data_W0F # _chem_comp.id W0F _chem_comp.name "[[(2~{S},3~{R},4~{S},5~{R})-5-(2-azanyl-6-oxidanylidene-3~{H}-purin-9-yl)-3-methoxy-4-oxidanyl-oxolan-2-yl]methoxy-oxidanyl-phosphoryl] phosphono hydrogen phosphate" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C11 H18 N5 O14 P3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-09-08 _chem_comp.pdbx_modified_date 2023-12-01 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 537.207 _chem_comp.one_letter_code ? _chem_comp.three_letter_code W0F _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8WAK _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal W0F C10 C1 C 0 1 Y N N N N N 193.198 211.905 292.857 3.664 0.904 1.896 C10 W0F 1 W0F C13 C2 C 0 1 Y N N N N N 193.908 213.263 291.313 4.496 1.235 -0.111 C13 W0F 2 W0F C15 C3 C 0 1 N N N N N N 195.063 214.024 289.398 5.763 2.225 -1.852 C15 W0F 3 W0F C17 C4 C 0 1 N N N N N N 195.357 211.747 289.914 5.915 3.199 0.245 C17 W0F 4 W0F C20 C5 C 0 1 N N N N N N 189.357 211.469 293.234 0.329 -2.425 -0.371 C20 W0F 5 W0F P22 P1 P 0 1 N N N N N N 189.023 208.862 294.085 -2.214 -1.725 -0.801 P22 W0F 6 W0F P26 P2 P 0 1 N N N N N N 187.254 208.470 296.368 -4.711 -0.169 -0.442 P26 W0F 7 W0F P30 P3 P 0 1 N N N N N N 187.152 207.775 299.594 -6.150 2.174 0.666 P30 W0F 8 W0F C01 C6 C 0 1 N N N N N N 187.477 213.549 293.768 3.698 -5.230 0.677 C01 W0F 9 W0F O02 O1 O 0 1 N N N N N N 188.492 213.923 292.871 3.002 -4.114 1.235 O02 W0F 10 W0F C03 C7 C 0 1 N N R N N N 189.823 213.744 293.291 2.659 -3.106 0.281 C03 W0F 11 W0F C04 C8 C 0 1 N N S N N N 190.304 212.670 292.808 1.393 -2.350 0.726 C04 W0F 12 W0F O05 O2 O 0 1 N N N N N N 191.755 212.958 293.415 1.769 -0.981 0.949 O05 W0F 13 W0F C06 C9 C 0 1 N N R N N N 192.146 214.126 293.080 2.915 -0.717 0.112 C06 W0F 14 W0F C07 C10 C 0 1 N N S N N N 190.750 214.722 292.729 3.757 -2.016 0.227 C07 W0F 15 W0F O08 O3 O 0 1 N N N N N N 190.400 214.931 291.394 4.533 -2.016 1.426 O08 W0F 16 W0F N09 N1 N 0 1 Y N N N N N 193.148 213.173 292.408 3.667 0.436 0.615 N09 W0F 17 W0F N11 N2 N 0 1 Y N N N N N 193.990 211.137 292.066 4.441 1.945 1.981 N11 W0F 18 W0F C12 C11 C 0 1 Y N N N N N 194.466 211.922 291.085 4.985 2.194 0.767 C12 W0F 19 W0F N14 N3 N 0 1 N N N N N N 194.238 214.256 290.452 4.898 1.270 -1.422 N14 W0F 20 W0F N16 N4 N 0 1 N N N N N N 195.599 212.816 289.143 6.252 3.149 -1.053 N16 W0F 21 W0F O18 O4 O 0 1 N N N N N N 195.869 210.638 289.654 6.374 4.063 0.975 O18 W0F 22 W0F N19 N5 N 0 1 N N N N N N 195.357 215.052 288.567 6.141 2.226 -3.168 N19 W0F 23 W0F O21 O5 O 0 1 N N N N N N 189.807 210.083 293.250 -0.880 -1.823 0.096 O21 W0F 24 W0F O23 O6 O 0 1 N N N N N N 189.880 207.583 294.380 -2.774 -3.205 -1.093 O23 W0F 25 W0F O24 O7 O 0 1 N N N N N N 187.903 208.564 293.117 -1.899 -1.054 -2.082 O24 W0F 26 W0F O25 O8 O 0 1 N N N N N N 188.265 209.420 295.478 -3.330 -0.875 -0.011 O25 W0F 27 W0F O27 O9 O 0 1 N N N N N N 187.921 207.214 295.930 -5.877 -1.277 -0.525 O27 W0F 28 W0F O28 O10 O 0 1 N N N N N N 185.940 208.503 295.667 -4.545 0.472 -1.766 O28 W0F 29 W0F O29 O11 O 0 1 N N N N N N 187.250 208.674 298.095 -5.108 0.947 0.649 O29 W0F 30 W0F O31 O12 O 0 1 N N N N N N 188.183 206.721 299.668 -6.137 2.850 -0.651 O31 W0F 31 W0F O32 O13 O 0 1 N N N N N N 185.778 207.135 299.969 -7.630 1.617 0.968 O32 W0F 32 W0F O33 O14 O 0 1 N N N N N N 187.580 208.557 300.786 -5.726 3.222 1.812 O33 W0F 33 W0F H1 H1 H 0 1 N N N N N N 192.676 211.546 293.732 3.099 0.479 2.713 H1 W0F 34 W0F H2 H2 H 0 1 N N N N N N 189.022 211.693 294.258 0.681 -1.894 -1.255 H2 W0F 35 W0F H3 H3 H 0 1 N N N N N N 188.496 211.502 292.551 0.141 -3.468 -0.624 H3 W0F 36 W0F H4 H4 H 0 1 N N N N N N 186.495 213.742 293.312 3.922 -5.949 1.464 H4 W0F 37 W0F H5 H5 H 0 1 N N N N N N 187.569 212.478 294.000 3.076 -5.704 -0.083 H5 W0F 38 W0F H6 H6 H 0 1 N N N N N N 187.573 214.134 294.695 4.628 -4.887 0.222 H6 W0F 39 W0F H7 H7 H 0 1 N N N N N N 189.882 213.774 294.389 2.512 -3.549 -0.704 H7 W0F 40 W0F H8 H8 H 0 1 N N N N N N 190.379 212.682 291.711 1.006 -2.785 1.648 H8 W0F 41 W0F H9 H9 H 0 1 N N N N N N 192.631 214.711 293.875 2.606 -0.551 -0.920 H9 W0F 42 W0F H10 H10 H 0 1 N N N N N N 190.646 215.664 293.287 4.394 -2.145 -0.648 H10 W0F 43 W0F H11 H11 H 0 1 N N N N N N 189.524 215.296 291.349 5.173 -1.293 1.481 H11 W0F 44 W0F H12 H12 H 0 1 N N N N N N 193.868 215.174 290.595 4.562 0.608 -2.046 H12 W0F 45 W0F H13 H13 H 0 1 N N N N N N 195.961 214.905 287.784 5.792 1.553 -3.774 H13 W0F 46 W0F H14 H14 H 0 1 N N N N N N 194.970 215.958 288.737 6.758 2.899 -3.496 H14 W0F 47 W0F H15 H15 H 0 1 N N N N N N 189.532 206.848 293.889 -3.002 -3.704 -0.297 H15 W0F 48 W0F H16 H16 H 0 1 N N N N N N 187.356 206.750 295.323 -6.041 -1.738 0.309 H16 W0F 49 W0F H17 H17 H 0 1 N N N N N N 185.900 206.213 300.162 -7.712 1.160 1.817 H17 W0F 50 W0F H18 H18 H 0 1 N N N N N N 188.337 208.142 301.182 -6.312 3.989 1.879 H18 W0F 51 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal W0F N19 C15 SING N N 1 W0F N16 C15 DOUB N N 2 W0F N16 C17 SING N N 3 W0F C15 N14 SING N N 4 W0F O18 C17 DOUB N N 5 W0F C17 C12 SING N N 6 W0F N14 C13 SING N N 7 W0F C12 C13 DOUB Y N 8 W0F C12 N11 SING Y N 9 W0F C13 N09 SING Y N 10 W0F O08 C07 SING N N 11 W0F N11 C10 DOUB Y N 12 W0F N09 C10 SING Y N 13 W0F N09 C06 SING N N 14 W0F C07 C06 SING N N 15 W0F C07 C03 SING N N 16 W0F C04 C20 SING N N 17 W0F C04 C03 SING N N 18 W0F C04 O05 SING N N 19 W0F O02 C03 SING N N 20 W0F O02 C01 SING N N 21 W0F C06 O05 SING N N 22 W0F O24 P22 DOUB N N 23 W0F C20 O21 SING N N 24 W0F O21 P22 SING N N 25 W0F P22 O23 SING N N 26 W0F P22 O25 SING N N 27 W0F O25 P26 SING N N 28 W0F O28 P26 DOUB N N 29 W0F O27 P26 SING N N 30 W0F P26 O29 SING N N 31 W0F O29 P30 SING N N 32 W0F P30 O31 DOUB N N 33 W0F P30 O32 SING N N 34 W0F P30 O33 SING N N 35 W0F C10 H1 SING N N 36 W0F C20 H2 SING N N 37 W0F C20 H3 SING N N 38 W0F C01 H4 SING N N 39 W0F C01 H5 SING N N 40 W0F C01 H6 SING N N 41 W0F C03 H7 SING N N 42 W0F C04 H8 SING N N 43 W0F C06 H9 SING N N 44 W0F C07 H10 SING N N 45 W0F O08 H11 SING N N 46 W0F N14 H12 SING N N 47 W0F N19 H13 SING N N 48 W0F N19 H14 SING N N 49 W0F O23 H15 SING N N 50 W0F O27 H16 SING N N 51 W0F O32 H17 SING N N 52 W0F O33 H18 SING N N 53 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor W0F InChI InChI 1.06 "InChI=1S/C11H18N5O14P3/c1-26-7-4(2-27-32(22,23)30-33(24,25)29-31(19,20)21)28-10(6(7)17)16-3-13-5-8(16)14-11(12)15-9(5)18/h3-4,6-7,10,17H,2H2,1H3,(H,22,23)(H,24,25)(H2,19,20,21)(H3,12,14,15,18)/t4-,6-,7-,10+/m0/s1" W0F InChIKey InChI 1.06 OHOBECDATGAGJW-SXVXDFOESA-N W0F SMILES_CANONICAL CACTVS 3.385 "CO[C@@H]1[C@H](O)[C@@H](O[C@H]1CO[P](O)(=O)O[P](O)(=O)O[P](O)(O)=O)n2cnc3C(=O)N=C(N)Nc23" W0F SMILES CACTVS 3.385 "CO[CH]1[CH](O)[CH](O[CH]1CO[P](O)(=O)O[P](O)(=O)O[P](O)(O)=O)n2cnc3C(=O)N=C(N)Nc23" W0F SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CO[C@H]1[C@@H](O[C@H]([C@H]1O)n2cnc3c2NC(=NC3=O)N)COP(=O)(O)OP(=O)(O)OP(=O)(O)O" W0F SMILES "OpenEye OEToolkits" 2.0.7 "COC1C(OC(C1O)n2cnc3c2NC(=NC3=O)N)COP(=O)(O)OP(=O)(O)OP(=O)(O)O" # _pdbx_chem_comp_identifier.comp_id W0F _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "[[(2~{S},3~{R},4~{S},5~{R})-5-(2-azanyl-6-oxidanylidene-3~{H}-purin-9-yl)-3-methoxy-4-oxidanyl-oxolan-2-yl]methoxy-oxidanyl-phosphoryl] phosphono hydrogen phosphate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site W0F "Create component" 2023-09-08 PDBJ W0F "Initial release" 2023-12-06 RCSB #