data_W08 # _chem_comp.id W08 _chem_comp.name "(2S,3S,4R,5R)-5-(6-aminopurin-9-yl)-N-(1-methylpiperidin-4-yl)-3,4-bis(oxidanyl)oxolane-2-carboxamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C16 H23 N7 O4" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "(2S,3S,4R,5R)-5-(6-Amino-9H-purin-9-yl)-3,4-dihydroxy-N-(1-methyl-4-piperidinyl)tetrahydro-2-furancarboxamide; (2S,3S,4R,5R)-5-(6-aminopurin-9-yl)-3,4-dihydroxy-N-(1-methylpiperidin-4-yl)oxolane-2-carboxamide" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-04-21 _chem_comp.pdbx_modified_date 2023-05-19 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 377.398 _chem_comp.one_letter_code ? _chem_comp.three_letter_code W08 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8OTR _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal W08 C02 C1 C 0 1 N N N 77.585 -10.413 8.760 1.935 0.138 0.281 C02 W08 1 W08 C05 C2 C 0 1 N N N 75.154 -9.106 6.399 5.316 -0.754 -0.859 C05 W08 2 W08 C08 C3 C 0 1 N N N 75.645 -6.566 7.333 6.278 1.425 0.789 C08 W08 3 W08 C09 C4 C 0 1 N N N 76.617 -7.674 7.693 4.960 0.722 1.122 C09 W08 4 W08 C11 C5 C 0 1 N N S 78.714 -11.415 8.777 0.668 -0.607 0.609 C11 W08 5 W08 C13 C6 C 0 1 N N R 80.327 -11.913 7.350 -1.624 -0.504 0.519 C13 W08 6 W08 C15 C7 C 0 1 Y N N 80.087 -11.255 5.005 -4.087 0.028 0.272 C15 W08 7 W08 C17 C8 C 0 1 Y N N 78.738 -9.754 3.793 -6.077 -0.988 0.808 C17 W08 8 W08 C19 C9 C 0 1 Y N N 80.287 -10.996 2.633 -6.202 1.067 -0.235 C19 W08 9 W08 C23 C10 C 0 1 Y N N 81.605 -12.779 5.495 -2.686 1.543 -0.507 C23 W08 10 W08 C24 C11 C 0 1 N N R 80.662 -10.502 7.947 -1.249 -1.495 -0.605 C24 W08 11 W08 C26 C12 C 0 1 N N S 80.086 -10.553 9.045 0.293 -1.565 -0.545 C26 W08 12 W08 C04 C13 C 0 1 N N N 75.977 -8.952 7.573 4.330 0.193 -0.169 C04 W08 13 W08 C06 C14 C 0 1 N N N 75.125 -7.947 5.403 6.623 -0.007 -1.134 C06 W08 14 W08 C10 C15 C 0 1 N N N 74.305 -5.964 5.774 8.511 1.079 -0.078 C10 W08 15 W08 C21 C16 C 0 1 Y N N 80.704 -11.619 3.865 -4.798 1.112 -0.270 C21 W08 16 W08 N03 N1 N 0 1 N N N 77.048 -9.935 7.498 3.097 -0.532 0.149 N03 W08 17 W08 N07 N2 N 0 1 N N N 75.301 -6.619 5.943 7.187 0.478 0.132 N07 W08 18 W08 N14 N3 N 0 1 Y N N 80.638 -11.971 6.036 -2.758 0.328 0.108 N14 W08 19 W08 N16 N4 N 0 1 Y N N 79.088 -10.302 4.953 -4.761 -0.989 0.798 N16 W08 20 W08 N18 N5 N 0 1 Y N N 79.316 -10.085 2.647 -6.789 0.005 0.306 N18 W08 21 W08 N20 N6 N 0 1 N N N 80.937 -11.379 1.384 -6.957 2.103 -0.758 N20 W08 22 W08 N22 N7 N 0 1 Y N N 81.636 -12.557 4.141 -3.884 2.000 -0.728 N22 W08 23 W08 O01 O1 O 0 1 N N N 77.145 -9.991 9.779 1.910 1.342 0.131 O01 W08 24 W08 O12 O2 O 0 1 N N N 78.849 -11.982 7.624 -0.445 0.309 0.703 O12 W08 25 W08 O25 O3 O 0 1 N N N 82.155 -10.329 8.138 -1.819 -2.780 -0.350 O25 W08 26 W08 O27 O4 O 0 1 N N N 80.943 -11.259 10.033 0.723 -2.895 -0.250 O27 W08 27 W08 H1 H1 H 0 1 N N N 74.122 -9.274 6.740 5.514 -1.608 -0.212 H1 W08 28 W08 H2 H2 H 0 1 N N N 75.512 -9.996 5.860 4.890 -1.101 -1.800 H2 W08 29 W08 H3 H3 H 0 1 N N N 76.110 -5.594 7.552 6.083 2.265 0.122 H3 W08 30 W08 H4 H4 H 0 1 N N N 74.731 -6.679 7.935 6.736 1.791 1.708 H4 W08 31 W08 H5 H5 H 0 1 N N N 77.481 -7.635 7.013 5.152 -0.109 1.800 H5 W08 32 W08 H6 H6 H 0 1 N N N 76.959 -7.535 8.729 4.280 1.429 1.597 H6 W08 33 W08 H7 H7 H 0 1 N N N 78.580 -12.124 9.607 0.784 -1.162 1.540 H7 W08 34 W08 H8 H8 H 0 1 N N N 80.851 -12.683 7.935 -1.861 -1.043 1.437 H8 W08 35 W08 H9 H9 H 0 1 N N N 77.954 -9.012 3.784 -6.594 -1.830 1.244 H9 W08 36 W08 H10 H10 H 0 1 N N N 82.232 -13.469 6.039 -1.770 2.050 -0.771 H10 W08 37 W08 H11 H11 H 0 1 N N N 80.281 -9.724 7.269 -1.579 -1.117 -1.573 H11 W08 38 W08 H12 H12 H 0 1 N N N 79.794 -9.569 9.441 0.728 -1.220 -1.483 H12 W08 39 W08 H13 H13 H 0 1 N N N 75.372 -9.145 8.471 4.101 1.027 -0.832 H13 W08 40 W08 H14 H14 H 0 1 N N N 74.151 -7.972 4.892 7.333 -0.683 -1.613 H14 W08 41 W08 H15 H15 H 0 1 N N N 75.928 -8.117 4.671 6.427 0.839 -1.793 H15 W08 42 W08 H16 H16 H 0 1 N N N 74.453 -4.956 6.190 8.424 1.919 -0.767 H16 W08 43 W08 H17 H17 H 0 1 N N N 74.094 -5.889 4.697 8.906 1.430 0.876 H17 W08 44 W08 H18 H18 H 0 1 N N N 73.457 -6.448 6.281 9.186 0.333 -0.498 H18 W08 45 W08 H19 H19 H 0 1 N N N 77.397 -10.265 6.621 3.117 -1.495 0.266 H19 W08 46 W08 H21 H21 H 0 1 N N N 80.536 -10.863 0.627 -7.925 2.058 -0.734 H21 W08 47 W08 H22 H22 H 0 1 N N N 81.915 -11.179 1.442 -6.517 2.873 -1.151 H22 W08 48 W08 H23 H23 H 0 1 N N N 82.331 -9.468 8.500 -1.615 -3.442 -1.025 H23 W08 49 W08 H24 H24 H 0 1 N N N 80.497 -11.295 10.871 1.680 -2.984 -0.142 H24 W08 50 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal W08 N20 C19 SING N N 1 W08 C19 N18 DOUB Y N 2 W08 C19 C21 SING Y N 3 W08 N18 C17 SING Y N 4 W08 C17 N16 DOUB Y N 5 W08 C21 N22 SING Y N 6 W08 C21 C15 DOUB Y N 7 W08 N22 C23 DOUB Y N 8 W08 N16 C15 SING Y N 9 W08 C15 N14 SING Y N 10 W08 C06 N07 SING N N 11 W08 C06 C05 SING N N 12 W08 C23 N14 SING Y N 13 W08 C10 N07 SING N N 14 W08 N07 C08 SING N N 15 W08 N14 C13 SING N N 16 W08 C05 C04 SING N N 17 W08 C08 C09 SING N N 18 W08 C13 O12 SING N N 19 W08 C13 C24 SING N N 20 W08 N03 C04 SING N N 21 W08 N03 C02 SING N N 22 W08 C04 C09 SING N N 23 W08 O12 C11 SING N N 24 W08 C24 O25 SING N N 25 W08 C24 C26 SING N N 26 W08 C02 C11 SING N N 27 W08 C02 O01 DOUB N N 28 W08 C11 C26 SING N N 29 W08 C26 O27 SING N N 30 W08 C05 H1 SING N N 31 W08 C05 H2 SING N N 32 W08 C08 H3 SING N N 33 W08 C08 H4 SING N N 34 W08 C09 H5 SING N N 35 W08 C09 H6 SING N N 36 W08 C11 H7 SING N N 37 W08 C13 H8 SING N N 38 W08 C17 H9 SING N N 39 W08 C23 H10 SING N N 40 W08 C24 H11 SING N N 41 W08 C26 H12 SING N N 42 W08 C04 H13 SING N N 43 W08 C06 H14 SING N N 44 W08 C06 H15 SING N N 45 W08 C10 H16 SING N N 46 W08 C10 H17 SING N N 47 W08 C10 H18 SING N N 48 W08 N03 H19 SING N N 49 W08 N20 H21 SING N N 50 W08 N20 H22 SING N N 51 W08 O25 H23 SING N N 52 W08 O27 H24 SING N N 53 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor W08 InChI InChI 1.06 "InChI=1S/C16H23N7O4/c1-22-4-2-8(3-5-22)21-15(26)12-10(24)11(25)16(27-12)23-7-20-9-13(17)18-6-19-14(9)23/h6-8,10-12,16,24-25H,2-5H2,1H3,(H,21,26)(H2,17,18,19)/t10-,11+,12-,16+/m0/s1" W08 InChIKey InChI 1.06 ROJYDYHGBJZLCS-MEQWQQMJSA-N W08 SMILES_CANONICAL CACTVS 3.385 "CN1CCC(CC1)NC(=O)[C@H]2O[C@H]([C@H](O)[C@@H]2O)n3cnc4c(N)ncnc34" W08 SMILES CACTVS 3.385 "CN1CCC(CC1)NC(=O)[CH]2O[CH]([CH](O)[CH]2O)n3cnc4c(N)ncnc34" W08 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CN1CCC(CC1)NC(=O)[C@@H]2[C@H]([C@H]([C@@H](O2)n3cnc4c3ncnc4N)O)O" W08 SMILES "OpenEye OEToolkits" 2.0.7 "CN1CCC(CC1)NC(=O)C2C(C(C(O2)n3cnc4c3ncnc4N)O)O" # _pdbx_chem_comp_identifier.comp_id W08 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(2~{S},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-~{N}-(1-methylpiperidin-4-yl)-3,4-bis(oxidanyl)oxolane-2-carboxamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site W08 "Create component" 2023-04-21 PDBE W08 "Modify name" 2023-04-27 PDBE W08 "Initial release" 2023-05-24 RCSB # loop_ _pdbx_chem_comp_synonyms.ordinal _pdbx_chem_comp_synonyms.comp_id _pdbx_chem_comp_synonyms.name _pdbx_chem_comp_synonyms.provenance _pdbx_chem_comp_synonyms.type 1 W08 "(2S,3S,4R,5R)-5-(6-Amino-9H-purin-9-yl)-3,4-dihydroxy-N-(1-methyl-4-piperidinyl)tetrahydro-2-furancarboxamide" AUTHOR ? 2 W08 "(2S,3S,4R,5R)-5-(6-aminopurin-9-yl)-3,4-dihydroxy-N-(1-methylpiperidin-4-yl)oxolane-2-carboxamide" PUBCHEM ? #