data_VZ2 # _chem_comp.id VZ2 _chem_comp.name "8-(4-azanylbutyl)-6-[2-chloranyl-4-(6-methylpyridin-2-yl)phenyl]-2-[3-(2-oxidanylidenepyrrolidin-1-yl)propylamino]pyrido[2,3-d]pyrimidin-7-one" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C30 H34 Cl N7 O2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-09-20 _chem_comp.pdbx_modified_date 2023-11-03 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 560.090 _chem_comp.one_letter_code ? _chem_comp.three_letter_code VZ2 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8QLT _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal VZ2 C C1 C 0 1 N N N N N N -6.696 -3.128 4.812 10.153 2.913 1.656 C VZ2 1 VZ2 O O1 O 0 1 N N N N N N -17.594 2.796 15.979 -9.358 2.391 1.639 O VZ2 2 VZ2 N N1 N 0 1 Y N N N N N -13.709 -3.102 16.359 -2.528 1.724 -0.517 N VZ2 3 VZ2 C3 C2 C 0 1 Y N N N N N -6.584 -6.338 6.809 9.699 0.454 -1.168 C3 VZ2 4 VZ2 C4 C3 C 0 1 Y N N N N N -7.410 -5.983 7.860 8.329 0.269 -1.102 C4 VZ2 5 VZ2 C5 C4 C 0 1 Y N N N N N -7.957 -4.705 7.874 7.598 0.961 -0.137 C5 VZ2 6 VZ2 C6 C5 C 0 1 Y N N N N N -8.825 -4.239 8.979 6.130 0.774 -0.053 C6 VZ2 7 VZ2 C7 C6 C 0 1 Y N N N N N -8.339 -3.387 9.963 5.394 1.464 0.910 C7 VZ2 8 VZ2 C8 C7 C 0 1 Y N N N N N -9.145 -2.954 10.999 4.030 1.291 0.989 C8 VZ2 9 VZ2 C1 C8 C 0 1 Y N N N N N -6.921 -4.159 5.879 9.510 1.971 0.672 C1 VZ2 10 VZ2 C10 C9 C 0 1 N N N N N N -11.349 -2.808 12.146 1.917 0.239 0.190 C10 VZ2 11 VZ2 C11 C10 C 0 1 N N N N N N -11.722 -3.547 13.217 1.069 1.212 -0.270 C11 VZ2 12 VZ2 C12 C11 C 0 1 Y N N N N N -12.527 -3.015 14.265 -0.326 1.005 -0.175 C12 VZ2 13 VZ2 C13 C12 C 0 1 Y N N N N N -12.953 -3.682 15.419 -1.236 1.970 -0.631 C13 VZ2 14 VZ2 C14 C13 C 0 1 Y N N N N N -14.046 -1.819 16.142 -2.967 0.589 0.016 C14 VZ2 15 VZ2 C15 C14 C 0 1 N N N N N N -15.377 0.106 16.935 -5.260 1.405 -0.371 C15 VZ2 16 VZ2 C16 C15 C 0 1 N N N N N N -15.030 0.981 18.122 -6.698 0.930 -0.150 C16 VZ2 17 VZ2 C17 C16 C 0 1 N N N N N N -15.706 2.335 18.059 -7.671 1.998 -0.654 C17 VZ2 18 VZ2 C18 C17 C 0 1 N N N N N N -17.861 1.846 19.361 -9.824 0.771 -1.419 C18 VZ2 19 VZ2 C19 C18 C 0 1 N N N N N N -19.319 2.129 19.048 -11.297 0.902 -0.971 C19 VZ2 20 VZ2 C2 C19 C 0 1 Y N N N N N -6.335 -5.422 5.806 10.295 1.321 -0.262 C2 VZ2 21 VZ2 C20 C20 C 0 1 N N N N N N -19.394 2.225 17.529 -11.142 1.176 0.543 C20 VZ2 22 VZ2 C21 C21 C 0 1 N N N N N N -17.976 2.462 17.090 -9.761 1.781 0.672 C21 VZ2 23 VZ2 C22 C22 C 0 1 Y N N N N N -12.948 -1.671 14.160 -0.831 -0.188 0.386 C22 VZ2 24 VZ2 C23 C23 C 0 1 N N N N N N -12.930 0.504 12.987 -0.515 -2.389 1.421 C23 VZ2 25 VZ2 C24 C24 C 0 1 N N N N N N -12.060 1.402 13.868 -0.703 -3.432 0.318 C24 VZ2 26 VZ2 C25 C25 C 0 1 N N N N N N -10.619 1.493 13.377 -1.268 -4.719 0.923 C25 VZ2 27 VZ2 C26 C26 C 0 1 N N N N N N -9.720 2.282 14.317 -1.456 -5.762 -0.181 C26 VZ2 28 VZ2 C27 C27 C 0 1 N N N N N N -11.804 -1.425 12.021 1.360 -0.988 0.764 C27 VZ2 29 VZ2 C28 C28 C 0 1 Y N N N N N -10.956 -4.210 10.084 4.120 -0.261 -0.864 C28 VZ2 30 VZ2 C29 C29 C 0 1 Y N N N N N -10.152 -4.648 9.054 5.485 -0.087 -0.941 C29 VZ2 31 VZ2 C9 C30 C 0 1 Y N N N N N -10.479 -3.354 11.072 3.384 0.426 0.105 C9 VZ2 32 VZ2 N1 N2 N 0 1 N N N N N N -14.818 -1.229 17.075 -4.329 0.383 0.112 N1 VZ2 33 VZ2 N2 N3 N 0 1 N N N N N N -17.165 2.230 18.131 -9.047 1.544 -0.442 N2 VZ2 34 VZ2 N3 N4 N 0 1 Y N N N N N -13.705 -1.066 15.082 -2.147 -0.351 0.460 N3 VZ2 35 VZ2 N4 N5 N 0 1 N N N N N N -12.552 -0.915 13.068 0.026 -1.157 0.842 N4 VZ2 36 VZ2 N5 N6 N 0 1 N N N N N N -8.355 2.460 13.767 -1.999 -6.997 0.400 N5 VZ2 37 VZ2 N6 N7 N 0 1 Y N N N N N -7.722 -3.803 6.902 8.206 1.785 0.707 N6 VZ2 38 VZ2 O1 O2 O 0 1 N N N N N N -11.544 -0.712 11.060 2.107 -1.858 1.176 O1 VZ2 39 VZ2 CL CL1 CL 0 0 N N N N N N -12.587 -4.782 10.119 3.317 -1.331 -1.969 CL VZ2 40 VZ2 H H1 H 0 1 N N N N N N -7.253 -2.213 5.062 10.172 3.919 1.238 H VZ2 41 VZ2 H1 H2 H 0 1 N N N N N N -5.622 -2.898 4.746 9.580 2.916 2.584 H1 VZ2 42 VZ2 H2 H3 H 0 1 N N N N N N -7.048 -3.518 3.845 11.173 2.585 1.860 H2 VZ2 43 VZ2 H4 H4 H 0 1 N N N N N N -6.138 -7.321 6.773 10.292 -0.069 -1.904 H4 VZ2 44 VZ2 H5 H5 H 0 1 N N N N N N -7.625 -6.684 8.653 7.833 -0.402 -1.788 H5 VZ2 45 VZ2 H6 H6 H 0 1 N N N N N N -7.312 -3.057 9.918 5.893 2.133 1.594 H6 VZ2 46 VZ2 H7 H7 H 0 1 N N N N N N -8.739 -2.301 11.757 3.460 1.825 1.735 H7 VZ2 47 VZ2 H8 H8 H 0 1 N N N N N N -11.398 -4.575 13.279 1.461 2.123 -0.697 H8 VZ2 48 VZ2 H9 H9 H 0 1 N N N N N N -12.658 -4.712 15.558 -0.888 2.895 -1.066 H9 VZ2 49 VZ2 H12 H10 H 0 1 N N N N N N -14.975 0.568 16.021 -5.094 1.575 -1.435 H12 VZ2 50 VZ2 H11 H11 H 0 1 N N N N N N -16.471 0.029 16.856 -5.096 2.333 0.176 H11 VZ2 51 VZ2 H13 H12 H 0 1 N N N N N N -15.348 0.470 19.043 -6.862 0.002 -0.697 H13 VZ2 52 VZ2 H14 H13 H 0 1 N N N N N N -13.940 1.131 18.144 -6.865 0.760 0.914 H14 VZ2 53 VZ2 H15 H14 H 0 1 N N N N N N -15.353 2.947 18.902 -7.507 2.927 -0.108 H15 VZ2 54 VZ2 H16 H15 H 0 1 N N N N N N -15.433 2.824 17.112 -7.504 2.168 -1.718 H16 VZ2 55 VZ2 H18 H16 H 0 1 N N N N N N -17.707 0.780 19.583 -9.516 -0.275 -1.403 H18 VZ2 56 VZ2 H17 H17 H 0 1 N N N N N N -17.517 2.452 20.212 -9.696 1.187 -2.419 H17 VZ2 57 VZ2 H19 H18 H 0 1 N N N N N N -19.957 1.311 19.414 -11.784 1.738 -1.472 H19 VZ2 58 VZ2 H20 H19 H 0 1 N N N N N N -19.635 3.076 19.510 -11.841 -0.026 -1.146 H20 VZ2 59 VZ2 H3 H20 H 0 1 N N N N N N -5.695 -5.681 4.976 11.363 1.480 -0.282 H3 VZ2 60 VZ2 H22 H21 H 0 1 N N N N N N -19.781 1.289 17.100 -11.901 1.882 0.882 H22 VZ2 61 VZ2 H21 H22 H 0 1 N N N N N N -20.039 3.062 17.225 -11.205 0.246 1.107 H21 VZ2 62 VZ2 H24 H23 H 0 1 N N N N N N -12.831 0.835 11.943 -1.477 -2.178 1.890 H24 VZ2 63 VZ2 H23 H24 H 0 1 N N N N N N -13.977 0.607 13.307 0.177 -2.773 2.171 H23 VZ2 64 VZ2 H26 H25 H 0 1 N N N N N N -12.493 2.413 13.876 -1.395 -3.048 -0.431 H26 VZ2 65 VZ2 H25 H26 H 0 1 N N N N N N -12.058 0.996 14.890 0.259 -3.643 -0.150 H25 VZ2 66 VZ2 H27 H27 H 0 1 N N N N N N -10.217 0.474 13.280 -0.576 -5.103 1.672 H27 VZ2 67 VZ2 H28 H28 H 0 1 N N N N N N -10.614 1.984 12.393 -2.230 -4.508 1.391 H28 VZ2 68 VZ2 H30 H29 H 0 1 N N N N N N -10.166 3.273 14.485 -2.148 -5.377 -0.930 H30 VZ2 69 VZ2 H29 H30 H 0 1 N N N N N N -9.649 1.744 15.274 -0.494 -5.972 -0.649 H29 VZ2 70 VZ2 H33 H31 H 0 1 N N N N N N -10.554 -5.311 8.302 6.055 -0.617 -1.690 H33 VZ2 71 VZ2 H10 H32 H 0 1 N N N N N N -15.600 -1.839 17.207 -4.669 -0.440 0.498 H10 VZ2 72 VZ2 H32 H33 H 0 1 N N N N N N -7.800 2.982 14.414 -2.859 -6.816 0.896 H32 VZ2 73 VZ2 H34 H34 H 0 1 N N N N N N -7.937 1.564 13.616 -2.132 -7.702 -0.310 H34 VZ2 74 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal VZ2 C C1 SING N N 1 VZ2 C1 C2 DOUB Y N 2 VZ2 C2 C3 SING Y N 3 VZ2 C3 C4 DOUB Y N 4 VZ2 C4 C5 SING Y N 5 VZ2 C5 C6 SING N N 6 VZ2 C6 C7 DOUB Y N 7 VZ2 C7 C8 SING Y N 8 VZ2 C8 C9 DOUB Y N 9 VZ2 C10 C9 SING N N 10 VZ2 C10 C11 DOUB N N 11 VZ2 C11 C12 SING N N 12 VZ2 C12 C13 DOUB Y N 13 VZ2 C13 N SING Y N 14 VZ2 N C14 DOUB Y N 15 VZ2 N1 C14 SING N N 16 VZ2 C15 N1 SING N N 17 VZ2 C16 C15 SING N N 18 VZ2 C17 C16 SING N N 19 VZ2 N2 C17 SING N N 20 VZ2 N2 C18 SING N N 21 VZ2 C18 C19 SING N N 22 VZ2 C19 C20 SING N N 23 VZ2 C20 C21 SING N N 24 VZ2 C21 N2 SING N N 25 VZ2 O C21 DOUB N N 26 VZ2 C14 N3 SING Y N 27 VZ2 N3 C22 DOUB Y N 28 VZ2 C12 C22 SING Y N 29 VZ2 C22 N4 SING N N 30 VZ2 C23 N4 SING N N 31 VZ2 C24 C23 SING N N 32 VZ2 C25 C24 SING N N 33 VZ2 C26 C25 SING N N 34 VZ2 N5 C26 SING N N 35 VZ2 N4 C27 SING N N 36 VZ2 C27 C10 SING N N 37 VZ2 O1 C27 DOUB N N 38 VZ2 C9 C28 SING Y N 39 VZ2 C28 CL SING N N 40 VZ2 C29 C28 DOUB Y N 41 VZ2 C6 C29 SING Y N 42 VZ2 N6 C5 DOUB Y N 43 VZ2 C1 N6 SING Y N 44 VZ2 C H SING N N 45 VZ2 C H1 SING N N 46 VZ2 C H2 SING N N 47 VZ2 C3 H4 SING N N 48 VZ2 C4 H5 SING N N 49 VZ2 C7 H6 SING N N 50 VZ2 C8 H7 SING N N 51 VZ2 C11 H8 SING N N 52 VZ2 C13 H9 SING N N 53 VZ2 C15 H12 SING N N 54 VZ2 C15 H11 SING N N 55 VZ2 C16 H13 SING N N 56 VZ2 C16 H14 SING N N 57 VZ2 C17 H15 SING N N 58 VZ2 C17 H16 SING N N 59 VZ2 C18 H18 SING N N 60 VZ2 C18 H17 SING N N 61 VZ2 C19 H19 SING N N 62 VZ2 C19 H20 SING N N 63 VZ2 C2 H3 SING N N 64 VZ2 C20 H22 SING N N 65 VZ2 C20 H21 SING N N 66 VZ2 C23 H24 SING N N 67 VZ2 C23 H23 SING N N 68 VZ2 C24 H26 SING N N 69 VZ2 C24 H25 SING N N 70 VZ2 C25 H27 SING N N 71 VZ2 C25 H28 SING N N 72 VZ2 C26 H30 SING N N 73 VZ2 C26 H29 SING N N 74 VZ2 C29 H33 SING N N 75 VZ2 N1 H10 SING N N 76 VZ2 N5 H32 SING N N 77 VZ2 N5 H34 SING N N 78 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor VZ2 InChI InChI 1.06 "InChI=1S/C30H34ClN7O2/c1-20-7-4-8-26(35-20)21-10-11-23(25(31)18-21)24-17-22-19-34-30(33-13-6-15-37-14-5-9-27(37)39)36-28(22)38(29(24)40)16-3-2-12-32/h4,7-8,10-11,17-19H,2-3,5-6,9,12-16,32H2,1H3,(H,33,34,36)" VZ2 InChIKey InChI 1.06 JKMPPFJOKQMACK-UHFFFAOYSA-N VZ2 SMILES_CANONICAL CACTVS 3.385 "Cc1cccc(n1)c2ccc(c(Cl)c2)C3=Cc4cnc(NCCCN5CCCC5=O)nc4N(CCCCN)C3=O" VZ2 SMILES CACTVS 3.385 "Cc1cccc(n1)c2ccc(c(Cl)c2)C3=Cc4cnc(NCCCN5CCCC5=O)nc4N(CCCCN)C3=O" VZ2 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "Cc1cccc(n1)c2ccc(c(c2)Cl)C3=Cc4cnc(nc4N(C3=O)CCCCN)NCCCN5CCCC5=O" VZ2 SMILES "OpenEye OEToolkits" 2.0.7 "Cc1cccc(n1)c2ccc(c(c2)Cl)C3=Cc4cnc(nc4N(C3=O)CCCCN)NCCCN5CCCC5=O" # _pdbx_chem_comp_identifier.comp_id VZ2 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "8-(4-azanylbutyl)-6-[2-chloranyl-4-(6-methylpyridin-2-yl)phenyl]-2-[3-(2-oxidanylidenepyrrolidin-1-yl)propylamino]pyrido[2,3-d]pyrimidin-7-one" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site VZ2 "Create component" 2023-09-20 PDBE VZ2 "Initial release" 2023-11-08 RCSB #