data_W0A # _chem_comp.id W0A _chem_comp.name "N-[(1H-benzimidazol-2-yl)methyl]butanamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C12 H15 N3 O" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2020-09-24 _chem_comp.pdbx_modified_date 2021-01-08 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 217.267 _chem_comp.one_letter_code ? _chem_comp.three_letter_code W0A _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 5RQD _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal W0A N1 N1 N 0 1 Y N N 14.685 6.166 11.477 -1.512 0.985 0.773 N1 W0A 1 W0A C4 C1 C 0 1 N N N 14.535 8.652 11.249 0.673 1.133 -0.523 C4 W0A 2 W0A C5 C2 C 0 1 Y N N 14.705 7.249 10.717 -0.747 0.674 -0.308 C5 W0A 3 W0A C6 C3 C 0 1 Y N N 14.917 5.111 10.603 -2.737 0.374 0.599 C6 W0A 4 W0A C7 C4 C 0 1 Y N N 15.038 3.748 10.843 -3.905 0.318 1.347 C7 W0A 5 W0A C8 C5 C 0 1 Y N N 15.297 2.909 9.769 -4.982 -0.403 0.878 C8 W0A 6 W0A C10 C6 C 0 1 Y N N 15.303 4.771 8.229 -3.768 -1.024 -1.088 C10 W0A 7 W0A O O1 O 0 1 N N N 16.237 8.983 13.403 3.360 1.322 -0.614 O W0A 8 W0A C3 C7 C 0 1 N N N 15.045 8.774 13.618 2.928 0.294 -0.139 C3 W0A 9 W0A C2 C8 C 0 1 N N N 14.492 8.725 15.021 3.878 -0.769 0.350 C2 W0A 10 W0A C1 C9 C 0 1 N N N 15.389 8.045 15.969 5.319 -0.303 0.132 C1 W0A 11 W0A C C10 C 0 1 N N N 16.086 9.051 16.806 6.284 -1.382 0.628 C W0A 12 W0A N N2 N 0 1 N N N 14.150 8.624 12.644 1.597 0.101 -0.048 N W0A 13 W0A N2 N3 N 0 1 Y N N 14.923 6.973 9.412 -1.419 -0.078 -1.130 N2 W0A 14 W0A C11 C11 C 0 1 Y N N 15.058 5.603 9.306 -2.661 -0.303 -0.630 C11 W0A 15 W0A C9 C12 C 0 1 Y N N 15.426 3.414 8.480 -4.907 -1.071 -0.336 C9 W0A 16 W0A H1 H1 H 0 1 N N N 14.536 6.117 12.465 -1.244 1.533 1.528 H1 W0A 17 W0A H2 H2 H 0 1 N N N 15.486 9.195 11.147 0.841 1.311 -1.585 H2 W0A 18 W0A H3 H3 H 0 1 N N N 13.755 9.167 10.669 0.844 2.056 0.031 H3 W0A 19 W0A H4 H4 H 0 1 N N N 14.933 3.351 11.842 -3.968 0.836 2.293 H4 W0A 20 W0A H5 H5 H 0 1 N N N 15.400 1.847 9.937 -5.891 -0.447 1.459 H5 W0A 21 W0A H6 H6 H 0 1 N N N 15.395 5.165 7.228 -3.720 -1.548 -2.031 H6 W0A 22 W0A H7 H7 H 0 1 N N N 14.329 9.755 15.370 3.710 -0.946 1.412 H7 W0A 23 W0A H8 H8 H 0 1 N N N 13.532 8.189 15.001 3.707 -1.692 -0.204 H8 W0A 24 W0A H9 H9 H 0 1 N N N 14.800 7.377 16.615 5.487 -0.126 -0.930 H9 W0A 25 W0A H10 H10 H 0 1 N N N 16.132 7.455 15.411 5.490 0.620 0.686 H10 W0A 26 W0A H11 H11 H 0 1 N N N 16.756 8.540 17.513 6.116 -1.559 1.691 H11 W0A 27 W0A H12 H12 H 0 1 N N N 16.675 9.719 16.161 6.114 -2.305 0.074 H12 W0A 28 W0A H13 H13 H 0 1 N N N 15.344 9.641 17.364 7.311 -1.049 0.473 H13 W0A 29 W0A H14 H14 H 0 1 N N N 13.188 8.489 12.882 1.251 -0.722 0.333 H14 W0A 30 W0A H16 H16 H 0 1 N N N 15.625 2.738 7.662 -5.760 -1.629 -0.693 H16 W0A 31 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal W0A C10 C9 DOUB Y N 1 W0A C10 C11 SING Y N 2 W0A C9 C8 SING Y N 3 W0A C11 N2 SING Y N 4 W0A C11 C6 DOUB Y N 5 W0A N2 C5 DOUB Y N 6 W0A C8 C7 DOUB Y N 7 W0A C6 C7 SING Y N 8 W0A C6 N1 SING Y N 9 W0A C5 C4 SING N N 10 W0A C5 N1 SING Y N 11 W0A C4 N SING N N 12 W0A N C3 SING N N 13 W0A O C3 DOUB N N 14 W0A C3 C2 SING N N 15 W0A C2 C1 SING N N 16 W0A C1 C SING N N 17 W0A N1 H1 SING N N 18 W0A C4 H2 SING N N 19 W0A C4 H3 SING N N 20 W0A C7 H4 SING N N 21 W0A C8 H5 SING N N 22 W0A C10 H6 SING N N 23 W0A C2 H7 SING N N 24 W0A C2 H8 SING N N 25 W0A C1 H9 SING N N 26 W0A C1 H10 SING N N 27 W0A C H11 SING N N 28 W0A C H12 SING N N 29 W0A C H13 SING N N 30 W0A N H14 SING N N 31 W0A C9 H16 SING N N 32 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor W0A SMILES ACDLabs 12.01 "n1c(CNC(=O)CCC)nc2c1cccc2" W0A InChI InChI 1.03 "InChI=1S/C12H15N3O/c1-2-5-12(16)13-8-11-14-9-6-3-4-7-10(9)15-11/h3-4,6-7H,2,5,8H2,1H3,(H,13,16)(H,14,15)" W0A InChIKey InChI 1.03 MXDONONSXPZRMO-UHFFFAOYSA-N W0A SMILES_CANONICAL CACTVS 3.385 "CCCC(=O)NCc1[nH]c2ccccc2n1" W0A SMILES CACTVS 3.385 "CCCC(=O)NCc1[nH]c2ccccc2n1" W0A SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CCCC(=O)NCc1[nH]c2ccccc2n1" W0A SMILES "OpenEye OEToolkits" 2.0.7 "CCCC(=O)NCc1[nH]c2ccccc2n1" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier W0A "SYSTEMATIC NAME" ACDLabs 12.01 "N-[(1H-benzimidazol-2-yl)methyl]butanamide" W0A "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "~{N}-(1~{H}-benzimidazol-2-ylmethyl)butanamide" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site W0A "Create component" 2020-09-24 RCSB W0A "Initial release" 2021-01-13 RCSB ##