data_VZM # _chem_comp.id VZM _chem_comp.name "N-(6-methoxypyridin-3-yl)-N'-thiophen-2-ylurea" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C11 H11 N3 O2 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2020-09-24 _chem_comp.pdbx_modified_date 2020-11-06 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 249.289 _chem_comp.one_letter_code ? _chem_comp.three_letter_code VZM _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 5RQ1 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal VZM N1 N1 N 0 1 N N N -8.080 15.021 4.762 -2.048 1.276 -0.184 N1 VZM 1 VZM C4 C1 C 0 1 Y N N -6.168 14.823 1.617 1.528 0.745 -0.174 C4 VZM 2 VZM C5 C2 C 0 1 N N N -7.931 15.079 3.369 -0.849 0.671 -0.063 C5 VZM 3 VZM C6 C3 C 0 1 Y N N -9.278 15.063 5.485 -3.223 0.530 -0.054 C6 VZM 4 VZM C7 C4 C 0 1 Y N N -9.358 15.215 6.872 -4.466 1.023 -0.149 C7 VZM 5 VZM C8 C5 C 0 1 Y N N -10.738 15.187 7.300 -5.475 0.088 0.015 C8 VZM 6 VZM C10 C6 C 0 1 Y N N -4.813 14.904 1.299 2.641 1.379 0.358 C10 VZM 7 VZM O1 O1 O 0 1 N N N -8.898 15.210 2.616 -0.790 -0.523 0.159 O1 VZM 8 VZM S S1 S 0 1 Y N N -10.862 14.902 4.754 -3.299 -1.200 0.252 S VZM 9 VZM C9 C7 C 0 1 Y N N -11.625 15.030 6.285 -5.057 -1.157 0.242 C9 VZM 10 VZM N N2 N 0 1 N N N -6.631 14.977 2.939 0.284 1.390 -0.189 N VZM 11 VZM C3 C8 C 0 1 Y N N -7.068 14.726 0.569 1.664 -0.538 -0.699 C3 VZM 12 VZM C2 C9 C 0 1 Y N N -6.615 14.772 -0.730 2.911 -1.136 -0.663 C2 VZM 13 VZM N2 N3 N 0 1 Y N N -4.342 14.918 0.047 3.816 0.778 0.375 N2 VZM 14 VZM C1 C10 C 0 1 Y N N -5.239 14.857 -0.928 3.979 -0.442 -0.110 C1 VZM 15 VZM O O2 O 0 1 N N N -4.872 14.874 -2.222 5.207 -1.020 -0.070 O VZM 16 VZM C C11 C 0 1 N N N -3.480 14.926 -2.529 6.265 -0.256 0.512 C VZM 17 VZM H1 H1 H 0 1 N N N -7.239 14.941 5.297 -2.095 2.229 -0.358 H1 VZM 18 VZM H2 H2 H 0 1 N N N -8.510 15.336 7.530 -4.666 2.067 -0.339 H2 VZM 19 VZM H3 H3 H 0 1 N N N -11.036 15.282 8.334 -6.522 0.348 -0.037 H3 VZM 20 VZM H4 H4 H 0 1 N N N -4.102 14.959 2.110 2.546 2.375 0.764 H4 VZM 21 VZM H5 H5 H 0 1 N N N -12.695 14.990 6.426 -5.700 -2.011 0.393 H5 VZM 22 VZM H6 H6 H 0 1 N N N -5.928 15.017 3.649 0.238 2.354 -0.289 H6 VZM 23 VZM H7 H7 H 0 1 N N N -8.123 14.614 0.770 0.816 -1.054 -1.123 H7 VZM 24 VZM H8 H8 H 0 1 N N N -7.301 14.743 -1.564 3.053 -2.130 -1.061 H8 VZM 25 VZM H9 H9 H 0 1 N N N -3.345 14.934 -3.621 7.189 -0.833 0.480 H9 VZM 26 VZM H10 H10 H 0 1 N N N -3.044 15.840 -2.099 6.395 0.670 -0.048 H10 VZM 27 VZM H11 H11 H 0 1 N N N -2.978 14.045 -2.104 6.018 -0.023 1.547 H11 VZM 28 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal VZM C O SING N N 1 VZM O C1 SING N N 2 VZM C1 C2 DOUB Y N 3 VZM C1 N2 SING Y N 4 VZM C2 C3 SING Y N 5 VZM N2 C10 DOUB Y N 6 VZM C3 C4 DOUB Y N 7 VZM C10 C4 SING Y N 8 VZM C4 N SING N N 9 VZM O1 C5 DOUB N N 10 VZM N C5 SING N N 11 VZM C5 N1 SING N N 12 VZM S C6 SING Y N 13 VZM S C9 SING Y N 14 VZM N1 C6 SING N N 15 VZM C6 C7 DOUB Y N 16 VZM C9 C8 DOUB Y N 17 VZM C7 C8 SING Y N 18 VZM N1 H1 SING N N 19 VZM C7 H2 SING N N 20 VZM C8 H3 SING N N 21 VZM C10 H4 SING N N 22 VZM C9 H5 SING N N 23 VZM N H6 SING N N 24 VZM C3 H7 SING N N 25 VZM C2 H8 SING N N 26 VZM C H9 SING N N 27 VZM C H10 SING N N 28 VZM C H11 SING N N 29 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor VZM SMILES ACDLabs 12.01 "N(c1cccs1)C(=O)Nc2cnc(cc2)OC" VZM InChI InChI 1.03 "InChI=1S/C11H11N3O2S/c1-16-9-5-4-8(7-12-9)13-11(15)14-10-3-2-6-17-10/h2-7H,1H3,(H2,13,14,15)" VZM InChIKey InChI 1.03 QQTNSKDCQAMODS-UHFFFAOYSA-N VZM SMILES_CANONICAL CACTVS 3.385 "COc1ccc(NC(=O)Nc2sccc2)cn1" VZM SMILES CACTVS 3.385 "COc1ccc(NC(=O)Nc2sccc2)cn1" VZM SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "COc1ccc(cn1)NC(=O)Nc2cccs2" VZM SMILES "OpenEye OEToolkits" 2.0.7 "COc1ccc(cn1)NC(=O)Nc2cccs2" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier VZM "SYSTEMATIC NAME" ACDLabs 12.01 "N-(6-methoxypyridin-3-yl)-N'-thiophen-2-ylurea" VZM "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "1-(6-methoxypyridin-3-yl)-3-thiophen-2-yl-urea" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site VZM "Create component" 2020-09-24 RCSB VZM "Initial release" 2020-11-11 RCSB ##