data_VZB # _chem_comp.id VZB _chem_comp.name "(1R,2S,5R)-3-[(cyclohexyloxy)acetyl]-N-{(2R)-1-hydroxy-3-[(3S)-2-oxopyrrolidin-3-yl]propan-2-yl}-6,6-dimethyl-3-azabicyclo[3.1.0]hexane-2-carboxamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C23 H37 N3 O5" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms MPI64 _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-09-20 _chem_comp.pdbx_modified_date 2024-09-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 435.557 _chem_comp.one_letter_code ? _chem_comp.three_letter_code VZB _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8U9H _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal VZB C1 C1 C 0 1 N N N N N N -7.710 -18.986 -18.140 5.139 1.266 0.322 C1 VZB 1 VZB C11 C2 C 0 1 N N N N N N -9.371 -17.449 -19.025 3.129 -0.039 0.364 C11 VZB 2 VZB C12 C3 C 0 1 N N N N N N -9.606 -16.211 -18.198 1.760 -0.145 -0.256 C12 VZB 3 VZB C13 C4 C 0 1 N N N N N N -8.069 -15.047 -19.779 1.164 -2.191 1.129 C13 VZB 4 VZB C14 C5 C 0 1 N N S N N N -9.099 -13.883 -17.888 -0.453 -1.394 -0.377 C14 VZB 5 VZB C15 C6 C 0 1 N N N N N N -10.515 -13.384 -18.045 -1.484 -0.866 0.588 C15 VZB 6 VZB C16 C7 C 0 1 N N S N N N -7.552 -13.619 -19.778 0.527 -3.458 0.518 C16 VZB 7 VZB C17 C8 C 0 1 N N S N N N -12.514 -12.459 -16.996 -3.768 -0.215 1.133 C17 VZB 8 VZB C18 C9 C 0 1 N N N N N N -6.632 -13.313 -18.602 0.725 -3.715 -0.977 C18 VZB 9 VZB C19 C10 C 0 1 N N N N N N -13.420 -13.230 -16.031 -4.899 0.458 0.353 C19 VZB 10 VZB C2 C11 C 0 1 N N N N N N -7.286 -19.518 -16.767 5.493 2.754 0.282 C2 VZB 11 VZB C20 C12 C 0 1 N N S N N N -13.503 -14.696 -16.433 -4.356 1.692 -0.370 C20 VZB 12 VZB C21 C13 C 0 1 N N N N N N -14.270 -14.890 -17.738 -3.891 2.757 0.650 C21 VZB 13 VZB C22 C14 C 0 1 N N N N N N -15.037 -16.192 -17.530 -4.296 4.069 -0.058 C22 VZB 14 VZB C23 C15 C 0 1 N N N N N N -6.203 -14.375 -17.584 1.831 -2.932 -1.687 C23 VZB 15 VZB C24 C16 C 0 1 N N N N N N -14.291 -15.513 -15.449 -5.457 2.376 -1.150 C24 VZB 16 VZB C25 C17 C 0 1 N N N N N N -5.719 -12.088 -18.724 0.499 -5.141 -1.484 C25 VZB 17 VZB C3 C18 C 0 1 N N N N N N -5.839 -20.000 -16.741 6.903 2.958 0.841 C3 VZB 18 VZB C34 C19 C 0 1 N N R N N N -8.113 -12.906 -18.545 -0.538 -2.932 -0.467 C34 VZB 19 VZB C4 C20 C 0 1 N N N N N N -5.289 -19.998 -18.147 7.906 2.171 -0.006 C4 VZB 20 VZB C5 C21 C 0 1 N N N N N N -5.375 -18.604 -18.738 7.552 0.684 0.034 C5 VZB 21 VZB C6 C22 C 0 1 N N N N N N -6.695 -17.907 -18.453 6.142 0.480 -0.525 C6 VZB 22 VZB C8 C23 C 0 1 N N N N N N -12.506 -10.982 -16.602 -4.335 -1.373 1.957 C8 VZB 23 VZB N13 N1 N 0 1 N N N N N N -8.956 -15.133 -18.618 0.921 -1.129 0.125 N13 VZB 24 VZB N16 N2 N 0 1 N N N N N N -11.151 -12.983 -16.949 -2.766 -0.727 0.195 N16 VZB 25 VZB N23 N3 N 0 1 N N N N N N -15.119 -16.348 -16.083 -5.404 3.707 -0.949 N23 VZB 26 VZB O1 O1 O 0 1 N N N N N N -9.062 -18.508 -18.128 3.822 1.076 -0.200 O1 VZB 27 VZB O26 O2 O 0 1 N N N N N N -14.149 -15.405 -14.244 -6.270 1.811 -1.850 O26 VZB 28 VZB O33 O3 O 0 1 N N N N N N -10.346 -16.203 -17.217 1.411 0.656 -1.098 O33 VZB 29 VZB O38 O4 O 0 1 N N N N N N -11.052 -13.362 -19.153 -1.160 -0.567 1.718 O38 VZB 30 VZB O9 O5 O 0 1 N N N N N N -13.811 -10.401 -16.763 -5.044 -2.266 1.097 O9 VZB 31 VZB H1 H1 H 0 1 N N N N N N -7.606 -19.796 -18.877 5.176 0.911 1.352 H1 VZB 32 VZB H11 H2 H 0 1 N N N N N N -10.276 -17.695 -19.599 3.031 0.100 1.440 H11 VZB 33 VZB H111 H3 H 0 0 N N N N N N -8.531 -17.285 -19.717 3.689 -0.953 0.165 H111 VZB 34 VZB H13 H4 H 0 1 N N N N N N -8.624 -15.256 -20.705 0.680 -1.940 2.073 H13 VZB 35 VZB H131 H5 H 0 0 N N N N N N -7.236 -15.759 -19.682 2.234 -2.336 1.278 H131 VZB 36 VZB H14 H6 H 0 1 N N N N N N -8.852 -14.011 -16.824 -0.590 -0.947 -1.362 H14 VZB 37 VZB H16 H7 H 0 1 N N N N N N -7.438 -13.071 -20.725 0.328 -4.296 1.186 H16 VZB 38 VZB H17 H8 H 0 1 N N N N N N -12.916 -12.554 -18.015 -3.303 0.512 1.800 H17 VZB 39 VZB H19 H9 H 0 1 N N N N N N -14.428 -12.791 -16.053 -5.304 -0.242 -0.377 H19 VZB 40 VZB H191 H10 H 0 0 N N N N N N -13.010 -13.157 -15.013 -5.687 0.760 1.044 H191 VZB 41 VZB H24 H11 H 0 1 N N N N N N -7.401 -18.712 -16.027 5.456 3.109 -0.748 H24 VZB 42 VZB H2 H12 H 0 1 N N N N N N -7.942 -20.359 -16.498 4.779 3.314 0.885 H2 VZB 43 VZB H20 H13 H 0 1 N N N N N N -12.489 -15.109 -16.536 -3.536 1.414 -1.033 H20 VZB 44 VZB H21 H14 H 0 1 N N N N N N -13.578 -14.976 -18.588 -4.418 2.646 1.597 H21 VZB 45 VZB H211 H15 H 0 0 N N N N N N -14.962 -14.053 -17.912 -2.812 2.710 0.798 H211 VZB 46 VZB H221 H16 H 0 0 N N N N N N -14.496 -17.037 -17.981 -4.626 4.806 0.675 H221 VZB 47 VZB H22 H17 H 0 1 N N N N N N -16.043 -16.124 -17.970 -3.458 4.461 -0.635 H22 VZB 48 VZB H232 H18 H 0 0 N N N N N N -5.132 -14.592 -17.709 2.632 -3.613 -1.976 H232 VZB 49 VZB H23 H19 H 0 1 N N N N N N -6.384 -14.001 -16.566 1.423 -2.453 -2.577 H23 VZB 50 VZB H231 H20 H 0 0 N N N N N N -6.785 -15.294 -17.746 2.227 -2.171 -1.014 H231 VZB 51 VZB H252 H21 H 0 0 N N N N N N -4.669 -12.415 -18.762 0.071 -5.747 -0.685 H252 VZB 52 VZB H251 H22 H 0 0 N N N N N N -5.965 -11.538 -19.644 -0.186 -5.121 -2.332 H251 VZB 53 VZB H25 H23 H 0 1 N N N N N N -5.867 -11.432 -17.853 1.451 -5.571 -1.795 H25 VZB 54 VZB H31 H24 H 0 1 N N N N N N -5.239 -19.328 -16.110 7.155 4.018 0.812 H31 VZB 55 VZB H3 H25 H 0 1 N N N N N N -5.798 -21.020 -16.332 6.940 2.603 1.871 H3 VZB 56 VZB H341 H26 H 0 0 N N N N N N -8.379 -11.841 -18.614 -1.527 -3.379 -0.572 H341 VZB 57 VZB H41 H27 H 0 1 N N N N N N -4.238 -20.320 -18.127 7.869 2.526 -1.036 H41 VZB 58 VZB H4 H28 H 0 1 N N N N N N -5.874 -20.693 -18.767 8.910 2.317 0.393 H4 VZB 59 VZB H51 H29 H 0 1 N N N N N N -4.561 -17.996 -18.316 8.266 0.124 -0.569 H51 VZB 60 VZB H5 H30 H 0 1 N N N N N N -5.249 -18.679 -19.828 7.589 0.329 1.064 H5 VZB 61 VZB H6 H31 H 0 1 N N N N N N -7.016 -17.331 -19.334 5.890 -0.580 -0.496 H6 VZB 62 VZB H61 H32 H 0 1 N N N N N N -6.586 -17.230 -17.593 6.105 0.835 -1.555 H61 VZB 63 VZB H81 H33 H 0 1 N N N N N N -12.199 -10.892 -15.550 -3.518 -1.907 2.443 H81 VZB 64 VZB H8 H34 H 0 1 N N N N N N -11.791 -10.443 -17.240 -5.014 -0.981 2.714 H8 VZB 65 VZB HN16 H35 H 0 0 N N N N N N -10.683 -13.042 -16.067 -3.025 -0.967 -0.708 HN16 VZB 66 VZB HN23 H36 H 0 0 N N N N N N -15.721 -17.000 -15.622 -6.018 4.345 -1.345 HN23 VZB 67 VZB HO9 H37 H 0 1 N N N N N N -13.783 -9.485 -16.513 -5.432 -3.026 1.553 HO9 VZB 68 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal VZB O26 C24 DOUB N N 1 VZB C24 N23 SING N N 2 VZB C24 C20 SING N N 3 VZB N23 C22 SING N N 4 VZB C22 C21 SING N N 5 VZB C21 C20 SING N N 6 VZB C20 C19 SING N N 7 VZB C19 C17 SING N N 8 VZB C8 C17 SING N N 9 VZB C17 N16 SING N N 10 VZB O9 C8 SING N N 11 VZB N16 C15 SING N N 12 VZB O38 C15 DOUB N N 13 VZB C15 C14 SING N N 14 VZB C14 C34 SING N N 15 VZB C14 N13 SING N N 16 VZB C34 C18 SING N N 17 VZB C34 C16 SING N N 18 VZB C23 C18 SING N N 19 VZB C25 C18 SING N N 20 VZB C18 C16 SING N N 21 VZB C16 C13 SING N N 22 VZB C13 N13 SING N N 23 VZB N13 C12 SING N N 24 VZB C12 O33 DOUB N N 25 VZB C11 C12 SING N N 26 VZB O1 C11 SING N N 27 VZB C1 O1 SING N N 28 VZB C1 C2 SING N N 29 VZB C6 C1 SING N N 30 VZB C2 C3 SING N N 31 VZB C3 C4 SING N N 32 VZB C4 C5 SING N N 33 VZB C5 C6 SING N N 34 VZB C1 H1 SING N N 35 VZB C11 H11 SING N N 36 VZB C11 H111 SING N N 37 VZB C13 H13 SING N N 38 VZB C13 H131 SING N N 39 VZB C14 H14 SING N N 40 VZB C16 H16 SING N N 41 VZB C17 H17 SING N N 42 VZB C19 H19 SING N N 43 VZB C19 H191 SING N N 44 VZB C2 H24 SING N N 45 VZB C2 H2 SING N N 46 VZB C20 H20 SING N N 47 VZB C21 H21 SING N N 48 VZB C21 H211 SING N N 49 VZB C22 H221 SING N N 50 VZB C22 H22 SING N N 51 VZB C23 H232 SING N N 52 VZB C23 H23 SING N N 53 VZB C23 H231 SING N N 54 VZB C25 H252 SING N N 55 VZB C25 H251 SING N N 56 VZB C25 H25 SING N N 57 VZB C3 H31 SING N N 58 VZB C3 H3 SING N N 59 VZB C34 H341 SING N N 60 VZB C4 H41 SING N N 61 VZB C4 H4 SING N N 62 VZB C5 H51 SING N N 63 VZB C5 H5 SING N N 64 VZB C6 H6 SING N N 65 VZB C6 H61 SING N N 66 VZB C8 H81 SING N N 67 VZB C8 H8 SING N N 68 VZB N16 HN16 SING N N 69 VZB N23 HN23 SING N N 70 VZB O9 HO9 SING N N 71 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor VZB SMILES ACDLabs 12.01 "CC1(C)C2C(C(=O)NC(CC3CCNC3=O)CO)N(CC21)C(=O)COC1CCCCC1" VZB InChI InChI 1.06 "InChI=1S/C23H37N3O5/c1-23(2)17-11-26(18(28)13-31-16-6-4-3-5-7-16)20(19(17)23)22(30)25-15(12-27)10-14-8-9-24-21(14)29/h14-17,19-20,27H,3-13H2,1-2H3,(H,24,29)(H,25,30)/t14-,15+,17-,19-,20-/m0/s1" VZB InChIKey InChI 1.06 ZRLOCCWLJNUDPY-SSGANFLRSA-N VZB SMILES_CANONICAL CACTVS 3.385 "CC1(C)[C@H]2CN([C@@H]([C@@H]12)C(=O)N[C@H](CO)C[C@@H]3CCNC3=O)C(=O)COC4CCCCC4" VZB SMILES CACTVS 3.385 "CC1(C)[CH]2CN([CH]([CH]12)C(=O)N[CH](CO)C[CH]3CCNC3=O)C(=O)COC4CCCCC4" VZB SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC1([C@@H]2[C@H]1[C@H](N(C2)C(=O)COC3CCCCC3)C(=O)N[C@@H](C[C@@H]4CCNC4=O)CO)C" VZB SMILES "OpenEye OEToolkits" 2.0.7 "CC1(C2C1C(N(C2)C(=O)COC3CCCCC3)C(=O)NC(CC4CCNC4=O)CO)C" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier VZB "SYSTEMATIC NAME" ACDLabs 12.01 "(1R,2S,5R)-3-[(cyclohexyloxy)acetyl]-N-{(2R)-1-hydroxy-3-[(3S)-2-oxopyrrolidin-3-yl]propan-2-yl}-6,6-dimethyl-3-azabicyclo[3.1.0]hexane-2-carboxamide" VZB "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(1~{R},2~{S},5~{S})-3-(2-cyclohexyloxyethanoyl)-6,6-dimethyl-~{N}-[(2~{S})-1-oxidanyl-3-[(3~{S})-2-oxidanylidenepyrrolidin-3-yl]propan-2-yl]-3-azabicyclo[3.1.0]hexane-2-carboxamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site VZB "Create component" 2023-09-20 RCSB VZB "Initial release" 2024-09-25 RCSB VZB "Modify PCM" 2024-09-27 PDBE # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id VZB _pdbx_chem_comp_synonyms.name MPI64 _pdbx_chem_comp_synonyms.provenance AUTHOR _pdbx_chem_comp_synonyms.type ? # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id VZB _pdbx_chem_comp_pcm.modified_residue_id CYS _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category "Covalent chemical modification" _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom C8 _pdbx_chem_comp_pcm.modified_residue_id_linking_atom SG _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #