data_VZP # _chem_comp.id VZP _chem_comp.name "N-[(3R)-1,1-dioxo-1lambda~6~-thiolan-3-yl]-N-methyl-N'-propan-2-ylurea" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C9 H18 N2 O3 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2020-09-24 _chem_comp.pdbx_modified_date 2021-01-08 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 234.316 _chem_comp.one_letter_code ? _chem_comp.three_letter_code VZP _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 5RQ7 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal VZP N1 N1 N 0 1 N N N 19.857 28.016 5.348 0.619 -0.362 0.221 N1 VZP 1 VZP C4 C1 C 0 1 N N N 19.571 28.109 3.918 0.612 -1.710 0.794 C4 VZP 2 VZP C5 C2 C 0 1 N N R 21.047 27.251 5.767 -0.640 0.370 0.055 C5 VZP 3 VZP C6 C3 C 0 1 N N N 22.329 28.066 5.843 -1.319 0.548 1.424 C6 VZP 4 VZP C7 C4 C 0 1 N N N 22.895 28.025 4.430 -2.770 1.018 1.142 C7 VZP 5 VZP C8 C5 C 0 1 N N N 21.390 25.974 5.011 -1.585 -0.428 -0.865 C8 VZP 6 VZP O2 O1 O 0 1 N N N 23.953 25.681 4.352 -3.953 0.733 -1.229 O2 VZP 7 VZP S S1 S 0 1 N N N 22.773 26.402 3.958 -3.270 -0.051 -0.261 S VZP 8 VZP O1 O2 O 0 1 N N N 22.374 26.326 2.579 -3.869 -1.237 0.242 O1 VZP 9 VZP C3 C6 C 0 1 N N N 19.153 28.673 6.328 1.783 0.208 -0.147 C3 VZP 10 VZP O O3 O 0 1 N N N 19.385 28.498 7.517 1.788 1.330 -0.618 O VZP 11 VZP N N2 N 0 1 N N N 18.194 29.520 5.923 2.941 -0.464 0.005 N VZP 12 VZP C1 C7 C 0 1 N N N 17.352 30.251 6.873 4.206 0.156 -0.396 C1 VZP 13 VZP C2 C8 C 0 1 N N N 17.661 31.717 6.789 4.732 1.027 0.747 C2 VZP 14 VZP C C9 C 0 1 N N N 15.907 29.978 6.578 5.229 -0.936 -0.717 C VZP 15 VZP H1 H1 H 0 1 N N N 18.660 28.706 3.764 0.503 -2.444 -0.005 H1 VZP 16 VZP H2 H2 H 0 1 N N N 20.416 28.591 3.406 1.550 -1.885 1.322 H2 VZP 17 VZP H3 H3 H 0 1 N N N 19.421 27.099 3.508 -0.220 -1.805 1.491 H3 VZP 18 VZP H4 H4 H 0 1 N N N 20.847 26.930 6.800 -0.441 1.347 -0.385 H4 VZP 19 VZP H5 H5 H 0 1 N N N 23.034 27.615 6.557 -1.332 -0.401 1.961 H5 VZP 20 VZP H6 H6 H 0 1 N N N 22.113 29.102 6.145 -0.789 1.300 2.009 H6 VZP 21 VZP H7 H7 H 0 1 N N N 23.945 28.352 4.424 -3.408 0.844 2.008 H7 VZP 22 VZP H8 H8 H 0 1 N N N 22.307 28.668 3.759 -2.786 2.070 0.856 H8 VZP 23 VZP H9 H9 H 0 1 N N N 20.533 25.643 4.406 -1.472 -0.101 -1.899 H9 VZP 24 VZP H10 H10 H 0 1 N N N 21.673 25.176 5.713 -1.382 -1.496 -0.783 H10 VZP 25 VZP H11 H11 H 0 1 N N N 18.050 29.656 4.943 2.936 -1.358 0.381 H11 VZP 26 VZP H12 H12 H 0 1 N N N 17.574 29.903 7.893 4.044 0.773 -1.279 H12 VZP 27 VZP H13 H13 H 0 1 N N N 17.029 32.267 7.502 4.893 0.410 1.630 H13 VZP 28 VZP H14 H14 H 0 1 N N N 18.720 31.883 7.034 5.673 1.488 0.448 H14 VZP 29 VZP H15 H15 H 0 1 N N N 17.460 32.076 5.769 4.003 1.805 0.975 H15 VZP 30 VZP H16 H16 H 0 1 N N N 15.276 30.528 7.292 4.855 -1.557 -1.531 H16 VZP 31 VZP H17 H17 H 0 1 N N N 15.673 30.306 5.554 6.171 -0.475 -1.015 H17 VZP 32 VZP H18 H18 H 0 1 N N N 15.711 28.900 6.671 5.391 -1.553 0.167 H18 VZP 33 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal VZP O1 S DOUB N N 1 VZP C4 N1 SING N N 2 VZP S O2 DOUB N N 3 VZP S C7 SING N N 4 VZP S C8 SING N N 5 VZP C7 C6 SING N N 6 VZP C8 C5 SING N N 7 VZP N1 C5 SING N N 8 VZP N1 C3 SING N N 9 VZP C5 C6 SING N N 10 VZP N C3 SING N N 11 VZP N C1 SING N N 12 VZP C3 O DOUB N N 13 VZP C C1 SING N N 14 VZP C2 C1 SING N N 15 VZP C4 H1 SING N N 16 VZP C4 H2 SING N N 17 VZP C4 H3 SING N N 18 VZP C5 H4 SING N N 19 VZP C6 H5 SING N N 20 VZP C6 H6 SING N N 21 VZP C7 H7 SING N N 22 VZP C7 H8 SING N N 23 VZP C8 H9 SING N N 24 VZP C8 H10 SING N N 25 VZP N H11 SING N N 26 VZP C1 H12 SING N N 27 VZP C2 H13 SING N N 28 VZP C2 H14 SING N N 29 VZP C2 H15 SING N N 30 VZP C H16 SING N N 31 VZP C H17 SING N N 32 VZP C H18 SING N N 33 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor VZP SMILES ACDLabs 12.01 "N(C1CCS(C1)(=O)=O)(C(=O)NC(C)C)C" VZP InChI InChI 1.03 "InChI=1S/C9H18N2O3S/c1-7(2)10-9(12)11(3)8-4-5-15(13,14)6-8/h7-8H,4-6H2,1-3H3,(H,10,12)/t8-/m1/s1" VZP InChIKey InChI 1.03 RMWFRPZNASSVCZ-MRVPVSSYSA-N VZP SMILES_CANONICAL CACTVS 3.385 "CC(C)NC(=O)N(C)[C@@H]1CC[S](=O)(=O)C1" VZP SMILES CACTVS 3.385 "CC(C)NC(=O)N(C)[CH]1CC[S](=O)(=O)C1" VZP SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC(C)NC(=O)N(C)[C@@H]1CCS(=O)(=O)C1" VZP SMILES "OpenEye OEToolkits" 2.0.7 "CC(C)NC(=O)N(C)C1CCS(=O)(=O)C1" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier VZP "SYSTEMATIC NAME" ACDLabs 12.01 "N-[(3R)-1,1-dioxo-1lambda~6~-thiolan-3-yl]-N-methyl-N'-propan-2-ylurea" VZP "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "1-[(3~{R})-1,1-bis(oxidanylidene)thiolan-3-yl]-1-methyl-3-propan-2-yl-urea" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site VZP "Create component" 2020-09-24 RCSB VZP "Initial release" 2021-01-13 RCSB ##