data_W28 # _chem_comp.id W28 _chem_comp.name "N-[(2S)-1-({(2S)-1-hydroxy-3-[(3S)-2-oxopyrrolidin-3-yl]propan-2-yl}amino)-4-methyl-1-oxopentan-2-yl]-1H-indole-2-carboxamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C22 H30 N4 O4" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-09-21 _chem_comp.pdbx_modified_date 2024-02-02 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 414.498 _chem_comp.one_letter_code ? _chem_comp.three_letter_code W28 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8UAB _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal W28 C01 C1 C 0 1 N N N N N N -18.560 0.633 17.892 -1.507 2.754 2.173 C01 W28 1 W28 C02 C2 C 0 1 N N N N N N -19.960 0.862 17.363 -1.255 3.131 0.712 C02 W28 2 W28 C03 C3 C 0 1 N N N N N N -20.969 0.029 18.128 -1.244 4.655 0.574 C03 W28 3 W28 C04 C4 C 0 1 N N N N N N -20.006 0.578 15.869 0.095 2.569 0.265 C04 W28 4 W28 C05 C5 C 0 1 N N S N N N -19.258 1.600 15.020 0.033 1.040 0.256 C05 W28 5 W28 N06 N1 N 0 1 N N N N N N -19.869 2.895 15.169 1.353 0.500 -0.079 N06 W28 6 W28 C07 C6 C 0 1 N N N N N N -19.258 4.020 14.753 2.294 0.379 0.878 C07 W28 7 W28 O08 O1 O 0 1 N N N N N N -18.204 4.014 14.120 2.020 0.629 2.036 O08 W28 8 W28 C09 C7 C 0 1 Y N N N N N -19.915 5.278 15.114 3.654 -0.055 0.521 C09 W28 9 W28 C10 C8 C 0 1 Y N N N N N -21.056 5.556 15.814 4.684 -0.213 1.393 C10 W28 10 W28 C11 C9 C 0 1 Y N N N N N -21.192 6.966 15.853 5.812 -0.642 0.653 C11 W28 11 W28 C12 C10 C 0 1 Y N N N N N -22.128 7.849 16.407 7.130 -0.959 1.006 C12 W28 12 W28 C13 C11 C 0 1 Y N N N N N -21.941 9.199 16.249 8.015 -1.352 0.044 C13 W28 13 W28 C14 C12 C 0 1 Y N N N N N -20.844 9.701 15.553 7.621 -1.441 -1.285 C14 W28 14 W28 C15 C13 C 0 1 Y N N N N N -19.906 8.868 14.992 6.331 -1.135 -1.657 C15 W28 15 W28 C16 C14 C 0 1 Y N N N N N -20.089 7.499 15.150 5.411 -0.731 -0.694 C16 W28 16 W28 N17 N2 N 0 1 Y N N N N N -19.329 6.453 14.711 4.084 -0.373 -0.752 N17 W28 17 W28 C18 C15 C 0 1 N N N N N N -19.223 1.179 13.552 -0.972 0.584 -0.770 C18 W28 18 W28 O19 O2 O 0 1 N N N N N N -20.219 1.306 12.840 -0.597 0.208 -1.861 O19 W28 19 W28 N20 N3 N 0 1 N N N N N N -18.069 0.674 13.102 -2.287 0.593 -0.476 N20 W28 20 W28 C21 C16 C 0 1 N N S N N N -17.915 0.178 11.734 -3.254 0.039 -1.427 C21 W28 21 W28 C22 C17 C 0 1 N N N N N N -16.835 0.973 11.004 -4.536 -0.345 -0.685 C22 W28 22 W28 C23 C18 C 0 1 N N S N N N -17.282 2.399 10.691 -4.235 -1.480 0.297 C23 W28 23 W28 C24 C19 C 0 1 N N N N N N -18.518 2.545 9.801 -3.800 -2.753 -0.463 C24 W28 24 W28 C25 C20 C 0 1 N N N N N N -18.250 3.815 9.012 -4.444 -3.867 0.393 C25 W28 25 W28 N26 N4 N 0 1 N N N N N N -16.798 3.928 9.032 -5.587 -3.235 1.061 N26 W28 26 W28 C27 C21 C 0 1 N N N N N N -16.206 3.168 9.943 -5.493 -1.892 1.030 C27 W28 27 W28 O28 O3 O 0 1 N N N N N N -14.995 3.098 10.167 -6.299 -1.128 1.516 O28 W28 28 W28 C29 C22 C 0 1 N N N N N N -17.565 -1.292 11.776 -3.578 1.087 -2.494 C29 W28 29 W28 O30 O4 O 0 1 N N N N N N -17.536 -1.843 10.468 -4.240 2.198 -1.885 O30 W28 30 W28 H1 H1 H 0 1 N N N N N N -18.537 0.841 18.972 -1.616 1.672 2.255 H1 W28 31 W28 H2 H2 H 0 1 N N N N N N -18.267 -0.412 17.713 -0.665 3.081 2.783 H2 W28 32 W28 H3 H3 H 0 1 N N N N N N -17.858 1.304 17.375 -2.419 3.238 2.522 H3 W28 33 W28 H4 H4 H 0 1 N N N N N N -20.211 1.922 17.514 -2.047 2.716 0.088 H4 W28 34 W28 H5 H5 H 0 1 N N N N N N -20.902 0.265 19.200 -0.453 5.071 1.198 H5 W28 35 W28 H6 H6 H 0 1 N N N N N N -21.982 0.256 17.765 -1.065 4.924 -0.467 H6 W28 36 W28 H7 H7 H 0 1 N N N N N N -20.755 -1.039 17.974 -2.206 5.056 0.892 H7 W28 37 W28 H8 H8 H 0 1 N N N N N N -21.059 0.569 15.551 0.325 2.929 -0.738 H8 W28 38 W28 H9 H9 H 0 1 N N N N N N -19.560 -0.412 15.691 0.872 2.897 0.956 H9 W28 39 W28 H10 H10 H 0 1 N N N N N N -18.221 1.648 15.383 -0.266 0.683 1.242 H10 W28 40 W28 H11 H11 H 0 1 N N N N N N -20.772 2.961 15.593 1.549 0.228 -0.989 H11 W28 41 W28 H12 H12 H 0 1 N N N N N N -21.728 4.835 16.255 4.648 -0.043 2.459 H12 W28 42 W28 H13 H13 H 0 1 N N N N N N -22.983 7.473 16.950 7.446 -0.892 2.037 H13 W28 43 W28 H14 H14 H 0 1 N N N N N N -22.659 9.886 16.673 9.031 -1.596 0.319 H14 W28 44 W28 H15 H15 H 0 1 N N N N N N -20.728 10.770 15.452 8.334 -1.755 -2.034 H15 W28 45 W28 H16 H16 H 0 1 N N N N N N -19.059 9.262 14.449 6.035 -1.207 -2.693 H16 W28 46 W28 H17 H17 H 0 1 N N N N N N -18.484 6.530 14.182 3.541 -0.346 -1.555 H17 W28 47 W28 H18 H18 H 0 1 N N N N N N -17.285 0.634 13.721 -2.593 0.967 0.365 H18 W28 48 W28 H19 H19 H 0 1 N N N N N N -18.865 0.300 11.193 -2.830 -0.845 -1.903 H19 W28 49 W28 H20 H20 H 0 1 N N N N N N -16.595 0.461 10.060 -4.912 0.519 -0.138 H20 W28 50 W28 H21 H21 H 0 1 N N N N N N -15.936 1.014 11.637 -5.286 -0.676 -1.403 H21 W28 51 W28 H22 H22 H 0 1 N N N N N N -17.480 2.915 11.642 -3.464 -1.176 1.005 H22 W28 52 W28 H23 H23 H 0 1 N N N N N N -19.429 2.647 10.409 -4.203 -2.759 -1.477 H23 W28 53 W28 H24 H24 H 0 1 N N N N N N -18.621 1.681 9.129 -2.715 -2.849 -0.477 H24 W28 54 W28 H25 H25 H 0 1 N N N N N N -18.719 4.685 9.496 -4.783 -4.683 -0.245 H25 W28 55 W28 H26 H26 H 0 1 N N N N N N -18.623 3.724 7.981 -3.732 -4.236 1.131 H26 W28 56 W28 H27 H27 H 0 1 N N N N N N -16.291 4.527 8.412 -6.317 -3.723 1.474 H27 W28 57 W28 H28 H28 H 0 1 N N N N N N -18.319 -1.825 12.375 -2.654 1.426 -2.962 H28 W28 58 W28 H29 H29 H 0 1 N N N N N N -16.575 -1.413 12.240 -4.228 0.647 -3.250 H29 W28 59 W28 H30 H30 H 0 1 N N N N N N -17.315 -2.766 10.517 -4.475 2.902 -2.504 H30 W28 60 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal W28 C25 N26 SING N N 1 W28 C25 C24 SING N N 2 W28 N26 C27 SING N N 3 W28 C24 C23 SING N N 4 W28 C27 O28 DOUB N N 5 W28 C27 C23 SING N N 6 W28 O30 C29 SING N N 7 W28 C23 C22 SING N N 8 W28 C22 C21 SING N N 9 W28 C21 C29 SING N N 10 W28 C21 N20 SING N N 11 W28 O19 C18 DOUB N N 12 W28 N20 C18 SING N N 13 W28 C18 C05 SING N N 14 W28 O08 C07 DOUB N N 15 W28 N17 C09 SING Y N 16 W28 N17 C16 SING Y N 17 W28 C07 C09 SING N N 18 W28 C07 N06 SING N N 19 W28 C15 C16 DOUB Y N 20 W28 C15 C14 SING Y N 21 W28 C05 N06 SING N N 22 W28 C05 C04 SING N N 23 W28 C09 C10 DOUB Y N 24 W28 C16 C11 SING Y N 25 W28 C14 C13 DOUB Y N 26 W28 C10 C11 SING Y N 27 W28 C11 C12 DOUB Y N 28 W28 C04 C02 SING N N 29 W28 C13 C12 SING Y N 30 W28 C02 C01 SING N N 31 W28 C02 C03 SING N N 32 W28 C01 H1 SING N N 33 W28 C01 H2 SING N N 34 W28 C01 H3 SING N N 35 W28 C02 H4 SING N N 36 W28 C03 H5 SING N N 37 W28 C03 H6 SING N N 38 W28 C03 H7 SING N N 39 W28 C04 H8 SING N N 40 W28 C04 H9 SING N N 41 W28 C05 H10 SING N N 42 W28 N06 H11 SING N N 43 W28 C10 H12 SING N N 44 W28 C12 H13 SING N N 45 W28 C13 H14 SING N N 46 W28 C14 H15 SING N N 47 W28 C15 H16 SING N N 48 W28 N17 H17 SING N N 49 W28 N20 H18 SING N N 50 W28 C21 H19 SING N N 51 W28 C22 H20 SING N N 52 W28 C22 H21 SING N N 53 W28 C23 H22 SING N N 54 W28 C24 H23 SING N N 55 W28 C24 H24 SING N N 56 W28 C25 H25 SING N N 57 W28 C25 H26 SING N N 58 W28 N26 H27 SING N N 59 W28 C29 H28 SING N N 60 W28 C29 H29 SING N N 61 W28 O30 H30 SING N N 62 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor W28 SMILES ACDLabs 12.01 "CC(C)CC(NC(=O)c1cc2ccccc2[NH]1)C(=O)NC(CC1CCNC1=O)CO" W28 InChI InChI 1.06 "InChI=1S/C22H30N4O4/c1-13(2)9-18(21(29)24-16(12-27)10-15-7-8-23-20(15)28)26-22(30)19-11-14-5-3-4-6-17(14)25-19/h3-6,11,13,15-16,18,25,27H,7-10,12H2,1-2H3,(H,23,28)(H,24,29)(H,26,30)/t15-,16-,18-/m0/s1" W28 InChIKey InChI 1.06 GSGDUCVRBYFHMQ-BQFCYCMXSA-N W28 SMILES_CANONICAL CACTVS 3.385 "CC(C)C[C@H](NC(=O)c1[nH]c2ccccc2c1)C(=O)N[C@H](CO)C[C@@H]3CCNC3=O" W28 SMILES CACTVS 3.385 "CC(C)C[CH](NC(=O)c1[nH]c2ccccc2c1)C(=O)N[CH](CO)C[CH]3CCNC3=O" W28 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC(C)C[C@@H](C(=O)N[C@@H](C[C@@H]1CCNC1=O)CO)NC(=O)c2cc3ccccc3[nH]2" W28 SMILES "OpenEye OEToolkits" 2.0.7 "CC(C)CC(C(=O)NC(CC1CCNC1=O)CO)NC(=O)c2cc3ccccc3[nH]2" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier W28 "SYSTEMATIC NAME" ACDLabs 12.01 "N-[(2S)-1-({(2S)-1-hydroxy-3-[(3S)-2-oxopyrrolidin-3-yl]propan-2-yl}amino)-4-methyl-1-oxopentan-2-yl]-1H-indole-2-carboxamide" W28 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "~{N}-[(2~{S})-4-methyl-1-oxidanylidene-1-[[(2~{S})-1-oxidanyl-3-[(3~{S})-2-oxidanylidenepyrrolidin-3-yl]propan-2-yl]amino]pentan-2-yl]-1~{H}-indole-2-carboxamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site W28 "Create component" 2023-09-21 RCSB W28 "Other modification" 2024-01-22 RCSB W28 "Initial release" 2024-02-07 RCSB #