data_W0B # _chem_comp.id W0B _chem_comp.name "diphenylmethyl (1R,2S,5R)-2-({(2R)-1-hydroxy-3-[(3S)-2-oxopyrrolidin-3-yl]propan-2-yl}carbamoyl)-6,6-dimethyl-3-azabicyclo[3.1.0]hexane-3-carboxylate" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C29 H35 N3 O5" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-09-21 _chem_comp.pdbx_modified_date 2024-09-20 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 505.605 _chem_comp.one_letter_code ? _chem_comp.three_letter_code W0B _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8U9K _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal W0B C10 C1 C 0 1 Y N N N N N -9.721 -20.575 -19.541 3.347 0.965 1.253 C10 W0B 1 W0B C11 C2 C 0 1 Y N N N N N -10.352 -21.417 -20.452 3.159 2.158 1.925 C11 W0B 2 W0B C12 C3 C 0 1 N N N N N N -9.808 -17.184 -18.196 1.036 -0.482 -0.361 C12 W0B 3 W0B C13 C4 C 0 1 N N N N N N -8.213 -16.014 -19.699 0.969 -2.927 -1.055 C13 W0B 4 W0B C14 C5 C 0 1 N N S N N N -9.269 -14.824 -17.843 -1.066 -1.929 -0.436 C14 W0B 5 W0B C15 C6 C 0 1 N N N N N N -10.689 -14.352 -18.033 -1.718 -0.940 0.496 C15 W0B 6 W0B C16 C7 C 0 1 N N S N N N -7.778 -14.562 -19.770 0.225 -4.007 -0.240 C16 W0B 7 W0B C17 C8 C 0 1 N N S N N N -12.680 -13.262 -17.119 -3.638 0.378 1.211 C17 W0B 8 W0B C18 C9 C 0 1 N N N N N N -6.820 -14.182 -18.641 -1.075 -4.574 -0.813 C18 W0B 9 W0B C19 C10 C 0 1 N N N N N N -13.580 -14.009 -16.109 -4.769 1.101 0.477 C19 W0B 10 W0B C2 C11 C 0 1 N N N N N N -10.434 -19.532 -18.766 3.002 0.862 -0.211 C2 W0B 11 W0B C20 C12 C 0 1 N N S N N N -13.563 -15.496 -16.415 -4.185 1.935 -0.664 C20 W0B 12 W0B C21 C13 C 0 1 N N N N N N -14.237 -15.718 -17.764 -3.279 3.056 -0.106 C21 W0B 13 W0B C22 C14 C 0 1 N N N N N N -15.241 -16.847 -17.540 -3.574 4.216 -1.083 C22 W0B 14 W0B C23 C15 C 0 1 N N N N N N -5.985 -12.904 -18.782 -1.561 -5.917 -0.264 C23 W0B 15 W0B C24 C16 C 0 1 N N N N N N -14.384 -16.321 -15.476 -5.284 2.676 -1.395 C24 W0B 16 W0B C25 C17 C 0 1 N N N N N N -6.281 -15.220 -17.643 -1.359 -4.327 -2.296 C25 W0B 17 W0B C26 C18 C 0 1 Y N N N N N -9.613 -22.366 -21.166 3.475 2.253 3.267 C26 W0B 18 W0B C27 C19 C 0 1 Y N N N N N -8.236 -22.463 -20.974 3.978 1.154 3.938 C27 W0B 19 W0B C28 C20 C 0 1 Y N N N N N -7.600 -21.616 -20.071 4.165 -0.040 3.266 C28 W0B 20 W0B C29 C21 C 0 1 Y N N N N N -8.342 -20.675 -19.367 3.855 -0.132 1.922 C29 W0B 21 W0B C3 C22 C 0 1 Y N N N N N -11.845 -19.384 -19.220 4.260 0.983 -1.032 C3 W0B 22 W0B C34 C23 C 0 1 N N R N N N -8.317 -13.837 -18.539 -1.108 -3.348 0.170 C34 W0B 23 W0B C4 C24 C 0 1 Y N N N N N -12.818 -20.286 -18.787 4.634 2.211 -1.546 C4 W0B 24 W0B C5 C25 C 0 1 Y N N N N N -14.137 -20.163 -19.209 5.787 2.323 -2.299 C5 W0B 25 W0B C6 C26 C 0 1 Y N N N N N -14.498 -19.117 -20.061 6.567 1.206 -2.539 C6 W0B 26 W0B C7 C27 C 0 1 Y N N N N N -13.533 -18.206 -20.494 6.193 -0.021 -2.026 C7 W0B 27 W0B C8 C28 C 0 1 N N N N N N -12.623 -11.772 -16.782 -4.208 -0.362 2.423 C8 W0B 28 W0B C9 C29 C 0 1 Y N N N N N -12.212 -18.336 -20.061 5.042 -0.132 -1.268 C9 W0B 29 W0B N13 N1 N 0 1 N N N N N N -9.135 -16.089 -18.564 0.392 -1.644 -0.590 N13 W0B 30 W0B N16 N2 N 0 1 N N N N N N -11.303 -13.743 -17.023 -3.004 -0.583 0.306 N16 W0B 31 W0B N23 N3 N 0 1 N N N N N N -15.285 -17.057 -16.120 -4.917 3.951 -1.611 N23 W0B 32 W0B O1 O1 O 0 1 N N N N N N -9.634 -18.367 -19.020 2.376 -0.422 -0.471 O1 W0B 33 W0B O26 O2 O 0 1 N N N N N N -14.225 -16.334 -14.280 -6.341 2.190 -1.737 O26 W0B 34 W0B O33 O3 O 0 1 N N N N N N -10.537 -17.244 -17.223 0.406 0.511 -0.056 O33 W0B 35 W0B O38 O4 O 0 1 N N N N N N -11.247 -14.545 -19.104 -1.087 -0.466 1.416 O38 W0B 36 W0B O9 O5 O 0 1 N N N N N N -13.882 -11.160 -17.049 -5.259 -1.233 1.999 O9 W0B 37 W0B H11 H1 H 0 1 N N N N N N -11.418 -21.337 -20.608 2.766 3.017 1.400 H11 W0B 38 W0B H13 H2 H 0 1 N N N N N N -7.344 -16.668 -19.533 2.038 -2.961 -0.844 H13 W0B 39 W0B H131 H3 H 0 0 N N N N N N -8.722 -16.309 -20.628 0.788 -3.060 -2.121 H131 W0B 40 W0B H14 H4 H 0 1 N N N N N N -9.019 -14.927 -16.777 -1.557 -1.915 -1.408 H14 W0B 41 W0B H16 H5 H 0 1 N N N N N N -7.724 -14.043 -20.739 0.810 -4.604 0.459 H16 W0B 42 W0B H17 H6 H 0 1 N N N N N N -13.073 -13.400 -18.137 -2.899 1.106 1.545 H17 W0B 43 W0B H191 H7 H 0 0 N N N N N N -13.204 -13.841 -15.089 -5.466 0.367 0.071 H191 W0B 44 W0B H19 H8 H 0 1 N N N N N N -14.610 -13.631 -16.187 -5.295 1.754 1.173 H19 W0B 45 W0B H2 H9 H 0 1 N N N N N N -10.414 -19.785 -17.696 2.314 1.663 -0.479 H2 W0B 46 W0B H20 H10 H 0 1 N N N N N N -12.527 -15.865 -16.446 -3.627 1.301 -1.353 H20 W0B 47 W0B H211 H11 H 0 0 N N N N N N -14.754 -14.803 -18.090 -3.567 3.321 0.912 H211 W0B 48 W0B H21 H12 H 0 1 N N N N N N -13.494 -16.009 -18.521 -2.229 2.767 -0.149 H21 W0B 49 W0B H221 H13 H 0 0 N N N N N N -16.234 -16.557 -17.915 -3.558 5.169 -0.553 H221 W0B 50 W0B H22 H14 H 0 1 N N N N N N -14.909 -17.762 -18.052 -2.844 4.222 -1.892 H22 W0B 51 W0B H232 H15 H 0 0 N N N N N N -4.919 -13.168 -18.854 -0.951 -6.201 0.594 H232 W0B 52 W0B H231 H16 H 0 0 N N N N N N -6.291 -12.365 -19.691 -2.602 -5.828 0.045 H231 W0B 53 W0B H23 H17 H 0 1 N N N N N N -6.146 -12.262 -17.903 -1.476 -6.679 -1.039 H23 W0B 54 W0B H252 H18 H 0 0 N N N N N N -5.207 -15.376 -17.820 -0.627 -4.862 -2.900 H252 W0B 55 W0B H25 H19 H 0 1 N N N N N N -6.434 -14.856 -16.616 -2.361 -4.683 -2.538 H25 W0B 56 W0B H251 H20 H 0 0 N N N N N N -6.817 -16.171 -17.778 -1.293 -3.259 -2.505 H251 W0B 57 W0B H26 H21 H 0 1 N N N N N N -10.109 -23.023 -21.865 3.329 3.186 3.792 H26 W0B 58 W0B H27 H22 H 0 1 N N N N N N -7.663 -23.194 -21.525 4.225 1.228 4.987 H27 W0B 59 W0B H28 H23 H 0 1 N N N N N N -6.533 -21.690 -19.918 4.558 -0.898 3.790 H28 W0B 60 W0B H29 H24 H 0 1 N N N N N N -7.843 -20.012 -18.676 4.001 -1.065 1.398 H29 W0B 61 W0B H341 H25 H 0 0 N N N N N N -8.624 -12.785 -18.633 -1.546 -3.462 1.161 H341 W0B 62 W0B H4 H26 H 0 1 N N N N N N -12.544 -21.088 -18.117 4.025 3.083 -1.358 H4 W0B 63 W0B H5 H27 H 0 1 N N N N N N -14.880 -20.874 -18.879 6.079 3.282 -2.701 H5 W0B 64 W0B H6 H28 H 0 1 N N N N N N -15.523 -19.013 -20.385 7.467 1.293 -3.129 H6 W0B 65 W0B H7 H29 H 0 1 N N N N N N -13.807 -17.403 -21.162 6.802 -0.893 -2.213 H7 W0B 66 W0B H81 H30 H 0 1 N N N N N N -12.378 -11.649 -15.717 -3.419 -0.948 2.895 H81 W0B 67 W0B H8 H31 H 0 1 N N N N N N -11.847 -11.290 -17.395 -4.601 0.360 3.138 H8 W0B 68 W0B H9 H32 H 0 1 N N N N N N -11.470 -17.619 -20.380 4.750 -1.091 -0.867 H9 W0B 69 W0B HN16 H33 H 0 0 N N N N N N -10.805 -13.609 -16.166 -3.509 -0.962 -0.430 HN16 W0B 70 W0B HN23 H34 H 0 0 N N N N N N -15.920 -17.684 -15.668 -5.469 4.611 -2.059 HN23 W0B 71 W0B HO9 H35 H 0 1 N N N N N N -13.836 -10.235 -16.837 -5.668 -1.735 2.717 HO9 W0B 72 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal W0B O33 C12 DOUB N N 1 W0B C12 N13 SING N N 2 W0B O1 C12 SING N N 3 W0B N13 C14 SING N N 4 W0B C13 N13 SING N N 5 W0B C14 C34 SING N N 6 W0B C14 C15 SING N N 7 W0B C34 C18 SING N N 8 W0B C34 C16 SING N N 9 W0B C23 C18 SING N N 10 W0B C25 C18 SING N N 11 W0B C18 C16 SING N N 12 W0B C16 C13 SING N N 13 W0B O38 C15 DOUB N N 14 W0B C15 N16 SING N N 15 W0B N16 C17 SING N N 16 W0B C8 C17 SING N N 17 W0B C17 C19 SING N N 18 W0B O9 C8 SING N N 19 W0B C19 C20 SING N N 20 W0B C20 C21 SING N N 21 W0B C20 C24 SING N N 22 W0B C21 C22 SING N N 23 W0B C22 N23 SING N N 24 W0B N23 C24 SING N N 25 W0B C24 O26 DOUB N N 26 W0B C2 O1 SING N N 27 W0B C3 C2 SING N N 28 W0B C10 C2 SING N N 29 W0B C3 C4 DOUB Y N 30 W0B C9 C3 SING Y N 31 W0B C4 C5 SING Y N 32 W0B C5 C6 DOUB Y N 33 W0B C6 C7 SING Y N 34 W0B C7 C9 DOUB Y N 35 W0B C10 C11 DOUB Y N 36 W0B C29 C10 SING Y N 37 W0B C11 C26 SING Y N 38 W0B C26 C27 DOUB Y N 39 W0B C27 C28 SING Y N 40 W0B C28 C29 DOUB Y N 41 W0B C11 H11 SING N N 42 W0B C13 H13 SING N N 43 W0B C13 H131 SING N N 44 W0B C14 H14 SING N N 45 W0B C16 H16 SING N N 46 W0B C17 H17 SING N N 47 W0B C19 H191 SING N N 48 W0B C19 H19 SING N N 49 W0B C2 H2 SING N N 50 W0B C20 H20 SING N N 51 W0B C21 H211 SING N N 52 W0B C21 H21 SING N N 53 W0B C22 H221 SING N N 54 W0B C22 H22 SING N N 55 W0B C23 H232 SING N N 56 W0B C23 H231 SING N N 57 W0B C23 H23 SING N N 58 W0B C25 H252 SING N N 59 W0B C25 H25 SING N N 60 W0B C25 H251 SING N N 61 W0B C26 H26 SING N N 62 W0B C27 H27 SING N N 63 W0B C28 H28 SING N N 64 W0B C29 H29 SING N N 65 W0B C34 H341 SING N N 66 W0B C4 H4 SING N N 67 W0B C5 H5 SING N N 68 W0B C6 H6 SING N N 69 W0B C7 H7 SING N N 70 W0B C8 H81 SING N N 71 W0B C8 H8 SING N N 72 W0B C9 H9 SING N N 73 W0B N16 HN16 SING N N 74 W0B N23 HN23 SING N N 75 W0B O9 HO9 SING N N 76 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor W0B SMILES ACDLabs 12.01 "O=C1NCCC1CC(CO)NC(=O)C1C2C(CN1C(=O)OC(c1ccccc1)c1ccccc1)C2(C)C" W0B InChI InChI 1.06 "InChI=1S/C29H35N3O5/c1-29(2)22-16-32(24(23(22)29)27(35)31-21(17-33)15-20-13-14-30-26(20)34)28(36)37-25(18-9-5-3-6-10-18)19-11-7-4-8-12-19/h3-12,20-25,33H,13-17H2,1-2H3,(H,30,34)(H,31,35)/t20-,21+,22-,23-,24-/m0/s1" W0B InChIKey InChI 1.06 CAVDSRURIWFJKC-HTUFRPJOSA-N W0B SMILES_CANONICAL CACTVS 3.385 "CC1(C)[C@H]2CN([C@@H]([C@@H]12)C(=O)N[C@H](CO)C[C@@H]3CCNC3=O)C(=O)OC(c4ccccc4)c5ccccc5" W0B SMILES CACTVS 3.385 "CC1(C)[CH]2CN([CH]([CH]12)C(=O)N[CH](CO)C[CH]3CCNC3=O)C(=O)OC(c4ccccc4)c5ccccc5" W0B SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC1([C@@H]2[C@H]1[C@H](N(C2)C(=O)OC(c3ccccc3)c4ccccc4)C(=O)N[C@@H](C[C@@H]5CCNC5=O)CO)C" W0B SMILES "OpenEye OEToolkits" 2.0.7 "CC1(C2C1C(N(C2)C(=O)OC(c3ccccc3)c4ccccc4)C(=O)NC(CC5CCNC5=O)CO)C" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier W0B "SYSTEMATIC NAME" ACDLabs 12.01 "diphenylmethyl (1R,2S,5R)-2-({(2R)-1-hydroxy-3-[(3S)-2-oxopyrrolidin-3-yl]propan-2-yl}carbamoyl)-6,6-dimethyl-3-azabicyclo[3.1.0]hexane-3-carboxylate" W0B "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(diphenylmethyl) (1~{R},2~{S},5~{S})-6,6-dimethyl-2-[[(2~{S})-1-oxidanyl-3-[(3~{S})-2-oxidanylidenepyrrolidin-3-yl]propan-2-yl]carbamoyl]-3-azabicyclo[3.1.0]hexane-3-carboxylate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site W0B "Create component" 2023-09-21 RCSB W0B "Initial release" 2024-09-25 RCSB #