data_VYP # _chem_comp.id VYP _chem_comp.name "2-(morpholin-4-yl)[4,5'-bipyrimidin]-2'-amine" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C12 H14 N6 O" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2020-09-22 _chem_comp.pdbx_modified_date 2021-01-01 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 258.279 _chem_comp.one_letter_code ? _chem_comp.three_letter_code VYP _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7K71 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal VYP C9 C1 C 0 1 Y N N -18.787 10.274 27.108 0.665 2.240 0.210 C9 VYP 1 VYP C10 C2 C 0 1 Y N N -19.345 11.204 27.992 -0.616 2.761 0.216 C10 VYP 2 VYP C4 C3 C 0 1 Y N N -17.267 8.253 25.567 2.343 -1.112 -0.230 C4 VYP 3 VYP C6 C4 C 0 1 Y N N -15.427 9.769 25.455 3.317 1.044 0.180 C6 VYP 4 VYP C5 C5 C 0 1 Y N N -16.720 9.489 25.936 2.176 0.260 -0.018 C5 VYP 5 VYP C8 C6 C 0 1 Y N N -17.427 10.419 26.804 0.824 0.867 -0.003 C8 VYP 6 VYP C12 C7 C 0 1 Y N N -17.331 12.324 28.134 -1.466 0.653 -0.167 C12 VYP 7 VYP C2 C8 C 0 1 Y N N -15.340 7.709 24.413 4.621 -0.840 -0.035 C2 VYP 8 VYP C15 C9 C 0 1 N N N -17.040 14.196 29.738 -2.601 -1.250 0.624 C15 VYP 9 VYP C19 C10 C 0 1 N N N -15.165 13.540 28.268 -3.814 0.623 -0.312 C19 VYP 10 VYP C16 C11 C 0 1 N N N -16.547 15.651 29.602 -3.801 -2.157 0.337 C16 VYP 11 VYP C18 C12 C 0 1 N N N -14.795 15.032 28.196 -5.004 -0.303 -0.589 C18 VYP 12 VYP N11 N1 N 0 1 Y N N -18.664 12.229 28.534 -1.646 1.951 0.027 N11 VYP 13 VYP N3 N2 N 0 1 Y N N -16.623 7.343 24.818 3.564 -1.616 -0.231 N3 VYP 14 VYP N7 N3 N 0 1 Y N N -14.711 8.919 24.702 4.504 0.466 0.159 N7 VYP 15 VYP N13 N4 N 0 1 Y N N -16.673 11.428 27.314 -0.257 0.114 -0.191 N13 VYP 16 VYP N14 N5 N 0 1 N N N -16.616 13.456 28.532 -2.570 -0.159 -0.361 N14 VYP 17 VYP N1 N6 N 0 1 N N N -14.635 6.802 23.669 5.881 -1.406 -0.050 N1 VYP 18 VYP O17 O1 O 0 1 N N N -15.164 15.690 29.377 -4.999 -1.375 0.359 O17 VYP 19 VYP H24 H1 H 0 1 N N N -19.379 9.479 26.679 1.523 2.878 0.362 H24 VYP 20 VYP H25 H2 H 0 1 N N N -20.386 11.092 28.255 -0.774 3.818 0.374 H25 VYP 21 VYP H22 H3 H 0 1 N N N -18.266 8.018 25.905 1.487 -1.750 -0.386 H22 VYP 22 VYP H23 H4 H 0 1 N N N -14.986 10.722 25.706 3.228 2.108 0.346 H23 VYP 23 VYP H26 H5 H 0 1 N N N -18.137 14.180 29.820 -2.692 -0.833 1.627 H26 VYP 24 VYP H27 H6 H 0 1 N N N -16.599 13.734 30.634 -1.682 -1.831 0.553 H27 VYP 25 VYP H33 H7 H 0 1 N N N -14.928 13.047 27.314 -3.780 1.408 -1.066 H33 VYP 26 VYP H32 H8 H 0 1 N N N -14.606 13.053 29.081 -3.924 1.071 0.676 H32 VYP 27 VYP H28 H9 H 0 1 N N N -16.777 16.198 30.528 -3.684 -2.616 -0.644 H28 VYP 28 VYP H29 H10 H 0 1 N N N -17.063 16.129 28.756 -3.860 -2.934 1.099 H29 VYP 29 VYP H31 H11 H 0 1 N N N -13.709 15.128 28.053 -5.933 0.260 -0.497 H31 VYP 30 VYP H30 H12 H 0 1 N N N -15.319 15.494 27.346 -4.922 -0.710 -1.597 H30 VYP 31 VYP H21 H13 H 0 1 N N N -13.737 7.180 23.445 6.665 -0.849 0.080 H21 VYP 32 VYP H20 H14 H 0 1 N N N -14.520 5.958 24.194 5.983 -2.361 -0.190 H20 VYP 33 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal VYP N1 C2 SING N N 1 VYP C2 N7 DOUB Y N 2 VYP C2 N3 SING Y N 3 VYP N7 C6 SING Y N 4 VYP N3 C4 DOUB Y N 5 VYP C6 C5 DOUB Y N 6 VYP C4 C5 SING Y N 7 VYP C5 C8 SING N N 8 VYP C8 C9 DOUB Y N 9 VYP C8 N13 SING Y N 10 VYP C9 C10 SING Y N 11 VYP N13 C12 DOUB Y N 12 VYP C10 N11 DOUB Y N 13 VYP C12 N14 SING N N 14 VYP C12 N11 SING Y N 15 VYP C18 C19 SING N N 16 VYP C18 O17 SING N N 17 VYP C19 N14 SING N N 18 VYP N14 C15 SING N N 19 VYP O17 C16 SING N N 20 VYP C16 C15 SING N N 21 VYP C9 H24 SING N N 22 VYP C10 H25 SING N N 23 VYP C4 H22 SING N N 24 VYP C6 H23 SING N N 25 VYP C15 H26 SING N N 26 VYP C15 H27 SING N N 27 VYP C19 H33 SING N N 28 VYP C19 H32 SING N N 29 VYP C16 H28 SING N N 30 VYP C16 H29 SING N N 31 VYP C18 H31 SING N N 32 VYP C18 H30 SING N N 33 VYP N1 H21 SING N N 34 VYP N1 H20 SING N N 35 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor VYP SMILES ACDLabs 12.01 "c2cnc(N1CCOCC1)nc2c3cnc(nc3)N" VYP InChI InChI 1.03 "InChI=1S/C12H14N6O/c13-11-15-7-9(8-16-11)10-1-2-14-12(17-10)18-3-5-19-6-4-18/h1-2,7-8H,3-6H2,(H2,13,15,16)" VYP InChIKey InChI 1.03 WCSNDONKXWSCEI-UHFFFAOYSA-N VYP SMILES_CANONICAL CACTVS 3.385 "Nc1ncc(cn1)c2ccnc(n2)N3CCOCC3" VYP SMILES CACTVS 3.385 "Nc1ncc(cn1)c2ccnc(n2)N3CCOCC3" VYP SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1cnc(nc1c2cnc(nc2)N)N3CCOCC3" VYP SMILES "OpenEye OEToolkits" 2.0.7 "c1cnc(nc1c2cnc(nc2)N)N3CCOCC3" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier VYP "SYSTEMATIC NAME" ACDLabs 12.01 "2-(morpholin-4-yl)[4,5'-bipyrimidin]-2'-amine" VYP "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "5-(2-morpholin-4-ylpyrimidin-4-yl)pyrimidin-2-amine" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site VYP "Create component" 2020-09-22 RCSB VYP "Initial release" 2021-01-06 RCSB ##