13 SING N N 52 VYN C20 H14 SING N N 53 VYN C21 H15 SING N N 54 VYN C21 H16 SING N N 55 VYN C22 H17 SING N N 56 VYN C22 H18 SING N N 57 VYN N4 H19 SING N N 58 VYN N4 H20 SING N N 59 VYN C11 H22 SING N N 60 VYN C13 H23 SING N N 61 VYN C15 H24 SING N N 62 VYN C17 H25 SING N N 63 VYN C17 H26 SING N N 64 VYN O1 H27 SING N N 65 VYN C16 H28 SING N N 66 VYN C16 H29 SING N N 67 VYN O H30 SING N N 68 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor VYN InChI InChI 1.06 "InChI=1S/C26H29ClN6O3/c1-16-5-4-6-23(30-16)17-7-8-20(22(27)12-17)21-11-18-13-29-26(31-19(14-34)15-35)32-24(18)33(25(21)36)10-3-2-9-28/h4-8,11-13,19,34-35H,2-3,9-10,14-15,28H2,1H3,(H,29,31,32)" VYN InChIKey InChI 1.06 PIJSEUOSRTYUJM-UHFFFAOYSA-N VYN SMILES_CANONICAL CACTVS 3.385 "Cc1cccc(n1)c2ccc(c(Cl)c2)C3=Cc4cnc(NC(CO)CO)nc4N(CCCCN)C3=O" VYN SMILES CACTVS 3.385 "Cc1cccc(n1)c2ccc(c(Cl)c2)C3=Cc4cnc(NC(CO)CO)nc4N(CCCCN)C3=O" VYN SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "Cc1cccc(n1)c2ccc(c(c2)Cl)C3=Cc4cnc(nc4N(C3=O)CCCCN)NC(CO)CO" VYN SMILES "OpenEye OEToolkits" 2.0.7 "Cc1cccc(n1)c2ccc(c(c2)Cl)C3=Cc4cnc(nc4N(C3=O)CCCCN)NC(CO)CO" # _pdbx_chem_comp_identifier.comp_id VYN _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "8-(4-azanylbutyl)-2-[1,3-bis(oxidanyl)propan-2-ylamino]-6-[2-chloranyl-4-(6-methylpyridin-2-yl)phenyl]pyrido[2,3-d]pyrimidin-7-one" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site VYN "Create component" 2023-09-20 PDBE VYN "Initial release" 2023-11-08 RCSB #